version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 638 49.89 0 692490..693401 + 303 15640668 - VC0648 - lipoprotein NlpI 639 45.00 0 693488..693907 + 139 15640669 - VC0649 - MarR family transcriptional regulator 640 50.60 0 693954..695291 + 445 15640670 vmrA VC0650 - multidrug efflux pump VmrA 641 48.45 0 695344..696309 - 321 15640671 - VC0651 - hypothetical protein 642 50.10 0 696234..697247 - 337 15640672 - VC0652 - protease, putative 643 47.49 0 697355..699409 - 684 15640673 - VC0653 - c-di-GMP phosphodiesterase A-related protein 644 44.13 0 699642..700169 + 175 15640674 - VC0654 - hypothetical protein 645 50.36 0 700105..700656 + 183 15640675 - VC0655 - acetyltransferase, putative 646 50.49 0 700767..701174 + 135 15640676 - VC0656 - DNA polymerase III subunit psi 647 47.33 0 701135..701620 + 161 15640677 - VC0657 - ribosomal-protein-alanine acetyltransferase 648 47.23 0 701609..703666 - 685 15640678 - VC0658 - c-di-GMP phosphodiesterase A-related protein 649 50.19 0 703870..705465 + 531 15640679 prfC VC0659 - peptide chain release factor 3 650 51.65 0 705587..706858 - 423 15640680 - VC0660 - ATP-dependent RNA helicase SrmB 651 48.82 0 706946..707668 - 240 15640681 - VC0661 - hypothetical protein 652 49.70 0 707977..709290 + 437 15640682 - VC0662 - branched chain amino acid transport system II carrier protein 653 48.59 0 709460..710558 + 365 15642771 prfB VC0663 - peptide chain release factor 2 654 49.71 0 710583..712121 + 512 15640683 lysS VC0664 - lysyl-tRNA synthetase 655 48.69 0 712395..713729 + 444 15640684 - VC0665 - sigma-54 dependent transcriptional regulator 656 47.94 0 714244..714558 + 104 15640685 - VC0666 - hypothetical protein 657 47.31 0 714596..715654 - 352 15640686 - VC0667 - aldo/keto reductase family oxidoreductase TAS 658 53.45 +1 715847..716512 - 221 15640687 - VC0668 - DNA mismatch repair protein 659 38.71 -2 716899..716991 - 30 15640688 - VC0669 - hypothetical protein 660 35.37 -2 716974..717120 + 48 15640689 - VC0670 - hypothetical protein 661 46.56 0 717080..717661 + 193 15640690 - VC0671 - dinucleoside polyphosphate hydrolase 662 48.73 0 717664..719910 + 748 15640691 - VC0672 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 663 47.04 0 719920..720714 + 264 15640692 - VC0673 - hypothetical protein 664 48.90 0 720743..721558 + 271 15640693 - VC0674 - prolipoprotein diacylglyceryl transferase 665 46.13 0 721568..722419 + 283 15640694 thyA VC0675 - thymidylate synthase 666 47.87 0 722512..723660 - 382 15640695 - VC0676 - nptA protein 667 43.77 0 724055..724945 + 296 15640696 nhaR VC0677 - transcriptional activator NhaR 668 44.34 0 725144..725470 + 108 15640697 - VC0678 - transcriptional activator HlyU 669 47.51 0 725539..725799 - 86 15640698 rpsT VC0679 - 30S ribosomal protein S20 670 48.23 0 726042..727619 + 525 15640699 - VC0680 - MviN protein 671 50.67 0 727688..728656 + 322 15640700 - VC0681 - bifunctional riboflavin kinase/FMN adenylyltransferase 672 50.32 0 728687..731536 + 949 15640701 ileS VC0682 - isoleucyl-tRNA synthetase 673 49.22 0 731552..732067 + 171 15640702 lspA VC0683 - lipoprotein signal peptidase 674 50.34 0 732230..732664 + 144 15640703 - VC0684 - peptidyl-prolyl cis-trans isomerase, FKBP-type 675 50.89 0 732711..733661 + 316 161582020 ispH VC0685 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 676 37.50 -2 733692..733787 + 31 15640705 - VC0686 - hypothetical protein 677 50.10 0 733798..735282 - 494 15640706 - VC0687 - carbon starvation protein A, putative 678 46.20 0 735535..735876 + 113 15640707 - VC0688 - hypothetical protein 679 50.89 0 735892..737691 + 599 15640708 - VC0689 - hypothetical protein 680 53.46 +1 737715..738638 - 307 15640709 - VC0690 - N-acetylmuramic acid-6-phosphate etherase 681 53.73 +1 738656..739768 - 370 15640710 anmK VC0691 - anhydro-N-acetylmuramic acid kinase 682 52.37 +1 739874..740866 + 330 15640711 - VC0692 - beta-hexosaminidase 683 48.46 0 740893..741606 - 237 15640712 - VC0693 - putative two-component response-regulatory protein YehT 684 49.25 0 741616..743292 - 558 15640713 - VC0694 - hypothetical protein 685 48.79 0 743534..744607 + 357 15640714 - VC0695 - phospho-2-dehydro-3-deoxyheptonate aldolase 686 49.91 0 744620..745747 + 375 15640715 tyrA VC0696 - bifunctional chorismate mutase/prephenate dehydrogenase 687 46.06 0 