IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
706	 48.24	0	769308..769562	-	84	15640735	-	VC0716	-	ferredoxin
707	 49.54	0	769565..770965	-	466	15640736	-	VC0717	-	protease, putative
708	 49.51	0	771116..772030	-	304	15640737	rdgC	VC0718	-	recombination associated protein
709	 49.86	0	772267..772956	+	229	15640738	-	VC0719	-	DNA-binding response regulator PhoB
710	 51.31	0	772978..774279	+	433	15640739	phoR	VC0720	-	phosphate regulon sensor protein
711	 52.45	+1	774276..775253	+	325	15640740	-	VC0721	-	phosphate ABC transporter, periplasmic phosphate-binding protein, putative
712	 47.39	0	775321..776892	-	523	15640741	-	VC0722	-	exopolyphosphatase
713	 46.87	0	776804..778909	-	701	15640742	-	VC0723	-	polyphosphate kinase
714	 50.14	0	779108..781303	+	731	15640743	-	VC0724	-	phosphate ABC transporter, permease protein
715	 49.36	0	781313..782959	+	548	15640744	-	VC0725	-	phosphate ABC transporter, permease protein
716	 48.42	0	782962..783783	+	273	15640745	-	VC0726	-	phosphate ABC transporter, ATP-binding protein
717	 47.82	0	783817..784527	+	236	15640746	-	VC0727	-	transcriptional regulator PhoU
718	 50.06	0	784588..785364	-	258	15640747	-	VC0728	-	hypothetical protein
719	 49.02	0	785417..785518	+	33	15640748	-	VC0729	-	hypothetical protein
720	 50.85	0	785567..786331	-	254	15640749	-	VC0730	-	copper homeostasis protein
721	 46.15	0	786666..787289	-	207	15640750	-	VC0731	-	anti-oxidant AhpCTSA family protein
722	 47.57	0	787493..788398	+	301	15640751	-	VC0732	-	LysR family transcriptional regulator
723	 30.00	-2	788633..788752	-	39	15640752	-	VC0733	-	hypothetical protein
724	 49.67	0	788949..790619	+	556	15640753	-	VC0734	-	malate synthase
725	 46.08	0	790624..790725	-	33	15640754	-	VC0735	-	hypothetical protein
726	 51.52	0	790749..792062	+	437	15640755	-	VC0736	-	isocitrate lyase
727	 51.76	+1	792215..792724	-	169	15640756	-	VC0737	-	acetoin utilization protein AcuB, putative
728	 48.57	0	792788..792892	+	34	15640757	-	VC0738	-	hypothetical protein
729	 50.05	0	792954..794012	+	352	15640758	queA	VC0739	-	S-adenosylmethionine:tRNA ribosyltransferase-isomerase
730	 47.73	0	793967..794230	-	87	15640759	-	VC0740	-	hypothetical protein
731	 47.54	0	794241..795380	+	379	15640760	tgt	VC0741	-	queuine tRNA-ribosyltransferase
732	 45.65	0	795485..795817	+	110	15640761	yajC	VC0742	-	preprotein translocase subunit YajC
733	 49.95	0	795839..797692	+	617	15640762	secD	VC0743	-	preprotein translocase subunit SecD
734	 49.26	0	797707..798654	+	315	15640763	secF	VC0744	-	preprotein translocase subunit SecF
735	 47.87	0	798822..799688	-	288	15640764	-	VC0745	-	inositol monophosphate family protein
736	 50.88	0	799804..800538	+	244	15640765	-	VC0746	-	RNA methyltransferase
737	 48.85	0	800608..801174	+	188	15640766	-	VC0747	-	hypothetical protein
738	 49.30	0	801201..802415	+	404	15640767	-	VC0748	-	cysteine desulfurase
739	 47.14	0	802452..802835	+	127	15640768	-	VC0749	-	scaffold protein
740	 43.21	0	802896..803219	+	107	15640769	-	VC0750	-	hesB family protein
741	 48.26	0	803268..803783	+	171	15640770	hscB	VC0751	-	co-chaperone HscB
742	 52.57	+1	803807..805657	+	616	15640771	hscA	VC0752	-	chaperone protein HscA
743	 48.81	0	805590..806009	+	139	15640772	-	VC0753	-	ferredoxin
744	 43.08	-1	806058..806252	+	64	15640773	-	VC0754	-	hypothetical protein
745	 50.70	0	806472..807761	+	429	161582019	-	VC0755	-	aminopeptidase B
746	 48.25	0	807964..808392	+	142	15640775	ndk	VC0756	-	nucleoside diphosphate kinase
747	 47.86	0	808566..809687	+	373	15640776	-	VC0757	-	hypothetical protein
748	 48.90	0	809902..811083	+	393	15640777	-	VC0758	-	hypothetical protein
749	 50.04	0	811088..812218	+	376	15640778	ispG	VC0759	-	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
750	 49.65	0	812244..813512	+	422	15640779	hisS	VC0760	-	histidyl-tRNA synthetase
751	 49.11	0	813549..814163	+	204	15640780	-	VC0761	-	hypothetical protein
752	 51.59	0	814176..815336	+	386	15640781	-	VC0762	-	outer membrane protein assembly complex subunit YfgL
753	 49.23	0	815529..817013	+	494	15640782	engA	VC0763	-	GTP-binding protein EngA
754	 46.30	0	817034..817951	+	305	15640783	-	VC0764	-	hypothetical protein
755	 44.44	0	818256..818489	+	77	15640784	-	VC0765	-	hypothetical protein
