IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
508	 40.34	-1	548780..550021	-	413	15640540	-	VC0516	-	phage integrase
509	 47.39	0	550407..552284	-	625	15640541	-	VC0517	-	RNA polymerase sigma factor RpoD
510	 46.40	0	552383..554145	-	587	15642769	dnaG	VC0518	-	DNA primase
511	 49.32	0	554235..554678	-	147	15640542	-	VC0519	-	hypothetical protein
512	 50.46	0	554708..554923	-	71	15640543	rpsU	VC0520	-	30S ribosomal protein S21
513	 50.05	0	555164..556182	+	339	66473506	gcp	VC0521	-	O-sialoglycoprotein endopeptidase
514	 49.94	0	556336..557148	+	270	15640544	-	VC0522	-	beta-ketoadipate enol-lactone hydrolase, putative
515	 52.31	+1	557197..557823	-	208	15640545	-	VC0523	-	putative glycerol-3-phosphate acyltransferase PlsY
516	 53.33	+1	557976..558365	+	129	15640546	-	VC0524	-	dihydroneopterin aldolase FolB, putative
517	 51.19	0	558281..558868	+	195	15640547	-	VC0525	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
518	 45.77	0	558865..559668	+	267	15640548	uppP	VC0526	-	undecaprenyl pyrophosphate phosphatase
519	 49.14	0	559777..560067	+	96	15640549	ftsB	VC0527	-	cell division protein FtsB
520	 52.50	+1	560064..560762	+	232	15640550	ispD	VC0528	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
521	 51.78	+1	560759..561235	+	158	15640551	ispF	VC0529	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
522	 50.55	0	561265..562350	+	361	15640552	truD	VC0530	-	tRNA pseudouridine synthase D
523	 49.87	0	562313..563104	+	263	15640553	surE	VC0531	-	stationary phase survival protein SurE
524	 51.04	0	563097..563723	+	208	15640554	pcm	VC0532	-	protein-L-isoaspartate O-methyltransferase
525	 44.12	0	563723..564658	+	311	15640555	-	VC0533	-	lipoprotein NlpD
526	 46.83	0	564732..565739	+	335	15640556	-	VC0534	-	RNA polymerase sigma-38 factor
527	 52.18	+1	565832..568420	-	862	15640557	-	VC0535	-	DNA mismatch repair protein
528	 48.04	0	568427..568528	+	33	15640558	-	VC0536	-	hypothetical protein
529	 52.14	+1	568688..569575	-	295	15640559	cysM	VC0537	-	cysteine synthase B
530	 49.40	0	569959..570960	+	333	15640560	-	VC0538	-	thiosulfate ABC transporter, periplasmic thiosulfate-binding protein
531	 51.41	0	571037..571888	+	283	15640561	-	VC0539	-	sulfate ABC transporter, permease protein
532	 51.50	0	571899..572762	+	287	15640562	-	VC0540	-	sulfate ABC transporter, permease protein
533	 50.75	0	572759..573889	+	376	15640563	-	VC0541	-	sulfate ABC transporter, ATP-binding protein
534	 51.48	0	574056..574562	+	168	15640564	-	VC0542	-	CinA-related protein
535	 46.97	0	574522..575760	+	412	15640565	recA	VC0543	-	recombinase A
536	 47.71	0	575893..576351	+	152	15640566	recX	VC0544	-	recombination regulator RecX
537	 50.60	0	576524..579106	+	860	15640567	alaS	VC0545	-	alanyl-tRNA synthetase
538	 36.67	-2	579138..579257	+	39	15640568	-	VC0546	-	hypothetical protein
539	 47.73	0	579310..580497	+	395	15640569	-	VC0547	-	aspartate kinase
540	 47.47	0	580589..580786	+	65	15640570	-	VC0548	-	carbon storage regulator
541	 48.87	0	582264..582617	+	117	15640571	-	VC0549	-	oxaloacetate decarboxylase subunit gamma
542	 50.78	0	582646..584439	+	597	15640572	-	VC0550	-	pyruvate carboxylase subunit B
543	 51.19	0	584449..585579	+	376	15640573	-	VC0551	-	oxaloacetate decarboxylase, beta subunit
544	 51.18	0	585639..586652	+	337	15640574	-	VC0552	-	quinone oxidoreductase
545	 48.92	0	586646..587107	+	153	15640575	-	VC0553	-	hypothetical protein
546	 48.93	0	587114..589972	+	952	15640576	-	VC0554	-	insulinase family protease/insulinase family protease
547	 52.94	+1	589962..590063	-	33	15640577	-	VC0555	-	hypothetical protein
548	 50.29	0	590084..591658	+	524	15640578	-	VC0556	-	glutamate--cysteine ligase
549	 48.55	0	591707..592225	+	172	15640579	-	VC0557	-	S-ribosylhomocysteinase
550	 46.60	0	592295..593575	-	426	15640580	-	VC0558	-	hemolysin, putative
551	 45.90	0	593658..594461	-	267	15640581	-	VC0559	-	hypothetical protein
552	 50.00	0	594665..596050	+	461	15640582	-	VC0560	-	signal recognition particle protein
553	 49.40	0	596286..596534	+	82	15640583	rpsP	VC0561	-	30S ribosomal protein S16
554	 44.32	0	596562..597116	+	184	15640584	rimM	VC0562	-	16S rRNA-processing protein
555	 49.60	0	597144..597887	+	247	15640585	trmD	VC0563	-	tRNA (guanine-N(1)-)-methyltransferase
556	 46.61	0	597929..598282	+	117	15640586	rplS	VC0564	-	50S ribosomal protein L19
557	 49.01	0	598403..599461	-	352	15640587	-	VC0565	-	protease DegS
