IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).



No rRNA data available

A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 45.97   STD DEV: 4.79
Vibrio cholerae O1 biovar eltor str. N16961 chromosome II, complete sequence - 1..1072315
1093 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
962	 47.46	0	927422..928306	-	294	15601732	-	VCA0979	-	methyl-accepting chemotaxis protein
963	 43.10	0	928326..928970	-	214	15601733	-	VCA0980	-	hypothetical protein
964	 45.83	0	929101..929844	-	247	15601734	-	VCA0981	-	hypothetical protein
965	 48.67	0	929998..930897	-	299	15601735	-	VCA0982	-	LysR family transcriptional regulator
966	 52.60	+1	931049..932797	+	582	15601736	-	VCA0983	-	L-lactate permease, putative
967	 54.00	+1	932920..934056	+	378	15601737	lldD	VCA0984	-	L-lactate dehydrogenase
968	 53.44	+1	934154..937033	+	959	15601738	-	VCA0985	-	oxidoreductase/iron-sulfur cluster-binding protein
969	 50.24	0	937117..937950	-	277	15601739	-	VCA0986	-	hypothetical protein
970	 51.91	+1	938085..940496	+	803	15601740	-	VCA0987	-	phosphoenolpyruvate synthase
971	 48.04	0	940679..942235	+	518	15601741	-	VCA0988	-	methyl-accepting chemotaxis protein
972	 50.64	0	942593..943927	+	444	15601742	-	VCA0989	-	hypothetical protein
973	 50.89	+1	944006..945292	-	428	15601743	-	VCA0990	-	DEAD-box ATP dependent DNA helicase
974	 49.30	0	945384..946310	-	308	15601744	-	VCA0991	-	LysR family transcriptional regulator
975	 46.12	0	946431..947087	+	218	15601745	-	VCA0992	-	glutaredoxin 2
976	 50.54	0	947097..948200	+	367	15601746	-	VCA0993	-	N-ethylmaleimide reductase
977	 49.64	0	948321..949301	-	326	15601747	-	VCA0994	-	hypothetical protein
978	 50.98	+1	949434..949535	+	33	15601748	-	VCA0995	-	hypothetical protein
979	 50.70	0	949658..951517	+	619	15601749	-	VCA0996	-	ABC transporter, ATP-binding protein
980	 49.17	0	951648..952373	+	241	15601750	-	VCA0997	-	hypothetical protein
981	 52.59	+1	952463..953506	-	347	15601751	-	VCA0998	-	Oye family NADH-dependent flavin oxidoreductase
982	 49.31	0	953656..954231	+	191	15601752	-	VCA0999	-	TetR family transcriptional regulator
983	 52.86	+1	954303..954932	-	209	15601753	-	VCA1000	-	hypothetical protein
984	 51.92	+1	955133..955966	+	277	15601754	-	VCA1001	-	AraC/XylS family transcriptional regulator
985	 52.22	+1	956118..956837	+	239	15601755	-	VCA1002	-	AzlC family protein
986	 51.26	+1	956834..957151	+	105	15601756	-	VCA1003	-	hypothetical protein
987	 48.62	0	957203..957817	-	204	15601757	-	VCA1004	-	hypothetical protein
988	 47.06	0	957933..958391	-	152	15601758	-	VCA1005	-	MarR family transcriptional regulator
989	 52.28	+1	958488..958925	+	145	15601759	-	VCA1006	-	organic hydroperoxide resistance protein, putative
990	 50.51	0	958939..959037	-	32	15601760	-	VCA1007	-	hypothetical protein
991	 47.29	0	959181..960176	+	331	15601761	-	VCA1008	-	outer membrane protein, putative
992	 43.33	0	960202..960321	+	39	15601762	-	VCA1009	-	hypothetical protein
