IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
857	 52.62	+1	931849..935742	+	1297	15640885	-	VC0869	-	phosphoribosylformylglycinamidine synthase
858	 38.81	-2	935917..936354	+	145	15640886	-	VC0870	-	IS1004 transposase
859	 43.23	0	936465..936656	-	63	15640887	-	VC0871	-	hypothetical protein
860	 48.04	0	936662..936865	-	67	15640888	-	VC0872	-	hypothetical protein
861	 47.29	0	936968..937612	-	214	15640889	-	VC0873	-	hypothetical protein
862	 44.27	0	937645..937836	+	63	15640890	-	VC0874	-	hypothetical protein
863	 50.99	0	937854..939569	-	571	15640891	-	VC0875	-	prolyl-tRNA synthetase
864	 48.71	0	939795..940490	-	231	15640892	-	VC0876	-	hypothetical protein
865	 28.28	-2	940506..940604	-	32	15640893	-	VC0877	-	hypothetical protein
866	 45.35	0	940625..940882	+	85	15640894	rpmE2	VC0878	-	50S ribosomal protein L31 type B
867	 46.03	0	940879..941004	+	41	15640895	rpmJ	VC0879	-	50S ribosomal protein L36
868	 49.72	0	941187..942791	+	534	15640896	-	VC0880	-	hypothetical protein
869	 54.22	+1	942857..943306	-	149	15640897	-	VC0881	-	hypothetical protein
870	 49.67	0	943303..943602	-	99	15640898	-	VC0882	-	hypothetical protein
871	 34.21	-2	944215..944328	-	37	15640899	-	VC0883	-	hypothetical protein
872	 48.08	0	944367..944990	+	207	15640900	-	VC0884	-	acetyltransferase-related protein
873	 48.84	0	944947..945249	-	100	15640901	-	VC0885	-	hypothetical protein
874	 50.96	0	945253..946290	-	345	15640902	-	VC0886	-	hypothetical protein
875	 52.88	+1	946379..946690	+	103	15640903	-	VC0887	-	hypothetical protein
876	 50.48	0	946691..947425	+	244	15640904	-	VC0888	-	tRNA pseudouridine synthase C
877	 51.83	+1	947523..949403	-	626	15640905	-	VC0889	-	1-deoxy-D-xylulose-5-phosphate synthase
878	 51.41	0	949423..950307	-	294	15640906	-	VC0890	-	geranyltranstransferase
879	 51.85	+1	950349..950591	-	80	15640907	-	VC0891	-	exodeoxyribonuclease VII small subunit
880	 49.41	0	950906..951670	+	254	15640908	-	VC0892	-	flagellar motor protein PomA
881	 50.26	0	951682..952638	+	318	15640909	motB	VC0893	-	flagellar motor protein MotB
882	 48.13	0	952846..954393	+	515	15640910	-	VC0894	-	thiamine biosynthesis protein ThiI
883	 38.98	-1	954684..954860	-	58	15640911	-	VC0895	-	hypothetical protein
884	 47.01	0	955014..955934	+	306	15640912	-	VC0896	-	DNA-binding transcriptional activator GcvA
885	 51.42	0	955956..956342	+	128	15640913	-	VC0897	-	hypothetical protein
886	 48.47	0	956372..957223	-	283	15640914	xni	VC0898	-	exonuclease IX
887	 49.49	0	957262..958635	-	457	15640915	-	VC0899	-	hypothetical protein
888	 47.49	0	958840..960414	-	524	15640916	-	VC0900	-	GGDEF family protein
889	 42.93	-1	960516..962777	-	753	15640917	-	VC0901	-	hypothetical protein
890	 49.41	0	962792..963637	-	281	161582018	queF	VC0902	-	7-cyano-7-deazaguanine reductase
891	 50.25	0	963686..964282	+	198	15640919	-	VC0903	-	SecY interacting protein Syd
892	 50.71	0	964284..965060	+	258	15640920	-	VC0904	-	hypothetical protein
893	 47.28	0	965193..966002	-	269	161582017	metQ	VC0905	-	DL-methionine transporter substrate-binding subunit
894	 53.39	+1	966039..966716	-	225	15640922	-	VC0906	-	ABC transporter, permease protein
895	 48.89	0	966706..967740	-	344	15640923	metN	VC0907	-	DL-methionine transporter ATP-binding subunit
896	 49.02	0	967976..968536	+	186	15640924	-	VC0908	-	D,D-heptose 1,7-bisphosphate phosphatase
897	 49.21	0	968601..969551	+	316	15640925	treR	VC0909	-	trehalose repressor
898	 49.97	0	969788..971224	+	478	15640926	-	VC0910	-	trehalose(maltose)-specific PTS system components IIBC
899	 47.07	0	971304..972992	+	562	15640927	-	VC0911	-	trehalose-6-phosphate hydrolase
900	 40.62	-1	973767..973862	+	31	15640928	-	VC0912	-	hypothetical protein
901	 49.29	0	974049..975107	+	352	15640929	-	VC0913	-	hypothetical protein
902	 49.69	0	975107..978217	+	1036	15640930	-	VC0914	-	multidrug resistance protein, putative
903	 36.04	-2	978272..978382	+	36	15640931	-	VC0915	-	hypothetical protein
904	 41.32	-1	978644..979144	+	166	15640932	-	VC0916	-	phosphotyrosine protein phosphatase
905	 48.44	0	979457..980575	+	372	15640933	-	VC0917	-	UDP-N-acetylglucosamine 2-epimerase
906	 47.83	0	980595..981836	+	413	15640934	wecC	VC0918	-	UDP-N-acetyl-D-mannosamine dehydrogenase
907	 48.29	0	981833..982387	+	184	15640935	-	VC0919	-	serine acetyltransferase-related protein