558	 47.92	0	599638..601008	-	456	15640588	-	VC0566	-	protease DO
559	 46.58	0	601137..601574	-	145	15640589	-	VC0567	-	cytochrome d ubiquinol oxidase subunit III
560	 44.93	0	601728..602831	+	367	15640590	-	VC0568	-	hypothetical protein
561	 46.19	0	602761..602970	-	69	15640591	-	VC0569	-	hypothetical protein
562	 45.69	0	603055..603483	+	142	15640592	rplM	VC0570	-	50S ribosomal protein L13
563	 48.60	0	603499..603891	+	130	15640593	rpsI	VC0571	-	30S ribosomal protein S9
564	 42.06	-1	603901..604026	+	41	15640594	-	VC0572	-	hypothetical protein
565	 47.81	0	604219..604812	+	197	15640595	-	VC0573	-	ubiquinol--cytochrome c reductase, iron-sulfur subunit
566	 44.23	0	604812..606077	+	421	15640596	-	VC0574	-	ubiquinol--cytochrome c reductase, cytochrome B
567	 44.44	0	606074..606811	+	245	15640597	-	VC0575	-	ubiquinol--cytochrome c reductase, cytochrome c1
568	 43.55	0	606911..607546	+	211	15640598	sspA	VC0576	-	stringent starvation protein A
569	 46.96	0	607546..608022	+	158	15640599	-	VC0577	-	ClpXP protease specificity-enhancing factor
570	 46.49	0	608090..608659	-	189	15640600	-	VC0578	-	hemolysin, putative
571	 47.55	0	608662..609252	-	196	15640601	-	VC0579	-	phosphoheptose isomerase, putative
572	 43.36	0	609256..609624	-	122	15640602	-	VC0580	-	hypothetical protein
573	 47.09	0	609611..611572	-	653	15640603	-	VC0581	-	putative lipoprotein
574	 45.56	0	611486..612352	+	288	15640604	-	VC0582	-	hypothetical protein
575	 43.59	0	613391..613507	-	38	15640605	-	VC0584	-	hypothetical protein
576	 44.01	0	613472..614005	+	177	15640606	-	VC0585	-	hypoxanthine-guanine phosphoribosyltransferase
577	 46.79	0	614080..614748	-	222	15640607	-	VC0586	-	carbonic anhydrase, putative
578	 50.15	0	614896..616542	+	548	15640608	-	VC0587	-	sulfate permease family protein
579	 46.08	0	616650..616751	+	33	15640609	-	VC0588	-	hypothetical protein
580	 48.37	0	616926..617843	+	305	15640610	-	VC0589	-	ABC transporter, ATP-binding protein
581	 46.69	0	617849..618619	+	256	15640611	-	VC0590	-	permease, putative
582	 49.89	0	618683..619564	-	293	15640612	panC	VC0591	-	pantoate--beta-alanine ligase
583	 48.93	0	619575..620369	-	264	15640613	panB	VC0592	-	3-methyl-2-oxobutanoate hydroxymethyltransferase
584	 51.98	+1	620372..620875	-	167	15640614	-	VC0593	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
585	 51.82	+1	620872..622245	-	457	15640615	-	VC0594	-	polyA polymerase
586	 50.49	0	622336..623250	-	304	15640616	-	VC0595	-	glutamyl-Q tRNA(Asp) synthetase
587	 47.65	0	623299..623745	-	148	15640617	-	VC0596	-	dnaK suppressor protein
588	 48.25	0	623870..624640	-	256	15640618	-	VC0597	-	sugar fermentation stimulation protein A
589	 45.10	0	624628..624729	+	33	15640619	-	VC0598	-	hypothetical protein
590	 42.11	-1	624766..624879	-	37	15640620	-	VC0599	-	hypothetical protein
591	 51.44	0	624851..626203	+	450	15640621	-	VC0600	-	hypothetical protein
592	 55.30	+1	626302..628764	+	820	15640622	-	VC0601	-	ATP-dependent RNA helicase HrpB
593	 51.54	0	628761..631094	+	777	15640623	-	VC0602	-	penicillin-binding protein 1B
594	 49.80	0	631331..633625	+	764	15640624	-	VC0603	-	hypothetical protein
595	 51.27	0	633890..636487	+	865	15640625	-	VC0604	-	bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase
596	 44.88	0	636642..637022	+	126	15640626	-	VC0605	-	hypothetical protein
597	 45.90	0	637173..637538	+	121	15640627	-	VC0606	-	nitrogen regulatory protein P-II
598	 45.70	0	638885..639943	+	352	15640628	-	VC0608	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
599	 49.14	0	640027..641652	+	541	15640629	-	VC0609	-	iron(III) ABC transporter, permease protein
600	 51.94	+1	641652..642683	+	343	15640630	-	VC0610	-	iron(III) ABC transporter, ATP-binding protein
601	 49.19	0	642814..644226	-	470	15640631	-	VC0611	-	phosphoglucomutase/phosphomannomutase, putative
602	 50.50	0	644349..646754	-	801	15640632	-	VC0612	-	cellobiose/cellodextrin-phosphorylase, putative
603	 50.21	0	646873..648786	-	637	15640633	-	VC0613	-	beta-N-acetylhexosaminidase
604	 52.76	+1	648783..649760	-	325	15640634	-	VC0614	-	hypothetical protein
605	 50.14	0	649664..651388	-	574	15640635	-	VC0615	-	endoglucanase-related protein
606	 49.30	0	651445..652440	-	331	15640636	-	VC0616	-	peptide ABC transporter, ATP-binding protein
607	 48.58	0	652483..653466	-	327	15640637	-	VC0617	-	peptide ABC transporter, ATP-binding protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.