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Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 556 46.61 0 597929..598282 + 117 15640586 rplS VC0564 - 50S ribosomal protein L19 557 49.01 0 598403..599461 - 352 15640587 - VC0565 - protease DegS 558 47.92 0 599638..601008 - 456 15640588 - VC0566 - protease DO 559 46.58 0 601137..601574 - 145 15640589 - VC0567 - cytochrome d ubiquinol oxidase subunit III 560 44.93 0 601728..602831 + 367 15640590 - VC0568 - hypothetical protein 561 46.19 0 602761..602970 - 69 15640591 - VC0569 - hypothetical protein 562 45.69 0 603055..603483 + 142 15640592 rplM VC0570 - 50S ribosomal protein L13 563 48.60 0 603499..603891 + 130 15640593 rpsI VC0571 - 30S ribosomal protein S9 564 42.06 -1 603901..604026 + 41 15640594 - VC0572 - hypothetical protein 565 47.81 0 604219..604812 + 197 15640595 - VC0573 - ubiquinol--cytochrome c reductase, iron-sulfur subunit 566 44.23 0 604812..606077 + 421 15640596 - VC0574 - ubiquinol--cytochrome c reductase, cytochrome B 567 44.44 0 606074..606811 + 245 15640597 - VC0575 - ubiquinol--cytochrome c reductase, cytochrome c1 568 43.55 0 606911..607546 + 211 15640598 sspA VC0576 - stringent starvation protein A 569 46.96 0 607546..608022 + 158 15640599 - VC0577 - ClpXP protease specificity-enhancing factor 570 46.49 0 608090..608659 - 189 15640600 - VC0578 - hemolysin, putative 571 47.55 0 608662..609252 - 196 15640601 - VC0579 - phosphoheptose isomerase, putative 572 43.36 0 609256..609624 - 122 15640602 - VC0580 - hypothetical protein 573 47.09 0 609611..611572 - 653 15640603 - VC0581 - putative lipoprotein 574 45.56 0 611486..612352 + 288 15640604 - VC0582 - hypothetical protein 575 43.59 0 613391..613507 - 38 15640605 - VC0584 - hypothetical protein 576 44.01 0 613472..614005 + 177 15640606 - VC0585 - hypoxanthine-guanine phosphoribosyltransferase 577 46.79 0 614080..614748 - 222 15640607 - VC0586 - carbonic anhydrase, putative 578 50.15 0 614896..616542 + 548 15640608 - VC0587 - sulfate permease family protein 579 46.08 0 616650..616751 + 33 15640609 - VC0588 - hypothetical protein 580 48.37 0 616926..617843 + 305 15640610 - VC0589 - ABC transporter, ATP-binding protein 581 46.69 0 617849..618619 + 256 15640611 - VC0590 - permease, putative 582 49.89 0 618683..619564 - 293 15640612 panC VC0591 - pantoate--beta-alanine ligase 583 48.93 0 619575..620369 - 264 15640613 panB VC0592 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 584 51.98 +1 620372..620875 - 167 15640614 - VC0593 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 585 51.82 +1 620872..622245 - 457 15640615 - VC0594 - polyA polymerase 586 50.49 0 622336..623250 - 304 15640616 - VC0595 - glutamyl-Q tRNA(Asp) synthetase 587 47.65 0 623299..623745 - 148 15640617 - VC0596 - dnaK suppressor protein 588 48.25 0 623870..624640 - 256 15640618 - VC0597 - sugar fermentation stimulation protein A 589 45.10 0 624628..624729 + 33 15640619 - VC0598 - hypothetical protein 590 42.11 -1 624766..624879 - 37 15640620 - VC0599 - hypothetical protein 591 51.44 0 624851..626203 + 450 15640621 - VC0600 - hypothetical protein 592 55.30 +1 626302..628764 + 820 15640622 - VC0601 - ATP-dependent RNA helicase HrpB 593 51.54 0 628761..631094 + 777 15640623 - VC0602 - penicillin-binding protein 1B 594 49.80 0 631331..633625 + 764 15640624 - VC0603 - hypothetical protein 595 51.27 0 633890..636487 + 865 15640625 - VC0604 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 596 44.88 0 636642..637022 + 126 15640626 - VC0605 - hypothetical protein 597 45.90 0 637173..637538 + 121 15640627 - VC0606 - nitrogen regulatory protein P-II 598 45.70 0 638885..639943 + 352 15640628 - VC0608 - iron(III) ABC transporter, periplasmic iron-compound-binding protein 599 49.14 0 640027..641652 + 541 15640629 - VC0609 - iron(III) ABC transporter, permease protein 600 51.94 +1 641652..642683 + 343 15640630 - VC0610 - iron(III) ABC transporter, ATP-binding protein 601 49.19 0 642814..644226 - 470 15640631 - VC0611 - phosphoglucomutase/phosphomannomutase, putative 602 50.50 0 644349..646754 - 801 15640632 - VC0612 - cellobiose/cellodextrin-phosphorylase, putative 603 50.21 0 646873..648786 - 637 15640633 - VC0613 - beta-N-acetylhexosaminidase 604 52.76 +1 648783..649760 - 325 15640634 - VC0614 - hypothetical protein 605 50.14 0 649664..651388 - 574 15640635 - VC0615 - endoglucanase-related protein 606 49.30 0 651445..652440 - 331 15640636 - VC0616 - peptide ABC transporter, ATP-binding protein 607 48.58 0 652483..653466 - 327 15640637 - VC0617 - peptide ABC transporter, ATP-binding protein 608 51.27 0 653469..654494 - 341 15640638 - VC0618 - peptide ABC transporter, permease protein 609 48.33 0 654497..655483 - 328 15640639 - VC0619 - peptide ABC transporter, permease protein 610 47.82 0 655653..657323 - 556 15640640 - VC0620 - peptide ABC transporter, periplasmic peptide-binding protein 611 44.87 0 657896..658285 + 129 15640641 - VC0621 - hypothetical protein 612 47.71 0 658234..661767 - 1177 15640642 - VC0622 - sensory box sensor histidine kinase/response regulator 613 47.90 0 661831..662853 - 340 15640643 - VC0623 - hypothetical protein 614 46.78 0 662926..664011 - 361 15640644 - VC0624 - hypothetical protein 615 45.51 0 664048..664203 + 51 15640645 - VC0625 - hypothetical protein 616 50.42 0 664265..665563 - 432 15640646 - VC0626 - glutamate-1-semialdehyde aminotransferase 617 45.32 0 665847..666188 + 113 15640647 - VC0627 - iron-sulfur cluster insertion protein ErpA 618 49.14 0 666286..667386 + 366 15640648 - VC0628 - hypothetical protein 619 49.04 0 667295..670516 + 1073 15640649 - VC0629 - multidrug resistance protein, putative 620 45.62 0 670598..671899 - 433 15640650 - VC0630 - hypothetical protein 621 47.56 0 672030..673217 + 395 15640651 - VC0631 - tyrosyl-tRNA synthetase 622 47.68 0 673285..674748 - 487 15640652 - VC0632 - D-alanyl-D-alanine carboxypeptidase/endopeptidase 623 45.96 0 674828..675880 - 350 15640653 - VC0633 - outer membrane protein OmpU 624 44.65 0 676405..676881 + 158 15640654 greA VC0634 - transcription elongation factor GreA 625 43.43 0 676958..677254 - 98 15640655 - VC0635 - hypothetical protein 626 44.92 0 677374..678003 + 209 15640656 rrmJ VC0636 - 23S rRNA methyltransferase J 627 47.85 0 678104..680059 + 651 15640657 - VC0637 - cell division protein FtsH 628 45.88 0 680126..680962 + 278 15640658 - VC0638 - dihydropteroate synthase 629 47.80 0 680988..682328 + 446 15640659 - VC0639 - phosphoglucomutase/phosphomannomutase family protein MrsA 630 45.24 0 682585..682920 + 111 15640660 secG VC0640 - preprotein translocase subunit SecG 631 44.96 0 683351..683806 + 151 15640661 - VC0641 - hypothetical protein 632 47.98 0 683825..685312 + 495 15640662 nusA VC0642 - transcription elongation factor NusA 633 49.35 0 685337..688033 + 898 15640663 infB VC0643 - translation initiation factor IF-2 634 48.87 0 688135..688533 + 132 161582021 rbfA VC0644 - ribosome-binding factor A 635 51.86 +1 688533..689471 + 312 15640665 truB VC0645 - tRNA pseudouridine synthase B 636 47.78 0 689613..689882 + 89 15640666 rpsO VC0646 - 30S ribosomal protein S15 637 49.77 0 690245..692374 + 709 15640667 - VC0647 - polynucleotide phosphorylase/polyadenylase 638 49.89 0 692490..693401 + 303 15640668 - VC0648 - lipoprotein NlpI 639 45.00 0 693488..693907 + 139 15640669 - VC0649 - MarR family transcriptional regulator 640 50.60 0 693954..695291 + 445 15640670 vmrA VC0650 - multidrug efflux pump VmrA 641 48.45 0 695344..696309 - 321 15640671 - VC0651 - hypothetical protein 642 50.10 0 696234..697247 - 337 15640672 - VC0652 - protease, putative 643 47.49 0 697355..699409 - 684 15640673 - VC0653 - c-di-GMP phosphodiesterase A-related protein 644 44.13 0 699642..700169 + 175 15640674 - VC0654 - hypothetical protein 645 50.36 0 700105..700656 + 183 15640675 - VC0655 - acetyltransferase, putative 646 50.49 0 700767..701174 + 135 15640676 - VC0656 - DNA polymerase III subunit psi 647 47.33 0 701135..701620 + 161 15640677 - VC0657 - ribosomal-protein-alanine acetyltransferase 648 47.23 0 701609..703666 - 685 15640678 - VC0658 - c-di-GMP phosphodiesterase A-related protein 649 50.19 0 703870..705465 + 531 15640679 prfC VC0659 - peptide chain release factor 3 650 51.65 0 705587..706858 - 423 15640680 - VC0660 - ATP-dependent RNA helicase SrmB 651 48.82 0 706946..707668 - 240 15640681 - VC0661 - hypothetical protein 652 49.70 0 707977..709290 + 437 15640682 - VC0662 - branched chain amino acid transport system II carrier protein 653 48.59 0 709460..710558 + 365 15642771 prfB VC0663 - peptide chain release factor 2 654 49.71 0 710583..712121 + 512 15640683 lysS VC0664 - lysyl-tRNA synthetase 655 48.69 0 712395..713729 + 444 15640684 - VC0665 - sigma-54 dependent transcriptional regulator 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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