993	 52.95	+1	960337..961233	+	298	15601763	-	VCA1010	-	hypothetical protein
994	 47.57	0	961260..961898	+	212	15601764	-	VCA1011	-	glutaredoxin-related protein
995	 48.08	0	962112..962579	-	155	15601765	-	VCA1012	-	hypothetical protein
996	 49.45	0	962576..963307	-	243	15601766	-	VCA1013	-	hypothetical protein
997	 37.25	-1	963470..963571	-	33	15601767	-	VCA1014	-	hypothetical protein
998	 49.30	0	963699..965132	+	477	15601768	-	VCA1015	-	Na+/H+ antiporter
999	 46.02	0	965198..965599	-	133	15601769	-	VCA1016	-	hypothetical protein
1000	 49.37	0	965610..966083	-	157	15601770	-	VCA1017	-	methylated-DNA--protein-cysteine S-methyltransferase
1001	 50.48	0	966084..967442	-	452	15601771	-	VCA1018	-	ada regulatory protein
1002	 50.34	0	967698..968144	+	148	15601772	-	VCA1019	-	hypothetical protein
1003	 48.43	0	968221..969141	-	306	15601773	-	VCA1020	-	LysR family transcriptional regulator
1004	 45.28	0	969256..969615	+	119	15601774	-	VCA1021	-	hypothetical protein
1005	 48.44	0	969661..969885	+	74	15601775	-	VCA1022	-	hypothetical protein
1006	 46.83	0	969825..971684	+	619	15601776	-	VCA1023	-	hypothetical protein
1007	 44.15	0	971811..972152	-	113	15601777	-	VCA1024	-	hypothetical protein
1008	 45.94	0	972427..973227	+	266	15601778	nagB	VCA1025	-	glucosamine-6-phosphate deaminase
1009	 47.84	0	973358..974515	-	385	15601779	-	VCA1026	-	hypothetical protein
1010	 46.24	0	974668..975504	-	278	15601780	-	VCA1027	-	maltose operon periplasmic protein, putative
1011	 44.04	0	975709..976959	-	416	15601781	lamB	VCA1028	-	maltoporin
1012	 47.29	0	977379..979349	+	656	15601782	-	VCA1029	-	glycogen operon protein GlgX
1013	 48.81	0	979484..979735	+	83	15601783	-	VCA1030	-	hypothetical protein
1014	 45.83	0	981942..982349	-	135	15601784	-	VCA1032	-	hypothetical protein
1015	 48.58	0	982617..983993	-	458	15601785	-	VCA1033	-	extracellular solute-binding protein, putative
1016	 50.12	0	984002..986002	-	666	15601786	-	VCA1034	-	methyl-accepting chemotaxis protein
1017	 45.60	0	986116..986433	+	105	15601787	-	VCA1035	-	hypothetical protein
1018	 48.89	0	987883..988602	+	239	15601788	-	VCA1037	-	amino acid ABC transporter, ATP-binding protein
1019	 51.81	+1	988599..989399	+	266	15601789	-	VCA1038	-	amino acid ABC transporter, permease protein
1020	 50.18	0	989435..990271	+	278	15601790	-	VCA1039	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1021	 51.62	+1	990272..991168	+	298	15601791	-	VCA1040	-	amino acid ABC transporter, permease protein
1022	 54.05	+1	991281..992984	+	567	15601792	-	VCA1041	-	phosphomannomutase, putative
1023	 40.30	-1	993043..993444	-	133	15601793	-	VCA1042	-	Ccm2-related protein
1024	 40.00	-1	993354..994298	-	314	15601794	-	VCA1043	-	tagE protein
1025	 26.39	-2	994599..994742	+	47	15601795	-	VCA1044	-	hypothetical protein
1026	 49.13	0	994881..996830	+	649	15601796	-	VCA1045	-	PTS system, mannitol-specific IIABC component
1027	 49.35	0	996931..998085	+	384	15601797	-	VCA1046	-	mannitol-1-phosphate 5-dehydrogenase