745814..746245 - 143 15640716 - VC0697 - hypothetical protein 688 50.66 0 746356..748023 - 555 15640717 - VC0698 - putative ABC transporter ATP-binding protein 689 29.17 -2 748208..748303 + 31 15640718 - VC0699 - hypothetical protein 690 47.30 0 748385..750331 + 648 15640719 - VC0700 - soluble lytic murein transglycosylase 691 50.42 0 750341..750697 + 118 15640720 - VC0701 - Trp operon repressor 692 47.28 0 750775..751326 - 183 15640721 - VC0702 - NTPase 693 45.24 0 751247..753622 - 791 15640722 - VC0703 - c-di-GMP phosphodiesterase A-related protein 694 46.76 0 753606..754685 - 359 15640723 - VC0704 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative 695 47.36 0 754828..756003 - 391 15640724 - VC0705 - chorismate mutase/prephenate dehydratase 696 43.12 -1 756243..756569 - 108 15640725 - VC0706 - sigma-54 modulation protein, putative 697 40.31 -1 756848..756976 + 42 15640726 - VC0707 - hypothetical protein 698 47.64 0 756971..757732 - 253 15640727 - VC0708 - hypothetical protein 699 50.36 0 757851..758825 + 324 15640728 rluD VC0709 - 23S rRNA pseudouridine synthase D 700 50.90 0 758828..759550 + 240 15640729 - VC0710 - hypothetical protein 701 49.61 0 759675..762248 + 857 15640730 - VC0711 - clpB protein 702 37.63 -2 762497..762589 + 30 15640731 - VC0712 - hypothetical protein 703 34.85 -2 762602..762799 + 65 15640732 - VC0713 - hypothetical protein 704 43.83 0 768218..768541 + 107 15640733 - VC0714 - hypothetical protein 705 45.50 0 768551..769273 + 240 15640734 - VC0715 - nitroreductase A 706 48.24 0 769308..769562 - 84 15640735 - VC0716 - ferredoxin 707 49.54 0 769565..770965 - 466 15640736 - VC0717 - protease, putative 708 49.51 0 771116..772030 - 304 15640737 rdgC VC0718 - recombination associated protein 709 49.86 0 772267..772956 + 229 15640738 - VC0719 - DNA-binding response regulator PhoB 710 51.31 0 772978..774279 + 433 15640739 phoR VC0720 - phosphate regulon sensor protein 711 52.45 +1 774276..775253 + 325 15640740 - VC0721 - phosphate ABC transporter, periplasmic phosphate-binding protein, putative 712 47.39 0 775321..776892 - 523 15640741 - VC0722 - exopolyphosphatase 713 46.87 0 776804..778909 - 701 15640742 - VC0723 - polyphosphate kinase 714 50.14 0 779108..781303 + 731 15640743 - VC0724 - phosphate ABC transporter, permease protein 715 49.36 0 781313..782959 + 548 15640744 - VC0725 - phosphate ABC transporter, permease protein 716 48.42 0 782962..783783 + 273 15640745 - VC0726 - phosphate ABC transporter, ATP-binding protein 717 47.82 0 783817..784527 + 236 15640746 - VC0727 - transcriptional regulator PhoU 718 50.06 0 784588..785364 - 258 15640747 - VC0728 - hypothetical protein 719 49.02 0 785417..785518 + 33 15640748 - VC0729 - hypothetical protein 720 50.85 0 785567..786331 - 254 15640749 - VC0730 - copper homeostasis protein 721 46.15 0 786666..787289 - 207 15640750 - VC0731 - anti-oxidant AhpCTSA family protein 722 47.57 0 787493..788398 + 301 15640751 - VC0732 - LysR family transcriptional regulator 723 30.00 -2 788633..788752 - 39 15640752 - VC0733 - hypothetical protein 724 49.67 0 788949..790619 + 556 15640753 - VC0734 - malate synthase 725 46.08 0 790624..790725 - 33 15640754 - VC0735 - hypothetical protein 726 51.52 0 790749..792062 + 437 15640755 - VC0736 - isocitrate lyase 727 51.76 +1 792215..792724 - 169 15640756 - VC0737 - acetoin utilization protein AcuB, putative 728 48.57 0 792788..792892 + 34 15640757 - VC0738 - hypothetical protein 729 50.05 0 792954..794012 + 352 15640758 queA VC0739 - S-adenosylmethionine:tRNA ribosyltransferase-isomerase 730 47.73 0 793967..794230 - 87 15640759 - VC0740 - hypothetical protein 731 47.54 0 794241..795380 + 379 15640760 tgt VC0741 - queuine tRNA-ribosyltransferase 732 45.65 0 795485..795817 + 110 15640761 yajC VC0742 - preprotein translocase subunit YajC 733 49.95 0 795839..797692 + 617 15640762 secD VC0743 - preprotein translocase subunit SecD 734 49.26 0 797707..798654 + 315 15640763 secF VC0744 - preprotein translocase subunit SecF 735 47.87 0 798822..799688 - 288 15640764 - VC0745 - inositol monophosphate family protein 736 50.88 0 799804..800538 + 244 15640765 - VC0746 - RNA methyltransferase 737 48.85 0 800608..801174 + 188 15640766 - VC0747 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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