IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
623	 45.96	0	674828..675880	-	350	15640653	-	VC0633	-	outer membrane protein OmpU
624	 44.65	0	676405..676881	+	158	15640654	greA	VC0634	-	transcription elongation factor GreA
625	 43.43	0	676958..677254	-	98	15640655	-	VC0635	-	hypothetical protein
626	 44.92	0	677374..678003	+	209	15640656	rrmJ	VC0636	-	23S rRNA methyltransferase J
627	 47.85	0	678104..680059	+	651	15640657	-	VC0637	-	cell division protein FtsH
628	 45.88	0	680126..680962	+	278	15640658	-	VC0638	-	dihydropteroate synthase
629	 47.80	0	680988..682328	+	446	15640659	-	VC0639	-	phosphoglucomutase/phosphomannomutase family protein MrsA
630	 45.24	0	682585..682920	+	111	15640660	secG	VC0640	-	preprotein translocase subunit SecG
631	 44.96	0	683351..683806	+	151	15640661	-	VC0641	-	hypothetical protein
632	 47.98	0	683825..685312	+	495	15640662	nusA	VC0642	-	transcription elongation factor NusA
633	 49.35	0	685337..688033	+	898	15640663	infB	VC0643	-	translation initiation factor IF-2
634	 48.87	0	688135..688533	+	132	161582021	rbfA	VC0644	-	ribosome-binding factor A
635	 51.86	+1	688533..689471	+	312	15640665	truB	VC0645	-	tRNA pseudouridine synthase B
636	 47.78	0	689613..689882	+	89	15640666	rpsO	VC0646	-	30S ribosomal protein S15
637	 49.77	0	690245..692374	+	709	15640667	-	VC0647	-	polynucleotide phosphorylase/polyadenylase
638	 49.89	0	692490..693401	+	303	15640668	-	VC0648	-	lipoprotein NlpI
639	 45.00	0	693488..693907	+	139	15640669	-	VC0649	-	MarR family transcriptional regulator
640	 50.60	0	693954..695291	+	445	15640670	vmrA	VC0650	-	multidrug efflux pump VmrA
641	 48.45	0	695344..696309	-	321	15640671	-	VC0651	-	hypothetical protein
642	 50.10	0	696234..697247	-	337	15640672	-	VC0652	-	protease, putative
643	 47.49	0	697355..699409	-	684	15640673	-	VC0653	-	c-di-GMP phosphodiesterase A-related protein
644	 44.13	0	699642..700169	+	175	15640674	-	VC0654	-	hypothetical protein
645	 50.36	0	700105..700656	+	183	15640675	-	VC0655	-	acetyltransferase, putative
646	 50.49	0	700767..701174	+	135	15640676	-	VC0656	-	DNA polymerase III subunit psi
647	 47.33	0	701135..701620	+	161	15640677	-	VC0657	-	ribosomal-protein-alanine acetyltransferase
648	 47.23	0	701609..703666	-	685	15640678	-	VC0658	-	c-di-GMP phosphodiesterase A-related protein
649	 50.19	0	703870..705465	+	531	15640679	prfC	VC0659	-	peptide chain release factor 3
650	 51.65	0	705587..706858	-	423	15640680	-	VC0660	-	ATP-dependent RNA helicase SrmB
651	 48.82	0	706946..707668	-	240	15640681	-	VC0661	-	hypothetical protein
652	 49.70	0	707977..709290	+	437	15640682	-	VC0662	-	branched chain amino acid transport system II carrier protein
653	 48.59	0	709460..710558	+	365	15642771	prfB	VC0663	-	peptide chain release factor 2
654	 49.71	0	710583..712121	+	512	15640683	lysS	VC0664	-	lysyl-tRNA synthetase
655	 48.69	0	712395..713729	+	444	15640684	-	VC0665	-	sigma-54 dependent transcriptional regulator
656	 47.94	0	714244..714558	+	104	15640685	-	VC0666	-	hypothetical protein
657	 47.31	0	714596..715654	-	352	15640686	-	VC0667	-	aldo/keto reductase family oxidoreductase TAS
658	 53.45	+1	715847..716512	-	221	15640687	-	VC0668	-	DNA mismatch repair protein
659	 38.71	-2	716899..716991	-	30	15640688	-	VC0669	-	hypothetical protein
660	 35.37	-2	716974..717120	+	48	15640689	-	VC0670	-	hypothetical protein
661	 46.56	0	717080..717661	+	193	15640690	-	VC0671	-	dinucleoside polyphosphate hydrolase
662	 48.73	0	717664..719910	+	748	15640691	-	VC0672	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein
663	 47.04	0	719920..720714	+	264	15640692	-	VC0673	-	hypothetical protein
664	 48.90	0	720743..721558	+	271	15640693	-	VC0674	-	prolipoprotein diacylglyceryl transferase
665	 46.13	0	721568..722419	+	283	15640694	thyA	VC0675	-	thymidylate synthase
666	 47.87	0	722512..723660	-	382	15640695	-	VC0676	-	nptA protein
667	 43.77	0	724055..724945	+	296	15640696	nhaR	VC0677	-	transcriptional activator NhaR
668	 44.34	0	725144..725470	+	108	15640697	-	VC0678	-	transcriptional activator HlyU
669	 47.51	0	725539..725799	-	86	15640698	rpsT	VC0679	-	30S ribosomal protein S20
670	 48.23	0	726042..727619	+	525	15640699	-	VC0680	-	MviN protein
671	 50.67	0	727688..728656	+	322	15640700	-	VC0681	-	bifunctional riboflavin kinase/FMN adenylyltransferase
672	 50.32	0	728687..731536	+	949	15640701	ileS	VC0682	-	isoleucyl-tRNA synthetase
