IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
113	 46.75	0	123559..124035	+	158	15600884	-	VCA0113	-	hypothetical protein
114	 52.13	+1	124042..125376	+	444	15600885	-	VCA0114	-	hypothetical protein
115	 48.58	0	125379..126152	+	257	15600886	-	VCA0115	-	hypothetical protein
116	 50.96	+1	126178..128787	+	869	15600887	-	VCA0116	-	clpB protein
117	 51.10	+1	128790..130382	+	530	15600888	-	VCA0117	-	sigma-54 dependent transcriptional regulator
118	 54.39	+1	130352..131035	+	227	15600889	-	VCA0118	-	hypothetical protein
119	 51.42	+1	131045..132454	+	469	15600890	-	VCA0119	-	hypothetical protein
120	 48.34	0	132470..136015	+	1181	15600891	-	VCA0120	-	IcmF-related protein
121	 49.29	0	136063..137328	+	421	15600892	-	VCA0121	-	hypothetical protein
122	 41.98	0	137379..137621	+	80	15600893	-	VCA0122	-	hypothetical protein
123	 47.09	0	137581..140634	+	1017	15600894	-	VCA0123	-	vgrG protein
124	 34.15	-2	140631..140999	+	122	15600895	-	VCA0124	-	hypothetical protein
125	 45.59	0	141147..141407	-	86	15600896	-	VCA0125	-	hypothetical protein
126	 40.48	-1	141382..141591	+	69	15600897	-	VCA0126	-	hypothetical protein
127	 47.13	0	141640..142110	+	156	15600898	-	VCA0127	-	D-ribose pyranase
128	 49.90	0	142137..143639	+	500	15600899	-	VCA0128	-	D-ribose transporter ATP binding protein
129	 50.35	0	143636..144634	+	332	15600900	rbsC	VCA0129	-	ribose ABC transporter permease protein
130	 51.07	+1	144693..145577	+	294	15600901	-	VCA0130	-	D-ribose transporter subunit RbsB
131	 50.49	0	145716..146636	+	306	15600902	-	VCA0131	-	ribokinase
132	 49.75	0	146647..147651	+	334	15600903	-	VCA0132	-	ribose operon repressor
133	 51.50	+1	148508..149239	+	243	15600904	-	VCA0134	-	uridine phosphorylase
134	 50.07	0	149379..150059	+	226	15600905	-	VCA0135	-	cyclic nucleotide binding protein, putative
135	 47.66	0	150112..151179	-	355	161582045	glpQ	VCA0136	-	glycerophosphodiester phosphodiesterase
136	 50.48	0	151333..152691	-	452	161582044	glpT	VCA0137	-	sn-glycerol-3-phosphate transporter
137	 27.78	-2	152838..152945	-	35	15600908	-	VCA0138	-	hypothetical protein
138	 44.25	0	153117..153464	-	115	15600909	-	VCA0139	-	hypothetical protein
139	 50.70	0	153872..155080	+	402	15600910	-	VCA0140	-	spindolin-related protein
140	 50.95	+1	155195..157249	-	684	15600911	-	VCA0141	-	C4-dicarboxylate transport sensor protein, putative
141	 54.25	+1	157539..158891	+	450	15600912	-	VCA0142	-	C4-dicarboxylate transport transcriptional regulatory protein
142	 41.44	0	158957..159067	+	36	15600913	-	VCA0143	-	hypothetical protein
143	 51.61	+1	159145..160200	+	351	15600914	-	VCA0144	-	immunogenic protein
144	 46.51	0	160169..160297	-	42	15600915	-	VCA0145	-	hypothetical protein
145	 52.72	+1	160350..162515	+	721	15600916	-	VCA0146	-	hypothetical protein
146	 50.00	0	162512..163723	+	403	15600917	-	VCA0147	-	hypothetical protein
147	 50.22	0	163832..167839	+	1335	15600918	-	VCA0148	-	TagA-related protein
148	 37.04	-1	167864..167971	+	35	15600919	-	VCA0149	-	hypothetical protein
149	 48.72	0	167987..168493	+	168	15600920	def	VCA0150	-	peptide deformylase
150	 46.93	0	168622..169974	+	450	15600921	-	VCA0151	-	oxidoreductase, putative
151	 51.54	+1	170049..170372	-	107	15600922	-	VCA0152	-	putative monovalent cation/H+ antiporter subunit G
152	 44.87	0	170372..170683	-	103	15600923	-	VCA0153	-	putative monovalent cation/H+ antiporter subunit F
153	 47.38	0	170643..171119	-	158	15600924	-	VCA0154	-	hypothetical protein
154	 48.96	0	171116..172612	-	498	15600925	-	VCA0155	-	NADH dehydrogenase, putative
155	 50.56	0	172609..172962	-	117	15600926	-	VCA0156	-	putative monovalent cation/H+ antiporter subunit C
156	 49.40	0	172962..175637	-	891	15600927	-	VCA0157	-	NADH dehydrogenase, putative
157	 48.76	0	175784..175984	-	66	15600928	-	VCA0158	-	hypothetical protein
158	 46.50	0	176056..176997	-	313	15600929	-	VCA0159	-	hypothetical protein
159	 47.90	0	177193..178428	-	411	15600930	-	VCA0160	-	tryptophan-specific transport protein
160	 47.92	0	178507..179925	-	472	15600931	tnaA	VCA0161	-	tryptophanase
161	 36.71	-1	180491..180697	-	68	15600932	-	VCA0162	-	hypothetical protein
