version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 866 45.35 0 940625..940882 + 85 15640894 rpmE2 VC0878 - 50S ribosomal protein L31 type B 867 46.03 0 940879..941004 + 41 15640895 rpmJ VC0879 - 50S ribosomal protein L36 868 49.72 0 941187..942791 + 534 15640896 - VC0880 - hypothetical protein 869 54.22 +1 942857..943306 - 149 15640897 - VC0881 - hypothetical protein 870 49.67 0 943303..943602 - 99 15640898 - VC0882 - hypothetical protein 871 34.21 -2 944215..944328 - 37 15640899 - VC0883 - hypothetical protein 872 48.08 0 944367..944990 + 207 15640900 - VC0884 - acetyltransferase-related protein 873 48.84 0 944947..945249 - 100 15640901 - VC0885 - hypothetical protein 874 50.96 0 945253..946290 - 345 15640902 - VC0886 - hypothetical protein 875 52.88 +1 946379..946690 + 103 15640903 - VC0887 - hypothetical protein 876 50.48 0 946691..947425 + 244 15640904 - VC0888 - tRNA pseudouridine synthase C 877 51.83 +1 947523..949403 - 626 15640905 - VC0889 - 1-deoxy-D-xylulose-5-phosphate synthase 878 51.41 0 949423..950307 - 294 15640906 - VC0890 - geranyltranstransferase 879 51.85 +1 950349..950591 - 80 15640907 - VC0891 - exodeoxyribonuclease VII small subunit 880 49.41 0 950906..951670 + 254 15640908 - VC0892 - flagellar motor protein PomA 881 50.26 0 951682..952638 + 318 15640909 motB VC0893 - flagellar motor protein MotB 882 48.13 0 952846..954393 + 515 15640910 - VC0894 - thiamine biosynthesis protein ThiI 883 38.98 -1 954684..954860 - 58 15640911 - VC0895 - hypothetical protein 884 47.01 0 955014..955934 + 306 15640912 - VC0896 - DNA-binding transcriptional activator GcvA 885 51.42 0 955956..956342 + 128 15640913 - VC0897 - hypothetical protein 886 48.47 0 956372..957223 - 283 15640914 xni VC0898 - exonuclease IX 887 49.49 0 957262..958635 - 457 15640915 - VC0899 - hypothetical protein 888 47.49 0 958840..960414 - 524 15640916 - VC0900 - GGDEF family protein 889 42.93 -1 960516..962777 - 753 15640917 - VC0901 - hypothetical protein 890 49.41 0 962792..963637 - 281 161582018 queF VC0902 - 7-cyano-7-deazaguanine reductase 891 50.25 0 963686..964282 + 198 15640919 - VC0903 - SecY interacting protein Syd 892 50.71 0 964284..965060 + 258 15640920 - VC0904 - hypothetical protein 893 47.28 0 965193..966002 - 269 161582017 metQ VC0905 - DL-methionine transporter substrate-binding subunit 894 53.39 +1 966039..966716 - 225 15640922 - VC0906 - ABC transporter, permease protein 895 48.89 0 966706..967740 - 344 15640923 metN VC0907 - DL-methionine transporter ATP-binding subunit 896 49.02 0 967976..968536 + 186 15640924 - VC0908 - D,D-heptose 1,7-bisphosphate phosphatase 897 49.21 0 968601..969551 + 316 15640925 treR VC0909 - trehalose repressor 898 49.97 0 969788..971224 + 478 15640926 - VC0910 - trehalose(maltose)-specific PTS system components IIBC 899 47.07 0 971304..972992 + 562 15640927 - VC0911 - trehalose-6-phosphate hydrolase 900 40.62 -1 973767..973862 + 31 15640928 - VC0912 - hypothetical protein 901 49.29 0 974049..975107 + 352 15640929 - VC0913 - hypothetical protein 902 49.69 0 975107..978217 + 1036 15640930 - VC0914 - multidrug resistance protein, putative 903 36.04 -2 978272..978382 + 36 15640931 - VC0915 - hypothetical protein 904 41.32 -1 978644..979144 + 166 15640932 - VC0916 - phosphotyrosine protein phosphatase 905 48.44 0 979457..980575 + 372 15640933 - VC0917 - UDP-N-acetylglucosamine 2-epimerase 906 47.83 0 980595..981836 + 413 15640934 wecC VC0918 - UDP-N-acetyl-D-mannosamine dehydrogenase 907 48.29 0 981833..982387 + 184 15640935 - VC0919 - serine acetyltransferase-related protein 908 42.99 -1 982384..983532 + 382 15640936 - VC0920 - exopolysaccharide biosynthesis protein EpsF, putative 909 43.62 0 983529..984938 + 469 15640937 - VC0921 - polysaccharide export protein, putative 910 42.42 -1 984935..986155 + 406 15640938 - VC0922 - hypothetical protein 911 44.91 0 986166..986597 + 143 15640939 - VC0923 - serine acetyltransferase-related protein 912 46.01 0 986597..987937 + 446 15640940 - VC0924 - capK protein, putative 913 46.81 0 987913..989010 + 365 15640941 - VC0925 - polysaccharide biosynthesis protein, putative 914 47.57 0 989007..990179 + 390 15640942 - VC0926 - hypothetical protein 915 46.48 0 990169..990921 + 250 