version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 603 50.21 0 646873..648786 - 637 15640633 - VC0613 - beta-N-acetylhexosaminidase 604 52.76 +1 648783..649760 - 325 15640634 - VC0614 - hypothetical protein 605 50.14 0 649664..651388 - 574 15640635 - VC0615 - endoglucanase-related protein 606 49.30 0 651445..652440 - 331 15640636 - VC0616 - peptide ABC transporter, ATP-binding protein 607 48.58 0 652483..653466 - 327 15640637 - VC0617 - peptide ABC transporter, ATP-binding protein 608 51.27 0 653469..654494 - 341 15640638 - VC0618 - peptide ABC transporter, permease protein 609 48.33 0 654497..655483 - 328 15640639 - VC0619 - peptide ABC transporter, permease protein 610 47.82 0 655653..657323 - 556 15640640 - VC0620 - peptide ABC transporter, periplasmic peptide-binding protein 611 44.87 0 657896..658285 + 129 15640641 - VC0621 - hypothetical protein 612 47.71 0 658234..661767 - 1177 15640642 - VC0622 - sensory box sensor histidine kinase/response regulator 613 47.90 0 661831..662853 - 340 15640643 - VC0623 - hypothetical protein 614 46.78 0 662926..664011 - 361 15640644 - VC0624 - hypothetical protein 615 45.51 0 664048..664203 + 51 15640645 - VC0625 - hypothetical protein 616 50.42 0 664265..665563 - 432 15640646 - VC0626 - glutamate-1-semialdehyde aminotransferase 617 45.32 0 665847..666188 + 113 15640647 - VC0627 - iron-sulfur cluster insertion protein ErpA 618 49.14 0 666286..667386 + 366 15640648 - VC0628 - hypothetical protein 619 49.04 0 667295..670516 + 1073 15640649 - VC0629 - multidrug resistance protein, putative 620 45.62 0 670598..671899 - 433 15640650 - VC0630 - hypothetical protein 621 47.56 0 672030..673217 + 395 15640651 - VC0631 - tyrosyl-tRNA synthetase 622 47.68 0 673285..674748 - 487 15640652 - VC0632 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 623 45.96 0 674828..675880 - 350 15640653 - VC0633 - outer membrane protein OmpU 624 44.65 0 676405..676881 + 158 15640654 greA VC0634 - transcription elongation factor GreA 625 43.43 0 676958..677254 - 98 15640655 - VC0635 - hypothetical protein 626 44.92 0 677374..678003 + 209 15640656 rrmJ VC0636 - 23S rRNA methyltransferase J 627 47.85 0 678104..680059 + 651 15640657 - VC0637 - cell division protein FtsH 628 45.88 0 680126..680962 + 278 15640658 - VC0638 - dihydropteroate synthase 629 47.80 0 680988..682328 + 446 15640659 - VC0639 - phosphoglucomutase/phosphomannomutase family protein MrsA 630 45.24 0 682585..682920 + 111 15640660 secG VC0640 - preprotein translocase subunit SecG 631 44.96 0 683351..683806 + 151 15640661 - VC0641 - hypothetical protein 632 47.98 0 683825..685312 + 495 15640662 nusA VC0642 - transcription elongation factor NusA 633 49.35 0 685337..688033 + 898 15640663 infB VC0643 - translation initiation factor IF-2 634 48.87 0 688135..688533 + 132 161582021 rbfA VC0644 - ribosome-binding factor A 635 51.86 +1 688533..689471 + 312 15640665 truB VC0645 - tRNA pseudouridine synthase B 636 47.78 0 689613..689882 + 89 15640666 rpsO VC0646 - 30S ribosomal protein S15 637 49.77 0 690245..692374 + 709 15640667 - VC0647 - polynucleotide phosphorylase/polyadenylase 638 49.89 0 692490..693401 + 303 15640668 - VC0648 - lipoprotein NlpI 639 45.00 0 693488..693907 + 139 15640669 - VC0649 - MarR family transcriptional regulator 640 50.60 0 693954..695291 + 445 15640670 vmrA VC0650 - multidrug efflux pump VmrA 641 48.45 0 695344..696309 - 321 15640671 - VC0651 - hypothetical protein 642 50.10 0 696234..697247 - 337 15640672 - VC0652 - protease, putative 643 47.49 0 697355..699409 - 684 15640673 - VC0653 - c-di-GMP phosphodiesterase A-related protein 644 44.13 0 699642..700169 + 175 15640674 - VC0654 - hypothetical protein 645 50.36 0 700105..700656 + 183 15640675 - VC0655 - acetyltransferase, putative 646 50.49 0 700767..701174 + 135 15640676 - VC0656 - DNA polymerase III subunit psi 647 47.33 0 701135..701620 + 161 15640677 - VC0657 - ribosomal-protein-alanine acetyltransferase 648 47.23 0 701609..703666 - 685 15640678 - VC0658 - c-di-GMP phosphodiesterase A-related protein 649 50.19 0 703870..705465 + 531 15640679 prfC VC0659 - peptide chain release factor 3 650 51.65 0 705587..706858 - 423 15640680 - VC0660 - ATP-dependent RNA helicase SrmB 651 48.82 0 706946..707668 - 240 15640681 - VC0661 - hypothetical protein 652 49.70 0 707977..709290 + 437 15640682 - VC0662 - branched chain