IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
746	 48.25	0	807964..808392	+	142	15640775	ndk	VC0756	-	nucleoside diphosphate kinase
747	 47.86	0	808566..809687	+	373	15640776	-	VC0757	-	hypothetical protein
748	 48.90	0	809902..811083	+	393	15640777	-	VC0758	-	hypothetical protein
749	 50.04	0	811088..812218	+	376	15640778	ispG	VC0759	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
750	 49.65	0	812244..813512	+	422	15640779	hisS	VC0760	-	histidyl-tRNA synthetase
751	 49.11	0	813549..814163	+	204	15640780	-	VC0761	-	hypothetical protein
752	 51.59	0	814176..815336	+	386	15640781	-	VC0762	-	outer membrane protein assembly complex subunit YfgL
753	 49.23	0	815529..817013	+	494	15640782	engA	VC0763	-	GTP-binding protein EngA
754	 46.30	0	817034..817951	+	305	15640783	-	VC0764	-	hypothetical protein
755	 44.44	0	818256..818489	+	77	15640784	-	VC0765	-	hypothetical protein
756	 49.59	0	818470..819810	-	446	15640785	xseA	VC0766	-	exodeoxyribonuclease VII large subunit
757	 49.80	0	820012..821481	+	489	15640786	-	VC0767	-	inositol-5-monophosphate dehydrogenase
758	 48.78	0	821588..823141	+	517	15640787	guaA	VC0768	-	bifunctional GMP synthase/glutamine amidotransferase protein
759	 49.80	0	823377..825101	+	574	15640788	-	VC0769	-	chitinase, putative
760	 49.16	0	825292..825885	+	197	15640789	-	VC0770	-	hypothetical protein
761	 48.41	0	826197..827078	+	293	15640790	-	VC0771	-	vibriobactin-specific isochorismatase
762	 50.67	0	827179..828810	-	543	15640791	-	VC0772	-	vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase
763	 51.85	+1	828821..830008	-	395	15640792	-	VC0773	-	vibriobactin-specific isochorismate synthase
764	 50.44	0	830176..830964	+	262	15640793	-	VC0774	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
765	 50.80	0	830976..832292	-	438	15640794	-	VC0775	-	vibriobactin synthesis protein, putative
766	 49.59	0	832470..833447	+	325	15640795	-	VC0776	-	iron-enterobactin transporter periplasmic binding protein
767	 52.80	+1	833444..834496	+	350	15640796	-	VC0777	-	ferric vibriobactin ABC transporter, permease protein
768	 52.27	+1	834475..835551	+	358	15640797	-	VC0778	-	ferric vibriobactin ABC transporter, permease protein
769	 50.95	0	835668..836507	+	279	15640798	-	VC0779	-	ferric vibriobactin ABC transporter, ATP-binding protein
770	 49.75	0	836438..837223	+	261	15640799	-	VC0780	-	vibriobactin synthase component D
771	 47.03	0	837233..838159	+	308	15640800	-	VC0781	-	LysR family transcriptional regulator
772	 47.75	0	838152..838262	-	36	15640801	-	VC0782	-	hypothetical protein
773	 48.56	0	838377..840359	+	660	15640802	-	VC0783	-	hypothetical protein
774	 50.42	0	840439..841989	-	516	15640803	-	VC0784	-	sodium/alanine symporter
775	 55.56	+1	842268..842366	-	32	15640804	-	VC0785	-	hypothetical protein
776	 51.18	0	842367..843632	-	421	15640805	-	VC0786	-	D-amino acid dehydrogenase small subunit
777	 51.02	0	843733..844665	+	310	15640806	-	VC0787	-	LysR family transcriptional regulator
778	 50.61	0	844790..845119	+	109	15640807	-	VC0788	-	DOPA-dioxygenase-related protein
779	 43.96	0	845285..845557	+	90	15640808	-	VC0789	-	hypothetical protein
780	 47.95	0	845591..846274	-	227	15640809	-	VC0790	-	transcriptional regulator CitB
781	 49.76	0	846288..847985	-	565	15640810	-	VC0791	-	sensor kinase citA
782	 52.53	+1	848056..849357	-	433	15640811	-	VC0792	-	oxaloacetate decarboxylase, beta subunit
783	 52.42	+1	849373..851171	-	599	15642772	oadA-2	VC0793m	-	pyruvate carboxylase subunit B
784	 48.57	0	851190..851609	-	139	15640812	-	VC0794	-	hypothetical protein
785	 49.29	0	851557..852903	-	448	15640813	-	VC0795	-	citrate/sodium symporter
786	 45.28	0	853165..854235	+	356	15640814	-	VC0796	-	citrate (pro-3S)-lyase ligase
787	 53.87	+1	854287..854583	+	98	15640815	-	VC0797	-	citrate lyase subunit gamma
788	 54.77	+1	854565..855455	+	296	15640816	-	VC0798	-	citrate lyase, beta subunit
789	 52.59	+1	855391..856995	+	534	15640817	-	VC0799	-	citrate lyase, alpha subunit
790	 53.82	+1	856992..857528	+	178	15640818	-	VC0800	-	citX protein
791	 51.91	+1	857506..858447	+	313	15640819	-	VC0801	-	citG protein
792	 49.12	0	858794..859192	+	132	15640820	-	VC0802	-	hypothetical protein
793	 52.33	+1	859267..860040	+	257	15640821	-	VC0803	-	RNA methyltransferase
794	 51.23	0	860219..860542	-	107	15640822	-	VC0804	-	ferredoxin
795	 51.04	0	860584..860679	+	31	15640823	-	VC0805	-	hypothetical protein