15640943 - VC0927 - UDP-N-acetyl-D-mannosamine transferase 916 40.20 -1 991117..991932 + 271 15640944 - VC0928 - hypothetical protein 917 35.04 -2 992138..993364 - 408 15640945 - VC0929 - hypothetical protein 918 47.11 0 993628..996501 + 957 15640946 - VC0930 - hemolysin-related protein 919 45.03 0 996656..997972 - 438 15640947 - VC0931 - hypothetical protein 920 54.17 +1 998148..998435 - 95 15640948 - VC0932 - hypothetical protein 921 45.93 0 998348..998752 - 134 15640949 - VC0933 - hypothetical protein 922 45.06 0 999242..1000639 + 465 15640950 - VC0934 - capsular polysaccharide biosynthesis glycosyltransferase, putative 923 47.54 0 1000710..1001906 + 398 15640951 - VC0935 - hypothetical protein 924 46.02 0 1001910..1002437 + 175 15640952 - VC0936 - polysaccharide export-related protein 925 47.47 0 1002462..1004675 + 737 15640953 - VC0937 - exopolysaccharide biosynthesis protein, putative 926 50.71 0 1004672..1005379 + 235 15640954 - VC0938 - hypothetical protein 927 47.13 0 1005358..1005792 + 144 15640955 - VC0939 - hypothetical protein 928 46.06 0 1005943..1006539 - 198 15640956 - VC0940 - hypothetical protein 929 49.40 0 1006880..1008130 + 416 161582016 glyA VC0941 - serine hydroxymethyltransferase 930 44.07 0 1008294..1008647 - 117 15640958 - VC0942 - hypothetical protein 931 48.96 0 1008816..1009781 - 321 15640959 - VC0943 - lipoyl synthase 932 46.21 0 1009774..1010433 - 219 15640960 lipB VC0944 - lipoyltransferase 933 46.95 0 1010612..1010890 - 92 15640961 - VC0945 - hypothetical protein 934 44.64 0 1010912..1011079 + 55 15640962 - VC0946 - hypothetical protein 935 47.19 0 1011038..1012213 - 391 15640963 - VC0947 - D-alanyl-D-alanine carboxypeptidase 936 46.09 0 1012305..1013096 - 263 15640964 - VC0948 - rare lipoprotein A, putative 937 48.84 0 1013096..1014217 - 373 15640965 - VC0949 - rod shape-determining protein RodA 938 48.88 0 1014214..1016130 - 638 15640966 - VC0950 - penicillin-binding protein 2 939 51.38 0 1016137..1016607 - 156 15640967 - VC0951 - SPOUT methyltransferase superfamily protein 940 45.60 0 1016610..1016927 - 105 15640968 - VC0952 - hypothetical protein 941 49.47 0 1016996..1018024 - 342 15640969 holA VC0953 - DNA polymerase III subunit delta 942 47.82 0 1018030..1018671 - 213 15640970 - VC0954 - rare lipoprotein B 943 43.81 0 1018687..1018791 - 34 15640971 - VC0955 - hypothetical protein 944 49.16 0 1018821..1021505 - 894 15640972 leuS VC0956 - leucyl-tRNA synthetase 945 46.28 0 1021527..1021997 + 156 15640973 - VC0957 - hypothetical protein 946 51.19 0 1022053..1023570 - 505 15640974 lnt VC0958 - apolipoprotein N-acyltransferase 947 49.77 0 1023611..1024486 - 291 15640975 - VC0959 - hemolysin, putative 948 47.10 0 1024556..1025020 - 154 15640976 - VC0960 - putative metalloprotease 949 48.73 0 1025017..1026120 - 367 15640977 - VC0961 - phoH family protein 950 50.04 0 1026188..1027612 - 474 15640978 - VC0962 - hypothetical protein 951 50.42 0 1027836..1029029 + 397 15640979 - VC0963 - 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase 952 45.49 0 1029142..1029651 - 169 15640980 - VC0964 - glucose-specific PTS system component 953 46.17 0 1029760..1031481 - 573 15640981 - VC0965 - phosphoenolpyruvate-protein phosphotransferase 954 46.51 0 1031615..1031872 - 85 15640982 - VC0966 - phosphocarrier protein HPr 955 36.67 -2 1031957..1032166 - 69 15640983 - VC0967 - hypothetical protein 956 46.13 0 1032170..1033138 - 322 15640984 - VC0968 - cysteine synthase A 957 47.28 0 1033261..1034013 - 250 15640985 - VC0969 - putative sulfate transport protein CysZ 958 48.17 0 1034243..1035118 + 291 15640986 - VC0970 - cell division protein ZipA 959 48.21 0 1035251..1037260 + 669 15640987 ligA VC0971 - NAD-dependent DNA ligase LigA 960 45.14 0 1037891..1038940 + 349 15640988 - VC0972 - porin, putative 961 39.58 -1 1039017..1039832 + 271 15640989 - VC0973 - hypothetical protein 962 49.05 0 1039893..1040312 + 139 15640990 - VC0974 - MerR family transcriptional regulator 963 48.25 0 1040356..1040925 - 189 15640991 - VC0975 - hypothetical protein 964 45.49 0 1040813..1041733 - 306 15640992 - VC0976 - hypothetical protein 965 45.60 0 1042164..1043084 - 306 15640993 - VC0977 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.