162	 37.56	-1	180706..180918	+	70	15600933	-	VCA0163	-	hypothetical protein
163	 45.64	0	180988..181572	-	194	15600934	-	VCA0164	-	hypothetical protein
164	 46.41	0	181879..184011	+	710	15600935	-	VCA0165	-	GGDEF family protein
165	 45.07	0	184257..184469	+	70	15600936	-	VCA0166	-	cold shock transcriptional regulator CspA
166	 46.51	0	184758..185546	-	262	15600937	-	VCA0167	-	hypothetical protein
167	 52.12	+1	185635..186177	-	180	15600938	-	VCA0168	-	hypothetical protein
168	 49.84	0	186129..186740	-	203	15600939	-	VCA0169	-	hypothetical protein
169	 49.69	0	186643..187290	-	215	15600940	-	VCA0170	-	hypothetical protein
170	 52.70	+1	187284..189224	-	646	15600941	-	VCA0171	-	hypothetical protein
171	 50.05	0	189226..190182	-	318	15600942	-	VCA0172	-	hypothetical protein
172	 50.10	0	190169..190657	-	162	15600943	-	VCA0173	-	hypothetical protein
173	 50.11	0	190654..191589	-	311	15600944	-	VCA0174	-	hypothetical protein
174	 50.78	+1	191593..192549	-	318	15600945	-	VCA0175	-	MoxR-related protein
175	 48.63	0	192834..194768	+	644	15600946	-	VCA0176	-	methyl-accepting chemotaxis protein
176	 45.10	0	194825..195028	+	67	15600947	-	VCA0177	-	hypothetical protein
177	 51.53	+1	195304..195957	-	217	15600948	-	VCA0178	-	frnE protein
178	 49.71	0	196603..197811	+	402	15600949	-	VCA0179	-	NupC family protein
179	 48.01	0	198062..199294	+	410	15600950	-	VCA0180	-	peptidase T
180	 48.63	0	199466..200341	+	291	15600951	-	VCA0181	-	hypothetical protein
181	 52.10	+1	200338..201930	-	530	15600952	-	VCA0182	-	anaerobic nitric oxide reductase transcription regulator
182	 48.10	0	202121..203305	+	394	15600953	-	VCA0183	-	nitric oxide dioxygenase
183	 45.24	0	203449..203658	-	69	15600954	-	VCA0184	-	cold shock DNA-binding domain-containing protein
184	 43.86	0	204017..204244	+	75	15600955	-	VCA0185	-	hypothetical protein
185	 46.03	0	204632..205009	+	125	15600956	-	VCA0186	-	hypothetical protein
186	 44.70	0	205035..205166	-	43	15600957	-	VCA0187	-	hypothetical protein
187	 43.01	0	205244..205522	+	92	15600958	-	VCA0188	-	hypothetical protein
188	 46.87	0	205609..206613	+	334	15600959	-	VCA0189	-	response regulator
189	 43.62	0	206613..207059	+	148	15600960	-	VCA0190	-	hypothetical protein
190	 51.52	+1	207097..208581	+	494	15600961	-	VCA0191	-	hypothetical protein
191	 48.59	0	208570..209565	-	331	15600962	-	VCA0192	-	D-lactate dehydrogenase
192	 50.97	+1	209748..211091	+	447	15600963	-	VCA0193	-	Na+/H+ antiporter, putative
193	 47.45	0	211093..211935	-	280	15600964	-	VCA0194	-	potassium channel protein, putative
194	 44.44	0	212001..212549	-	182	15600965	-	VCA0195	-	hypothetical protein
195	 37.83	-1	212665..213042	-	125	15600966	-	VCA0196	-	hypothetical protein
196	 51.05	+1	213207..214250	+	347	15600967	-	VCA0197	-	guanosine 5'-monophosphate oxidoreductase
197	 39.06	-1	214574..215725	+	383	15600968	-	VCA0198	-	site-specific DNA-methyltransferase, putative
198	 34.74	-2	215849..217765	+	638	15600969	-	VCA0199	-	hypothetical protein
199	 38.13	-1	217758..218882	+	374	15600970	-	VCA0200	-	hypothetical protein
200	 31.74	-2	218879..219757	+	292	15600971	-	VCA0201	-	hypothetical protein
201	 38.81	-1	219825..220262	-	145	15600972	-	VCA0202	-	IS1004 transposase
202	 48.89	0	220767..222122	-	451	15600973	-	VCA0204	-	ATP-dependent RNA helicase RhlE
203	 50.94	+1	222312..223640	-	442	15600974	-	VCA0205	-	anaerobic C4-dicarboxylate transporter
204	 41.67	0	223751..223882	-	43	15600975	-	VCA0206	-	hypothetical protein
205	 50.90	+1	223891..224721	-	276	15600976	nadE	VCA0207	-	NAD synthetase
206	 48.67	0	224824..225351	+	175	15600977	-	VCA0208	-	nicotinic acid mononucleotide adenylyltransferase
207	 50.82	+1	225302..225484	+	60	15600978	-	VCA0209	-	hypothetical protein
208	 46.34	0	225591..227159	+	522	15600979	-	VCA0210	-	response regulator, putative
209	 46.53	0	227217..229163	-	648	15600980	-	VCA0211	-	sensory box sensor histidine kinase
210	 46.29	0	229338..230387	+	349	15600981	-	VCA0212	-	hypothetical protein
211	 52.39	+1	230465..232054	-	529	15600982	-	VCA0213	-	hypothetical protein
212	 49.88	0	232449..233693	-	414	15600983	emrD	VCA0214	-	multidrug resistance protein D
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.