796	 52.38	+1	860789..862405	+	538	15640824	-	VC0806	-	hypothetical protein
797	 47.66	0	862473..863156	-	227	15640825	-	VC0807	-	hypothetical protein
798	 43.14	-1	863128..863280	-	50	15640826	-	VC0808	-	hypothetical protein
799	 48.64	0	863289..865058	+	589	15640827	-	VC0809	-	hypothetical protein
800	 34.50	-2	865250..865765	+	171	15640828	-	VC0810	-	hypothetical protein
801	 32.91	-2	866099..866803	-	234	15640829	-	VC0811	-	hypothetical protein
802	 43.64	0	866873..869812	-	979	15640830	-	VC0812	-	helicase-related protein
803	 44.21	0	869813..870391	-	192	15640831	-	VC0813	-	tellurite resistance protein-related protein
804	 44.58	0	870819..871298	-	159	15640832	-	VC0814	-	transcriptional regulator, putative
805	 42.30	-1	871283..872653	-	456	15640833	-	VC0815	-	hypothetical protein
806	 38.80	-2	872764..872946	-	60	15640834	-	VC0816	-	hypothetical protein
807	 45.02	0	873242..874225	+	327	15640835	-	VC0817	-	transposase, putative
808	 35.73	-2	875273..876898	-	541	15640836	-	VC0819	-	aldehyde dehydrogenase
809	 31.99	-2	876974..880015	+	1013	15640837	-	VC0820	-	ToxR-activated gene A protein
810	 28.51	-2	880128..881267	+	379	15640838	-	VC0821	-	hypothetical protein
811	 32.88	-2	881390..884728	+	1112	15640839	-	VC0822	-	inner membrane protein, putative
812	 35.78	-2	884725..885663	+	312	15640840	-	VC0823	-	hypothetical protein
813	 39.19	-1	885773..886267	+	164	15640841	-	VC0824	-	tagD protein
814	 38.11	-2	886543..888405	-	620	15640842	-	VC0825	-	toxin co-regulated pilus biosynthesis protein I
815	 36.64	-2	888846..889511	+	221	15640843	-	VC0826	-	toxin co-regulated pilus biosynthesis protein P
816	 41.61	-1	889496..889906	+	136	15640844	-	VC0827	-	toxin co-regulated pilus biosynthesis protein H
817	 43.26	0	890449..891123	+	224	15640845	-	VC0828	-	toxin co-regulated pilin
818	 40.60	-1	891203..892495	+	430	15640846	-	VC0829	-	toxin co-regulated pilus biosynthesis protein B
819	 35.76	-2	892495..892947	+	150	15640847	-	VC0830	-	toxin co-regulated pilus biosynthesis protein Q
820	 35.71	-2	892950..894419	+	489	15640848	-	VC0831	-	toxin co-regulated pilus biosynthesis outer membrane protein C
821	 28.07	-2	894412..894867	+	151	15640849	-	VC0832	-	toxin co-regulated pilus biosynthesis protein R
822	 30.35	-2	894855..895691	+	278	15640850	-	VC0833	-	toxin co-regulated pilus biosynthesis protein D
823	 31.15	-2	895707..896165	+	152	15640851	-	VC0834	-	toxin co-regulated pilus biosynthesis protein S
824	 36.18	-2	896155..897666	+	503	15640852	-	VC0835	-	toxin co-regulated pilus biosynthesis protein T
825	 35.58	-2	897641..898663	+	340	15640853	-	VC0836	-	toxin co-regulated pilus biosynthesis protein E
826	 34.91	-2	898673..899689	+	338	15640854	-	VC0837	-	toxin co-regulated pilus biosynthesis protein F
827	 28.28	-2	899896..900726	+	276	15640855	-	VC0838	-	TCP pilus virulence regulatory protein
828	 31.50	-2	900726..901487	+	253	15640856	-	VC0839	-	leader peptidase TcpJ
829	 34.29	-2	901494..903374	+	626	15640857	-	VC0840	-	accessory colonization factor AcfB
830	 36.32	-2	903380..904150	+	256	15640858	-	VC0841	-	accessory colonization factor AcfC
831	 30.17	-2	904166..904639	+	157	15640859	-	VC0842	-	hypothetical protein
832	 34.76	-2	904648..905556	+	302	15640860	-	VC0843	-	tagE protein
833	 31.33	-2	905559..906206	-	215	15640861	-	VC0844	-	accessory colonization factor AcfA
834	 38.51	-2	906379..910941	+	1520	15640862	-	VC0845	-	hypothetical protein
835	 46.34	0	912856..914124	-	422	15640863	-	VC0847	-	phage family integrase
836	 48.35	0	914726..915211	-	161	15640864	smpB	VC0848	-	SsrA-binding protein
837	 47.62	0	915389..915829	+	146	15640865	-	VC0849	-	hypothetical protein
838	 48.08	0	915826..916137	+	103	15640866	-	VC0850	-	hypothetical protein
839	 45.01	0	916215..916625	-	136	15640867	-	VC0851	-	small protein A
840	 48.17	0	916733..918397	-	554	15640868	-	VC0852	-	recombination and repair protein
841	 46.89	0	918527..919411	-	294	15640869	ppnK	VC0853	-	inorganic polyphosphate/ATP-NAD kinase
842	 49.42	0	919557..920159	+	200	15640870	-	VC0854	-	heat shock protein GrpE
843	 48.38	0	920423..922330	+	635	15640871	dnaK	VC0855	-	molecular chaperone DnaK
844	 51.66	0	922531..923676	+	381	15640872	-	VC0856	-	dnaJ protein
845	 43.92	0	923726..924169	-	147	15640873	-	VC0857	-	fimbrial assembly protein PilE, putative
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.