IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
578	 50.15	0	614896..616542	+	548	15640608	-	VC0587	-	sulfate permease family protein
579	 46.08	0	616650..616751	+	33	15640609	-	VC0588	-	hypothetical protein
580	 48.37	0	616926..617843	+	305	15640610	-	VC0589	-	ABC transporter, ATP-binding protein
581	 46.69	0	617849..618619	+	256	15640611	-	VC0590	-	permease, putative
582	 49.89	0	618683..619564	-	293	15640612	panC	VC0591	-	pantoate--beta-alanine ligase
583	 48.93	0	619575..620369	-	264	15640613	panB	VC0592	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
584	 51.98	+1	620372..620875	-	167	15640614	-	VC0593	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
585	 51.82	+1	620872..622245	-	457	15640615	-	VC0594	-	polyA polymerase
586	 50.49	0	622336..623250	-	304	15640616	-	VC0595	-	glutamyl-Q tRNA(Asp) synthetase
587	 47.65	0	623299..623745	-	148	15640617	-	VC0596	-	dnaK suppressor protein
588	 48.25	0	623870..624640	-	256	15640618	-	VC0597	-	sugar fermentation stimulation protein A
589	 45.10	0	624628..624729	+	33	15640619	-	VC0598	-	hypothetical protein
590	 42.11	-1	624766..624879	-	37	15640620	-	VC0599	-	hypothetical protein
591	 51.44	0	624851..626203	+	450	15640621	-	VC0600	-	hypothetical protein
592	 55.30	+1	626302..628764	+	820	15640622	-	VC0601	-	ATP-dependent RNA helicase HrpB
593	 51.54	0	628761..631094	+	777	15640623	-	VC0602	-	penicillin-binding protein 1B
594	 49.80	0	631331..633625	+	764	15640624	-	VC0603	-	hypothetical protein
595	 51.27	0	633890..636487	+	865	15640625	-	VC0604	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
596	 44.88	0	636642..637022	+	126	15640626	-	VC0605	-	hypothetical protein
597	 45.90	0	637173..637538	+	121	15640627	-	VC0606	-	nitrogen regulatory protein P-II
598	 45.70	0	638885..639943	+	352	15640628	-	VC0608	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
599	 49.14	0	640027..641652	+	541	15640629	-	VC0609	-	iron(III) ABC transporter, permease protein
600	 51.94	+1	641652..642683	+	343	15640630	-	VC0610	-	iron(III) ABC transporter, ATP-binding protein
601	 49.19	0	642814..644226	-	470	15640631	-	VC0611	-	phosphoglucomutase/phosphomannomutase, putative
602	 50.50	0	644349..646754	-	801	15640632	-	VC0612	-	cellobiose/cellodextrin-phosphorylase, putative
603	 50.21	0	646873..648786	-	637	15640633	-	VC0613	-	beta-N-acetylhexosaminidase
604	 52.76	+1	648783..649760	-	325	15640634	-	VC0614	-	hypothetical protein
605	 50.14	0	649664..651388	-	574	15640635	-	VC0615	-	endoglucanase-related protein
606	 49.30	0	651445..652440	-	331	15640636	-	VC0616	-	peptide ABC transporter, ATP-binding protein
607	 48.58	0	652483..653466	-	327	15640637	-	VC0617	-	peptide ABC transporter, ATP-binding protein
608	 51.27	0	653469..654494	-	341	15640638	-	VC0618	-	peptide ABC transporter, permease protein
609	 48.33	0	654497..655483	-	328	15640639	-	VC0619	-	peptide ABC transporter, permease protein
610	 47.82	0	655653..657323	-	556	15640640	-	VC0620	-	peptide ABC transporter, periplasmic peptide-binding protein
611	 44.87	0	657896..658285	+	129	15640641	-	VC0621	-	hypothetical protein
612	 47.71	0	658234..661767	-	1177	15640642	-	VC0622	-	sensory box sensor histidine kinase/response regulator
613	 47.90	0	661831..662853	-	340	15640643	-	VC0623	-	hypothetical protein
614	 46.78	0	662926..664011	-	361	15640644	-	VC0624	-	hypothetical protein
615	 45.51	0	664048..664203	+	51	15640645	-	VC0625	-	hypothetical protein
616	 50.42	0	664265..665563	-	432	15640646	-	VC0626	-	glutamate-1-semialdehyde aminotransferase
617	 45.32	0	665847..666188	+	113	15640647	-	VC0627	-	iron-sulfur cluster insertion protein ErpA
618	 49.14	0	666286..667386	+	366	15640648	-	VC0628	-	hypothetical protein
619	 49.04	0	667295..670516	+	1073	15640649	-	VC0629	-	multidrug resistance protein, putative
620	 45.62	0	670598..671899	-	433	15640650	-	VC0630	-	hypothetical protein
621	 47.56	0	672030..673217	+	395	15640651	-	VC0631	-	tyrosyl-tRNA synthetase
622	 47.68	0	673285..674748	-	487	15640652	-	VC0632	-	D-alanyl-D-alanine carboxypeptidase/endopeptidase
623	 45.96	0	674828..675880	-	350	15640653	-	VC0633	-	outer membrane protein OmpU
624	 44.65	0	676405..676881	+	158	15640654	greA	VC0634	-	transcription elongation factor GreA
625	 43.43	0	676958..677254	-	98	15640655	-	VC0635	-	hypothetical protein
626	 44.92	0	677374..678003	+	209	15640656	rrmJ	VC0636	-	23S rRNA methyltransferase J
627	 47.85	0	678104..680059	+	651	15640657	-	VC0637	-	cell division protein FtsH