1028	 45.19	0	998134..998715	+	193	15601798	mtlR	VCA1047	-	mannitol repressor protein
1029	 49.25	0	998829..999764	+	311	15601799	-	VCA1048	-	Gfo/Idh/MocA family oxidoreductase
1030	 46.76	0	999865..1000743	-	292	15601800	-	VCA1049	-	hypothetical protein
1031	 49.24	0	1000877..1001800	+	307	15601801	-	VCA1050	-	hypothetical protein
1032	 48.15	0	1001797..1002228	-	143	15601802	-	VCA1051	-	hypothetical protein
1033	 52.84	+1	1002304..1003026	-	240	15601803	-	VCA1052	-	hypothetical protein
1034	 50.30	0	1003208..1003708	-	166	15601804	-	VCA1053	-	hypothetical protein
1035	 53.83	+1	1003730..1004368	-	212	15601805	-	VCA1054	-	hypothetical protein
1036	 49.35	0	1004468..1005391	+	307	15601806	-	VCA1055	-	LysR family transcriptional regulator
1037	 47.90	0	1005434..1007746	-	770	15601807	-	VCA1056	-	methyl-accepting chemotaxis protein
1038	 51.11	+1	1008136..1008855	-	239	15601808	-	VCA1057	-	short chain dehydrogenase/reductase family oxidoreductase
1039	 50.33	0	1009003..1009908	+	301	15601809	-	VCA1058	-	LysR family transcriptional regulator
1040	 48.71	0	1010002..1010619	+	205	15601810	-	VCA1059	-	hypothetical protein
1041	 51.60	+1	1010684..1011340	-	218	15601811	ribB	VCA1060	-	3,4-dihydroxy-2-butanone 4-phosphate synthase
1042	 41.48	0	1011647..1011781	+	44	15601812	-	VCA1061	-	hypothetical protein
1043	 50.76	0	1011799..1013118	-	439	15601813	-	VCA1062	-	putrescine transporter
1044	 49.93	0	1013186..1015348	-	720	15601814	-	VCA1063	-	ornithine decarboxylase
1045	 39.02	-1	1015489..1015611	+	40	15601815	-	VCA1064	-	hypothetical protein
1046	 40.65	-1	1015688..1015810	-	40	15601816	-	VCA1065	-	hypothetical protein
1047	 47.08	0	1016102..1016341	-	79	15601817	-	VCA1066	-	hypothetical protein
1048	 50.31	0	1016331..1017773	-	480	15601818	-	VCA1067	-	aldehyde dehydrogenase
1049	 46.79	0	1017946..1018428	-	160	15601819	-	VCA1068	-	AsnC family transcriptional regulator
1050	 51.04	+1	1018626..1020545	-	639	15601820	-	VCA1069	-	methyl-accepting chemotaxis protein
1051	 47.75	0	1020875..1021096	-	73	15601821	-	VCA1070	-	hypothetical protein
1052	 51.78	+1	1021280..1022770	-	496	15601822	-	VCA1071	-	sodium/proline symporter
1053	 48.50	0	1022843..1023541	-	232	15601823	-	VCA1072	-	hypothetical protein
1054	 48.84	0	1027022..1027885	-	287	15601824	-	VCA1074	-	AraC/XylS family transcriptional regulator
1055	 45.88	0	1028244..1029383	+	379	15601825	-	VCA1075	-	hypothetical protein
1056	 39.68	-1	1029350..1029475	+	41	15601826	-	VCA1076	-	hypothetical protein
1057	 47.74	0	1029543..1031360	+	605	15601827	-	VCA1077	-	hypothetical protein
1058	 47.08	0	1031460..1032419	+	319	15601828	-	VCA1078	-	LuxR family transcriptional regulator
1059	 48.90	0	1032448..1033083	-	211	15601829	-	VCA1079	-	pyridoxamine 5'-phosphate oxidase
1060	 47.58	0	1033253..1034698	+	481	15601830	-	VCA1080	-	HlyD family secretion protein
1061	 44.34	0	1034707..1035369	+	220	15601831	-	VCA1081	-	hypothetical protein
45.97	MEAN

4.79	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.