IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
65	 50.33	0	73023..75329	+	768	15600836	-	VCA0065	-	hypothetical protein
66	 50.59	0	75326..76768	+	480	15600837	-	VCA0066	-	hypothetical protein
67	 52.41	+1	76765..77325	+	186	15600838	-	VCA0067	-	hypothetical protein
68	 48.48	0	77459..79102	-	547	15600839	-	VCA0068	-	methyl-accepting chemotaxis protein
69	 38.38	-1	79249..79347	+	32	15600840	-	VCA0069	-	hypothetical protein
70	 46.44	0	79395..80294	+	299	15600841	-	VCA0070	-	phosphate ABC transporter, periplasmic phosphate-binding protein
71	 50.20	0	80309..81292	+	327	15600842	-	VCA0071	-	phosphate ABC transporter, permease protein
72	 48.16	0	81292..82161	+	289	15600843	-	VCA0072	-	phosphate ABC transporter, permease protein
73	 47.62	0	82190..82945	+	251	15600844	-	VCA0073	-	phosphate ABC transporter, ATP-binding protein
74	 45.14	0	82992..84092	-	366	15600845	-	VCA0074	-	GGDEF family protein
75	 41.88	0	84089..84556	-	155	15600846	-	VCA0075	-	hypothetical protein
76	 48.95	0	84847..86223	-	458	15600847	-	VCA0076	-	hypothetical protein
77	 49.58	0	86658..88319	-	553	15600848	-	VCA0077	-	sulfate permease family protein
78	 40.84	-1	88624..88956	+	110	15600849	-	VCA0078	-	hypothetical protein
79	 47.80	0	89148..90440	+	430	15600850	-	VCA0079	-	hypothetical protein
80	 42.65	0	90558..92381	-	607	15600851	-	VCA0080	-	GGDEF family protein
81	 36.19	-2	92442..92546	+	34	15600852	-	VCA0081	-	hypothetical protein
82	 48.87	0	92604..93491	-	295	15600853	-	VCA0082	-	LysR family transcriptional regulator
83	 48.84	0	93581..94792	+	403	15600854	-	VCA0083	-	multidrug resistance protein D
84	 47.43	0	94834..95280	-	148	15600855	-	VCA0084	-	soxR protein
85	 46.63	0	95459..96661	+	400	15600856	-	VCA0085	-	hypothetical protein
86	 45.67	0	96762..97142	+	126	15600857	-	VCA0086	-	hypothetical protein
87	 38.18	-1	97216..97380	+	54	15600858	-	VCA0087	-	hypothetical protein
88	 49.41	0	97546..98820	-	424	15600859	-	VCA0088	-	proton/glutamate symporter
89	 37.98	-1	98848..98976	+	42	15600860	-	VCA0089	-	hypothetical protein
90	 51.34	+1	99076..99969	-	297	15600861	-	VCA0090	-	hypothetical protein
91	 46.13	0	100199..100495	+	98	15600862	-	VCA0091	-	hypothetical protein
92	 45.40	0	100666..101295	-	209	15600863	-	VCA0092	-	hypothetical protein
93	 41.38	0	101395..101568	+	57	15600864	-	VCA0093	-	hypothetical protein
94	 42.02	0	101796..102152	+	118	15600865	-	VCA0094	-	hypothetical protein
95	 47.07	0	102421..103119	+	232	15600866	-	VCA0095	-	hypothetical protein
96	 46.41	0	103162..104385	+	407	15600867	-	VCA0096	-	hypothetical protein
97	 49.09	0	104398..105114	-	238	15600868	-	VCA0097	-	hypothetical protein
98	 47.78	0	105513..106820	+	435	15600869	-	VCA0098	-	nicotinate phosphoribosyltransferase
99	 49.76	0	106851..107891	+	346	15600870	-	VCA0099	-	Gfo/Idh/MocA family oxidoreductase
100	 49.19	0	107928..108299	-	123	15600871	-	VCA0100	-	phage shock protein E
101	 44.51	0	108299..109855	-	518	15600872	-	VCA0101	-	hypothetical protein
102	 48.33	0	110031..110690	-	219	15600873	-	VCA0102	-	CbbY family protein
103	 51.04	+1	110871..112649	+	592	15600874	-	VCA0103	-	sulfate permease family protein
104	 47.45	0	112691..113356	-	221	15600875	-	VCA0104	-	ribosomal large subunit pseudouridine synthase A
105	 54.74	+1	115142..115426	+	94	15600876	-	VCA0105	-	hypothetical protein
106	 46.00	0	115341..116414	+	357	15600877	-	VCA0106	-	hypothetical protein
107	 47.73	0	116846..117352	+	168	15600878	-	VCA0107	-	hypothetical protein
108	 47.19	0	117393..118871	+	492	15600879	-	VCA0108	-	hypothetical protein
109	 47.49	0	118874..119311	+	145	15600880	-	VCA0109	-	hypothetical protein
110	 48.02	0	119317..121086	+	589	15600881	-	VCA0110	-	hypothetical protein
111	 51.33	+1	121050..122066	+	338	15600882	-	VCA0111	-	hypothetical protein
112	 49.66	0	122069..123556	+	495	15600883	-	VCA0112	-	hypothetical protein
113	 46.75	0	123559..124035	+	158	15600884	-	VCA0113	-	hypothetical protein
114	 52.13	+1	124042..125376	+	444	15600885	-	VCA0114	-	hypothetical protein
115	 48.58	0	125379..126152	+	257	15600886	-	VCA0115	-	hypothetical protein