628	 45.88	0	680126..680962	+	278	15640658	-	VC0638	-	dihydropteroate synthase
629	 47.80	0	680988..682328	+	446	15640659	-	VC0639	-	phosphoglucomutase/phosphomannomutase family protein MrsA
630	 45.24	0	682585..682920	+	111	15640660	secG	VC0640	-	preprotein translocase subunit SecG
631	 44.96	0	683351..683806	+	151	15640661	-	VC0641	-	hypothetical protein
632	 47.98	0	683825..685312	+	495	15640662	nusA	VC0642	-	transcription elongation factor NusA
633	 49.35	0	685337..688033	+	898	15640663	infB	VC0643	-	translation initiation factor IF-2
634	 48.87	0	688135..688533	+	132	161582021	rbfA	VC0644	-	ribosome-binding factor A
635	 51.86	+1	688533..689471	+	312	15640665	truB	VC0645	-	tRNA pseudouridine synthase B
636	 47.78	0	689613..689882	+	89	15640666	rpsO	VC0646	-	30S ribosomal protein S15
637	 49.77	0	690245..692374	+	709	15640667	-	VC0647	-	polynucleotide phosphorylase/polyadenylase
638	 49.89	0	692490..693401	+	303	15640668	-	VC0648	-	lipoprotein NlpI
639	 45.00	0	693488..693907	+	139	15640669	-	VC0649	-	MarR family transcriptional regulator
640	 50.60	0	693954..695291	+	445	15640670	vmrA	VC0650	-	multidrug efflux pump VmrA
641	 48.45	0	695344..696309	-	321	15640671	-	VC0651	-	hypothetical protein
642	 50.10	0	696234..697247	-	337	15640672	-	VC0652	-	protease, putative
643	 47.49	0	697355..699409	-	684	15640673	-	VC0653	-	c-di-GMP phosphodiesterase A-related protein
644	 44.13	0	699642..700169	+	175	15640674	-	VC0654	-	hypothetical protein
645	 50.36	0	700105..700656	+	183	15640675	-	VC0655	-	acetyltransferase, putative
646	 50.49	0	700767..701174	+	135	15640676	-	VC0656	-	DNA polymerase III subunit psi
647	 47.33	0	701135..701620	+	161	15640677	-	VC0657	-	ribosomal-protein-alanine acetyltransferase
648	 47.23	0	701609..703666	-	685	15640678	-	VC0658	-	c-di-GMP phosphodiesterase A-related protein
649	 50.19	0	703870..705465	+	531	15640679	prfC	VC0659	-	peptide chain release factor 3
650	 51.65	0	705587..706858	-	423	15640680	-	VC0660	-	ATP-dependent RNA helicase SrmB
651	 48.82	0	706946..707668	-	240	15640681	-	VC0661	-	hypothetical protein
652	 49.70	0	707977..709290	+	437	15640682	-	VC0662	-	branched chain amino acid transport system II carrier protein
653	 48.59	0	709460..710558	+	365	15642771	prfB	VC0663	-	peptide chain release factor 2
654	 49.71	0	710583..712121	+	512	15640683	lysS	VC0664	-	lysyl-tRNA synthetase
655	 48.69	0	712395..713729	+	444	15640684	-	VC0665	-	sigma-54 dependent transcriptional regulator
656	 47.94	0	714244..714558	+	104	15640685	-	VC0666	-	hypothetical protein
657	 47.31	0	714596..715654	-	352	15640686	-	VC0667	-	aldo/keto reductase family oxidoreductase TAS
658	 53.45	+1	715847..716512	-	221	15640687	-	VC0668	-	DNA mismatch repair protein
659	 38.71	-2	716899..716991	-	30	15640688	-	VC0669	-	hypothetical protein
660	 35.37	-2	716974..717120	+	48	15640689	-	VC0670	-	hypothetical protein
661	 46.56	0	717080..717661	+	193	15640690	-	VC0671	-	dinucleoside polyphosphate hydrolase
662	 48.73	0	717664..719910	+	748	15640691	-	VC0672	-	fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain-containing protein
663	 47.04	0	719920..720714	+	264	15640692	-	VC0673	-	hypothetical protein
664	 48.90	0	720743..721558	+	271	15640693	-	VC0674	-	prolipoprotein diacylglyceryl transferase
665	 46.13	0	721568..722419	+	283	15640694	thyA	VC0675	-	thymidylate synthase
666	 47.87	0	722512..723660	-	382	15640695	-	VC0676	-	nptA protein
667	 43.77	0	724055..724945	+	296	15640696	nhaR	VC0677	-	transcriptional activator NhaR
668	 44.34	0	725144..725470	+	108	15640697	-	VC0678	-	transcriptional activator HlyU
669	 47.51	0	725539..725799	-	86	15640698	rpsT	VC0679	-	30S ribosomal protein S20
670	 48.23	0	726042..727619	+	525	15640699	-	VC0680	-	MviN protein
671	 50.67	0	727688..728656	+	322	15640700	-	VC0681	-	bifunctional riboflavin kinase/FMN adenylyltransferase
672	 50.32	0	728687..731536	+	949	15640701	ileS	VC0682	-	isoleucyl-tRNA synthetase
673	 49.22	0	731552..732067	+	171	15640702	lspA	VC0683	-	lipoprotein signal peptidase
674	 50.34	0	732230..732664	+	144	15640703	-	VC0684	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
675	 50.89	0	732711..733661	+	316	161582020	ispH	VC0685	-	4-hydroxy-3-methylbut-2-enyl diphosphate reductase
676	 37.50	-2	733692..733787	+	31	15640705	-	VC0686	-	hypothetical protein
677	 50.10	0	733798..735282	-	494	15640706	-	VC0687	-	carbon starvation protein A, putative
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.