amino acid transport system II carrier protein 653 48.59 0 709460..710558 + 365 15642771 prfB VC0663 - peptide chain release factor 2 654 49.71 0 710583..712121 + 512 15640683 lysS VC0664 - lysyl-tRNA synthetase 655 48.69 0 712395..713729 + 444 15640684 - VC0665 - sigma-54 dependent transcriptional regulator 656 47.94 0 714244..714558 + 104 15640685 - VC0666 - hypothetical protein 657 47.31 0 714596..715654 - 352 15640686 - VC0667 - aldo/keto reductase family oxidoreductase TAS 658 53.45 +1 715847..716512 - 221 15640687 - VC0668 - DNA mismatch repair protein 659 38.71 -2 716899..716991 - 30 15640688 - VC0669 - hypothetical protein 660 35.37 -2 716974..717120 + 48 15640689 - VC0670 - hypothetical protein 661 46.56 0 717080..717661 + 193 15640690 - VC0671 - dinucleoside polyphosphate hydrolase 662 48.73 0 717664..719910 + 748 15640691 - VC0672 - fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein 663 47.04 0 719920..720714 + 264 15640692 - VC0673 - hypothetical protein 664 48.90 0 720743..721558 + 271 15640693 - VC0674 - prolipoprotein diacylglyceryl transferase 665 46.13 0 721568..722419 + 283 15640694 thyA VC0675 - thymidylate synthase 666 47.87 0 722512..723660 - 382 15640695 - VC0676 - nptA protein 667 43.77 0 724055..724945 + 296 15640696 nhaR VC0677 - transcriptional activator NhaR 668 44.34 0 725144..725470 + 108 15640697 - VC0678 - transcriptional activator HlyU 669 47.51 0 725539..725799 - 86 15640698 rpsT VC0679 - 30S ribosomal protein S20 670 48.23 0 726042..727619 + 525 15640699 - VC0680 - MviN protein 671 50.67 0 727688..728656 + 322 15640700 - VC0681 - bifunctional riboflavin kinase/FMN adenylyltransferase 672 50.32 0 728687..731536 + 949 15640701 ileS VC0682 - isoleucyl-tRNA synthetase 673 49.22 0 731552..732067 + 171 15640702 lspA VC0683 - lipoprotein signal peptidase 674 50.34 0 732230..732664 + 144 15640703 - VC0684 - peptidyl-prolyl cis-trans isomerase, FKBP-type 675 50.89 0 732711..733661 + 316 161582020 ispH VC0685 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase 676 37.50 -2 733692..733787 + 31 15640705 - VC0686 - hypothetical protein 677 50.10 0 733798..735282 - 494 15640706 - VC0687 - carbon starvation protein A, putative 678 46.20 0 735535..735876 + 113 15640707 - VC0688 - hypothetical protein 679 50.89 0 735892..737691 + 599 15640708 - VC0689 - hypothetical protein 680 53.46 +1 737715..738638 - 307 15640709 - VC0690 - N-acetylmuramic acid-6-phosphate etherase 681 53.73 +1 738656..739768 - 370 15640710 anmK VC0691 - anhydro-N-acetylmuramic acid kinase 682 52.37 +1 739874..740866 + 330 15640711 - VC0692 - beta-hexosaminidase 683 48.46 0 740893..741606 - 237 15640712 - VC0693 - putative two-component response-regulatory protein YehT 684 49.25 0 741616..743292 - 558 15640713 - VC0694 - hypothetical protein 685 48.79 0 743534..744607 + 357 15640714 - VC0695 - phospho-2-dehydro-3-deoxyheptonate aldolase 686 49.91 0 744620..745747 + 375 15640715 tyrA VC0696 - bifunctional chorismate mutase/prephenate dehydrogenase 687 46.06 0 745814..746245 - 143 15640716 - VC0697 - hypothetical protein 688 50.66 0 746356..748023 - 555 15640717 - VC0698 - putative ABC transporter ATP-binding protein 689 29.17 -2 748208..748303 + 31 15640718 - VC0699 - hypothetical protein 690 47.30 0 748385..750331 + 648 15640719 - VC0700 - soluble lytic murein transglycosylase 691 50.42 0 750341..750697 + 118 15640720 - VC0701 - Trp operon repressor 692 47.28 0 750775..751326 - 183 15640721 - VC0702 - NTPase 693 45.24 0 751247..753622 - 791 15640722 - VC0703 - c-di-GMP phosphodiesterase A-related protein 694 46.76 0 753606..754685 - 359 15640723 - VC0704 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein, putative 695 47.36 0 754828..756003 - 391 15640724 - VC0705 - chorismate mutase/prephenate dehydratase 696 43.12 -1 756243..756569 - 108 15640725 - VC0706 - sigma-54 modulation protein, putative 697 40.31 -1 756848..756976 + 42 15640726 - VC0707 - hypothetical protein 698 47.64 0 756971..757732 - 253 15640727 - VC0708 - hypothetical protein 699 50.36 0 757851..758825 + 324 15640728 rluD VC0709 - 23S rRNA pseudouridine synthase D 700 50.90 0 758828..759550 + 240 15640729 - VC0710 - hypothetical protein 701 49.61 0 759675..762248 + 857 15640730 - VC0711 - clpB protein 702 37.63 -2 762497..762589 + 30 15640731 - VC0712 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0