116	 50.96	+1	126178..128787	+	869	15600887	-	VCA0116	-	clpB protein
117	 51.10	+1	128790..130382	+	530	15600888	-	VCA0117	-	sigma-54 dependent transcriptional regulator
118	 54.39	+1	130352..131035	+	227	15600889	-	VCA0118	-	hypothetical protein
119	 51.42	+1	131045..132454	+	469	15600890	-	VCA0119	-	hypothetical protein
120	 48.34	0	132470..136015	+	1181	15600891	-	VCA0120	-	IcmF-related protein
121	 49.29	0	136063..137328	+	421	15600892	-	VCA0121	-	hypothetical protein
122	 41.98	0	137379..137621	+	80	15600893	-	VCA0122	-	hypothetical protein
123	 47.09	0	137581..140634	+	1017	15600894	-	VCA0123	-	vgrG protein
124	 34.15	-2	140631..140999	+	122	15600895	-	VCA0124	-	hypothetical protein
125	 45.59	0	141147..141407	-	86	15600896	-	VCA0125	-	hypothetical protein
126	 40.48	-1	141382..141591	+	69	15600897	-	VCA0126	-	hypothetical protein
127	 47.13	0	141640..142110	+	156	15600898	-	VCA0127	-	D-ribose pyranase
128	 49.90	0	142137..143639	+	500	15600899	-	VCA0128	-	D-ribose transporter ATP binding protein
129	 50.35	0	143636..144634	+	332	15600900	rbsC	VCA0129	-	ribose ABC transporter permease protein
130	 51.07	+1	144693..145577	+	294	15600901	-	VCA0130	-	D-ribose transporter subunit RbsB
131	 50.49	0	145716..146636	+	306	15600902	-	VCA0131	-	ribokinase
132	 49.75	0	146647..147651	+	334	15600903	-	VCA0132	-	ribose operon repressor
133	 51.50	+1	148508..149239	+	243	15600904	-	VCA0134	-	uridine phosphorylase
134	 50.07	0	149379..150059	+	226	15600905	-	VCA0135	-	cyclic nucleotide binding protein, putative
135	 47.66	0	150112..151179	-	355	161582045	glpQ	VCA0136	-	glycerophosphodiester phosphodiesterase
136	 50.48	0	151333..152691	-	452	161582044	glpT	VCA0137	-	sn-glycerol-3-phosphate transporter
137	 27.78	-2	152838..152945	-	35	15600908	-	VCA0138	-	hypothetical protein
138	 44.25	0	153117..153464	-	115	15600909	-	VCA0139	-	hypothetical protein
139	 50.70	0	153872..155080	+	402	15600910	-	VCA0140	-	spindolin-related protein
140	 50.95	+1	155195..157249	-	684	15600911	-	VCA0141	-	C4-dicarboxylate transport sensor protein, putative
141	 54.25	+1	157539..158891	+	450	15600912	-	VCA0142	-	C4-dicarboxylate transport transcriptional regulatory protein
142	 41.44	0	158957..159067	+	36	15600913	-	VCA0143	-	hypothetical protein
143	 51.61	+1	159145..160200	+	351	15600914	-	VCA0144	-	immunogenic protein
144	 46.51	0	160169..160297	-	42	15600915	-	VCA0145	-	hypothetical protein
145	 52.72	+1	160350..162515	+	721	15600916	-	VCA0146	-	hypothetical protein
146	 50.00	0	162512..163723	+	403	15600917	-	VCA0147	-	hypothetical protein
147	 50.22	0	163832..167839	+	1335	15600918	-	VCA0148	-	TagA-related protein
148	 37.04	-1	167864..167971	+	35	15600919	-	VCA0149	-	hypothetical protein
149	 48.72	0	167987..168493	+	168	15600920	def	VCA0150	-	peptide deformylase
150	 46.93	0	168622..169974	+	450	15600921	-	VCA0151	-	oxidoreductase, putative
151	 51.54	+1	170049..170372	-	107	15600922	-	VCA0152	-	putative monovalent cation/H+ antiporter subunit G
152	 44.87	0	170372..170683	-	103	15600923	-	VCA0153	-	putative monovalent cation/H+ antiporter subunit F
153	 47.38	0	170643..171119	-	158	15600924	-	VCA0154	-	hypothetical protein
154	 48.96	0	171116..172612	-	498	15600925	-	VCA0155	-	NADH dehydrogenase, putative
155	 50.56	0	172609..172962	-	117	15600926	-	VCA0156	-	putative monovalent cation/H+ antiporter subunit C
156	 49.40	0	172962..175637	-	891	15600927	-	VCA0157	-	NADH dehydrogenase, putative
157	 48.76	0	175784..175984	-	66	15600928	-	VCA0158	-	hypothetical protein
158	 46.50	0	176056..176997	-	313	15600929	-	VCA0159	-	hypothetical protein
159	 47.90	0	177193..178428	-	411	15600930	-	VCA0160	-	tryptophan-specific transport protein
160	 47.92	0	178507..179925	-	472	15600931	tnaA	VCA0161	-	tryptophanase
161	 36.71	-1	180491..180697	-	68	15600932	-	VCA0162	-	hypothetical protein
162	 37.56	-1	180706..180918	+	70	15600933	-	VCA0163	-	hypothetical protein
163	 45.64	0	180988..181572	-	194	15600934	-	VCA0164	-	hypothetical protein
164	 46.41	0	181879..184011	+	710	15600935	-	VCA0165	-	GGDEF family protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.