673	 49.22	0	731552..732067	+	171	15640702	lspA	VC0683	-	lipoprotein signal peptidase
674	 50.34	0	732230..732664	+	144	15640703	-	VC0684	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
675	 50.89	0	732711..733661	+	316	161582020	ispH	VC0685	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
676	 37.50	-2	733692..733787	+	31	15640705	-	VC0686	-	hypothetical protein
677	 50.10	0	733798..735282	-	494	15640706	-	VC0687	-	carbon starvation protein A, putative
678	 46.20	0	735535..735876	+	113	15640707	-	VC0688	-	hypothetical protein
679	 50.89	0	735892..737691	+	599	15640708	-	VC0689	-	hypothetical protein
680	 53.46	+1	737715..738638	-	307	15640709	-	VC0690	-	N-acetylmuramic acid-6-phosphate etherase
681	 53.73	+1	738656..739768	-	370	15640710	anmK	VC0691	-	anhydro-N-acetylmuramic acid kinase
682	 52.37	+1	739874..740866	+	330	15640711	-	VC0692	-	beta-hexosaminidase
683	 48.46	0	740893..741606	-	237	15640712	-	VC0693	-	putative two-component response-regulatory protein YehT
684	 49.25	0	741616..743292	-	558	15640713	-	VC0694	-	hypothetical protein
685	 48.79	0	743534..744607	+	357	15640714	-	VC0695	-	phospho-2-dehydro-3-deoxyheptonate aldolase
686	 49.91	0	744620..745747	+	375	15640715	tyrA	VC0696	-	bifunctional chorismate mutase/prephenate dehydrogenase
687	 46.06	0	745814..746245	-	143	15640716	-	VC0697	-	hypothetical protein
688	 50.66	0	746356..748023	-	555	15640717	-	VC0698	-	putative ABC transporter ATP-binding protein
689	 29.17	-2	748208..748303	+	31	15640718	-	VC0699	-	hypothetical protein
690	 47.30	0	748385..750331	+	648	15640719	-	VC0700	-	soluble lytic murein transglycosylase
691	 50.42	0	750341..750697	+	118	15640720	-	VC0701	-	Trp operon repressor
692	 47.28	0	750775..751326	-	183	15640721	-	VC0702	-	NTPase
693	 45.24	0	751247..753622	-	791	15640722	-	VC0703	-	c-di-GMP phosphodiesterase A-related protein
694	 46.76	0	753606..754685	-	359	15640723	-	VC0704	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative
695	 47.36	0	754828..756003	-	391	15640724	-	VC0705	-	chorismate mutase/prephenate dehydratase
696	 43.12	-1	756243..756569	-	108	15640725	-	VC0706	-	sigma-54 modulation protein, putative
697	 40.31	-1	756848..756976	+	42	15640726	-	VC0707	-	hypothetical protein
698	 47.64	0	756971..757732	-	253	15640727	-	VC0708	-	hypothetical protein
699	 50.36	0	757851..758825	+	324	15640728	rluD	VC0709	-	23S rRNA pseudouridine synthase D
700	 50.90	0	758828..759550	+	240	15640729	-	VC0710	-	hypothetical protein
701	 49.61	0	759675..762248	+	857	15640730	-	VC0711	-	clpB protein
702	 37.63	-2	762497..762589	+	30	15640731	-	VC0712	-	hypothetical protein
703	 34.85	-2	762602..762799	+	65	15640732	-	VC0713	-	hypothetical protein
704	 43.83	0	768218..768541	+	107	15640733	-	VC0714	-	hypothetical protein
705	 45.50	0	768551..769273	+	240	15640734	-	VC0715	-	nitroreductase A
706	 48.24	0	769308..769562	-	84	15640735	-	VC0716	-	ferredoxin
707	 49.54	0	769565..770965	-	466	15640736	-	VC0717	-	protease, putative
708	 49.51	0	771116..772030	-	304	15640737	rdgC	VC0718	-	recombination associated protein
709	 49.86	0	772267..772956	+	229	15640738	-	VC0719	-	DNA-binding response regulator PhoB
710	 51.31	0	772978..774279	+	433	15640739	phoR	VC0720	-	phosphate regulon sensor protein
711	 52.45	+1	774276..775253	+	325	15640740	-	VC0721	-	phosphate ABC transporter, periplasmic phosphate-binding protein, putative
712	 47.39	0	775321..776892	-	523	15640741	-	VC0722	-	exopolyphosphatase
713	 46.87	0	776804..778909	-	701	15640742	-	VC0723	-	polyphosphate kinase
714	 50.14	0	779108..781303	+	731	15640743	-	VC0724	-	phosphate ABC transporter, permease protein
715	 49.36	0	781313..782959	+	548	15640744	-	VC0725	-	phosphate ABC transporter, permease protein
716	 48.42	0	782962..783783	+	273	15640745	-	VC0726	-	phosphate ABC transporter, ATP-binding protein
717	 47.82	0	783817..784527	+	236	15640746	-	VC0727	-	transcriptional regulator PhoU
718	 50.06	0	784588..785364	-	258	15640747	-	VC0728	-	hypothetical protein
719	 49.02	0	785417..785518	+	33	15640748	-	VC0729	-	hypothetical protein
720	 50.85	0	785567..786331	-	254	15640749	-	VC0730	-	copper homeostasis protein
721	 46.15	0	786666..787289	-	207	15640750	-	VC0731	-	anti-oxidant AhpCTSA family protein
722	 47.57	0	787493..788398	+	301	15640751	-	VC0732	-	LysR family transcriptional regulator
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.