908	 42.99	-1	982384..983532	+	382	15640936	-	VC0920	-	exopolysaccharide biosynthesis protein EpsF, putative
909	 43.62	0	983529..984938	+	469	15640937	-	VC0921	-	polysaccharide export protein, putative
910	 42.42	-1	984935..986155	+	406	15640938	-	VC0922	-	hypothetical protein
911	 44.91	0	986166..986597	+	143	15640939	-	VC0923	-	serine acetyltransferase-related protein
912	 46.01	0	986597..987937	+	446	15640940	-	VC0924	-	capK protein, putative
913	 46.81	0	987913..989010	+	365	15640941	-	VC0925	-	polysaccharide biosynthesis protein, putative
914	 47.57	0	989007..990179	+	390	15640942	-	VC0926	-	hypothetical protein
915	 46.48	0	990169..990921	+	250	15640943	-	VC0927	-	UDP-N-acetyl-D-mannosamine transferase
916	 40.20	-1	991117..991932	+	271	15640944	-	VC0928	-	hypothetical protein
917	 35.04	-2	992138..993364	-	408	15640945	-	VC0929	-	hypothetical protein
918	 47.11	0	993628..996501	+	957	15640946	-	VC0930	-	hemolysin-related protein
919	 45.03	0	996656..997972	-	438	15640947	-	VC0931	-	hypothetical protein
920	 54.17	+1	998148..998435	-	95	15640948	-	VC0932	-	hypothetical protein
921	 45.93	0	998348..998752	-	134	15640949	-	VC0933	-	hypothetical protein
922	 45.06	0	999242..1000639	+	465	15640950	-	VC0934	-	capsular polysaccharide biosynthesis glycosyltransferase, putative
923	 47.54	0	1000710..1001906	+	398	15640951	-	VC0935	-	hypothetical protein
924	 46.02	0	1001910..1002437	+	175	15640952	-	VC0936	-	polysaccharide export-related protein
925	 47.47	0	1002462..1004675	+	737	15640953	-	VC0937	-	exopolysaccharide biosynthesis protein, putative
926	 50.71	0	1004672..1005379	+	235	15640954	-	VC0938	-	hypothetical protein
927	 47.13	0	1005358..1005792	+	144	15640955	-	VC0939	-	hypothetical protein
928	 46.06	0	1005943..1006539	-	198	15640956	-	VC0940	-	hypothetical protein
929	 49.40	0	1006880..1008130	+	416	161582016	glyA	VC0941	-	serine hydroxymethyltransferase
930	 44.07	0	1008294..1008647	-	117	15640958	-	VC0942	-	hypothetical protein
931	 48.96	0	1008816..1009781	-	321	15640959	-	VC0943	-	lipoyl synthase
932	 46.21	0	1009774..1010433	-	219	15640960	lipB	VC0944	-	lipoyltransferase
933	 46.95	0	1010612..1010890	-	92	15640961	-	VC0945	-	hypothetical protein
934	 44.64	0	1010912..1011079	+	55	15640962	-	VC0946	-	hypothetical protein
935	 47.19	0	1011038..1012213	-	391	15640963	-	VC0947	-	D-alanyl-D-alanine carboxypeptidase
936	 46.09	0	1012305..1013096	-	263	15640964	-	VC0948	-	rare lipoprotein A, putative
937	 48.84	0	1013096..1014217	-	373	15640965	-	VC0949	-	rod shape-determining protein RodA
938	 48.88	0	1014214..1016130	-	638	15640966	-	VC0950	-	penicillin-binding protein 2
939	 51.38	0	1016137..1016607	-	156	15640967	-	VC0951	-	SPOUT methyltransferase superfamily protein
940	 45.60	0	1016610..1016927	-	105	15640968	-	VC0952	-	hypothetical protein
941	 49.47	0	1016996..1018024	-	342	15640969	holA	VC0953	-	DNA polymerase III subunit delta
942	 47.82	0	1018030..1018671	-	213	15640970	-	VC0954	-	rare lipoprotein B
943	 43.81	0	1018687..1018791	-	34	15640971	-	VC0955	-	hypothetical protein
944	 49.16	0	1018821..1021505	-	894	15640972	leuS	VC0956	-	leucyl-tRNA synthetase
945	 46.28	0	1021527..1021997	+	156	15640973	-	VC0957	-	hypothetical protein
946	 51.19	0	1022053..1023570	-	505	15640974	lnt	VC0958	-	apolipoprotein N-acyltransferase
947	 49.77	0	1023611..1024486	-	291	15640975	-	VC0959	-	hemolysin, putative
948	 47.10	0	1024556..1025020	-	154	15640976	-	VC0960	-	putative metalloprotease
949	 48.73	0	1025017..1026120	-	367	15640977	-	VC0961	-	phoH family protein
950	 50.04	0	1026188..1027612	-	474	15640978	-	VC0962	-	hypothetical protein
951	 50.42	0	1027836..1029029	+	397	15640979	-	VC0963	-	2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase
952	 45.49	0	1029142..1029651	-	169	15640980	-	VC0964	-	glucose-specific PTS system component
953	 46.17	0	1029760..1031481	-	573	15640981	-	VC0965	-	phosphoenolpyruvate-protein phosphotransferase
954	 46.51	0	1031615..1031872	-	85	15640982	-	VC0966	-	phosphocarrier protein HPr
955	 36.67	-2	1031957..1032166	-	69	15640983	-	VC0967	-	hypothetical protein
956	 46.13	0	1032170..1033138	-	322	15640984	-	VC0968	-	cysteine synthase A
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.