756	 49.59	0	818470..819810	-	446	15640785	xseA	VC0766	-	exodeoxyribonuclease VII large subunit
757	 49.80	0	820012..821481	+	489	15640786	-	VC0767	-	inositol-5-monophosphate dehydrogenase
758	 48.78	0	821588..823141	+	517	15640787	guaA	VC0768	-	bifunctional GMP synthase/glutamine amidotransferase protein
759	 49.80	0	823377..825101	+	574	15640788	-	VC0769	-	chitinase, putative
760	 49.16	0	825292..825885	+	197	15640789	-	VC0770	-	hypothetical protein
761	 48.41	0	826197..827078	+	293	15640790	-	VC0771	-	vibriobactin-specific isochorismatase
762	 50.67	0	827179..828810	-	543	15640791	-	VC0772	-	vibriobactin-specific 2,3-dihydroxybenzoate-AMP ligase
763	 51.85	+1	828821..830008	-	395	15640792	-	VC0773	-	vibriobactin-specific isochorismate synthase
764	 50.44	0	830176..830964	+	262	15640793	-	VC0774	-	2,3-dihydroxybenzoate-2,3-dehydrogenase
765	 50.80	0	830976..832292	-	438	15640794	-	VC0775	-	vibriobactin synthesis protein, putative
766	 49.59	0	832470..833447	+	325	15640795	-	VC0776	-	iron-enterobactin transporter periplasmic binding protein
767	 52.80	+1	833444..834496	+	350	15640796	-	VC0777	-	ferric vibriobactin ABC transporter, permease protein
768	 52.27	+1	834475..835551	+	358	15640797	-	VC0778	-	ferric vibriobactin ABC transporter, permease protein
769	 50.95	0	835668..836507	+	279	15640798	-	VC0779	-	ferric vibriobactin ABC transporter, ATP-binding protein
770	 49.75	0	836438..837223	+	261	15640799	-	VC0780	-	vibriobactin synthase component D
771	 47.03	0	837233..838159	+	308	15640800	-	VC0781	-	LysR family transcriptional regulator
772	 47.75	0	838152..838262	-	36	15640801	-	VC0782	-	hypothetical protein
773	 48.56	0	838377..840359	+	660	15640802	-	VC0783	-	hypothetical protein
774	 50.42	0	840439..841989	-	516	15640803	-	VC0784	-	sodium/alanine symporter
775	 55.56	+1	842268..842366	-	32	15640804	-	VC0785	-	hypothetical protein
776	 51.18	0	842367..843632	-	421	15640805	-	VC0786	-	D-amino acid dehydrogenase small subunit
777	 51.02	0	843733..844665	+	310	15640806	-	VC0787	-	LysR family transcriptional regulator
778	 50.61	0	844790..845119	+	109	15640807	-	VC0788	-	DOPA-dioxygenase-related protein
779	 43.96	0	845285..845557	+	90	15640808	-	VC0789	-	hypothetical protein
780	 47.95	0	845591..846274	-	227	15640809	-	VC0790	-	transcriptional regulator CitB
781	 49.76	0	846288..847985	-	565	15640810	-	VC0791	-	sensor kinase citA
782	 52.53	+1	848056..849357	-	433	15640811	-	VC0792	-	oxaloacetate decarboxylase, beta subunit
783	 52.42	+1	849373..851171	-	599	15642772	oadA-2	VC0793m	-	pyruvate carboxylase subunit B
784	 48.57	0	851190..851609	-	139	15640812	-	VC0794	-	hypothetical protein
785	 49.29	0	851557..852903	-	448	15640813	-	VC0795	-	citrate/sodium symporter
786	 45.28	0	853165..854235	+	356	15640814	-	VC0796	-	citrate (pro-3S)-lyase ligase
787	 53.87	+1	854287..854583	+	98	15640815	-	VC0797	-	citrate lyase subunit gamma
788	 54.77	+1	854565..855455	+	296	15640816	-	VC0798	-	citrate lyase, beta subunit
789	 52.59	+1	855391..856995	+	534	15640817	-	VC0799	-	citrate lyase, alpha subunit
790	 53.82	+1	856992..857528	+	178	15640818	-	VC0800	-	citX protein
791	 51.91	+1	857506..858447	+	313	15640819	-	VC0801	-	citG protein
792	 49.12	0	858794..859192	+	132	15640820	-	VC0802	-	hypothetical protein
793	 52.33	+1	859267..860040	+	257	15640821	-	VC0803	-	RNA methyltransferase
794	 51.23	0	860219..860542	-	107	15640822	-	VC0804	-	ferredoxin
795	 51.04	0	860584..860679	+	31	15640823	-	VC0805	-	hypothetical protein
796	 52.38	+1	860789..862405	+	538	15640824	-	VC0806	-	hypothetical protein
797	 47.66	0	862473..863156	-	227	15640825	-	VC0807	-	hypothetical protein
798	 43.14	-1	863128..863280	-	50	15640826	-	VC0808	-	hypothetical protein
799	 48.64	0	863289..865058	+	589	15640827	-	VC0809	-	hypothetical protein
800	 34.50	-2	865250..865765	+	171	15640828	-	VC0810	-	hypothetical protein
801	 32.91	-2	866099..866803	-	234	15640829	-	VC0811	-	hypothetical protein
802	 43.64	0	866873..869812	-	979	15640830	-	VC0812	-	helicase-related protein
803	 44.21	0	869813..870391	-	192	15640831	-	VC0813	-	tellurite resistance protein-related protein
804	 44.58	0	870819..871298	-	159	15640832	-	VC0814	-	transcriptional regulator, putative
805	 42.30	-1	871283..872653	-	456	15640833	-	VC0815	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.