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Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 498 48.03 0 537550..538284 - 244 15640530 - VC0506 - hypothetical protein 499 44.07 0 538423..538599 - 58 15640531 - VC0507 - hypothetical protein 500 46.40 0 538603..539046 - 147 15640532 - VC0508 - hypothetical protein 501 46.62 0 539097..539540 - 147 15640533 - VC0509 - hypothetical protein 502 47.89 0 539531..540004 - 157 15640534 - VC0510 - DNA repair protein RadC-related protein 503 32.50 -2 540216..540335 + 39 15640535 - VC0511 - hypothetical protein 504 43.65 0 541319..542908 + 529 15640536 - VC0512 - methyl-accepting chemotaxis protein 505 27.45 -2 544362..545177 + 271 15640537 - VC0513 - AraC/XylS family transcriptional regulator 506 35.25 -2 545174..547054 + 626 15640538 - VC0514 - methyl-accepting chemotaxis protein 507 33.90 -2 547158..548390 + 410 15640539 - VC0515 - hypothetical protein 508 40.34 -1 548780..550021 - 413 15640540 - VC0516 - phage integrase 509 47.39 0 550407..552284 - 625 15640541 - VC0517 - RNA polymerase sigma factor RpoD 510 46.40 0 552383..554145 - 587 15642769 dnaG VC0518 - DNA primase 511 49.32 0 554235..554678 - 147 15640542 - VC0519 - hypothetical protein 512 50.46 0 554708..554923 - 71 15640543 rpsU VC0520 - 30S ribosomal protein S21 513 50.05 0 555164..556182 + 339 66473506 gcp VC0521 - O-sialoglycoprotein endopeptidase 514 49.94 0 556336..557148 + 270 15640544 - VC0522 - beta-ketoadipate enol-lactone hydrolase, putative 515 52.31 +1 557197..557823 - 208 15640545 - VC0523 - putative glycerol-3-phosphate acyltransferase PlsY 516 53.33 +1 557976..558365 + 129 15640546 - VC0524 - dihydroneopterin aldolase FolB, putative 517 51.19 0 558281..558868 + 195 15640547 - VC0525 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 518 45.77 0 558865..559668 + 267 15640548 uppP VC0526 - undecaprenyl pyrophosphate phosphatase 519 49.14 0 559777..560067 + 96 15640549 ftsB VC0527 - cell division protein FtsB 520 52.50 +1 560064..560762 + 232 15640550 ispD VC0528 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase 521 51.78 +1 560759..561235 + 158 15640551 ispF VC0529 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase 522 50.55 0 561265..562350 + 361 15640552 truD VC0530 - tRNA pseudouridine synthase D 523 49.87 0 562313..563104 + 263 15640553 surE VC0531 - stationary phase survival protein SurE 524 51.04 0 563097..563723 + 208 15640554 pcm VC0532 - protein-L-isoaspartate O-methyltransferase 525 44.12 0 563723..564658 + 311 15640555 - VC0533 - lipoprotein NlpD 526 46.83 0 564732..565739 + 335 15640556 - VC0534 - RNA polymerase sigma-38 factor 527 52.18 +1 565832..568420 - 862 15640557 - VC0535 - DNA mismatch repair protein 528 48.04 0 568427..568528 + 33 15640558 - VC0536 - hypothetical protein 529 52.14 +1 568688..569575 - 295 15640559 cysM VC0537 - cysteine synthase B 530 49.40 0 569959..570960 + 333 15640560 - VC0538 - thiosulfate ABC transporter, periplasmic thiosulfate-binding protein 531 51.41 0 571037..571888 + 283 15640561 - VC0539 - sulfate ABC transporter, permease protein 532 51.50 0 571899..572762 + 287 15640562 - VC0540 - sulfate ABC transporter, permease protein 533 50.75 0 572759..573889 + 376 15640563 - VC0541 - sulfate ABC transporter, ATP-binding protein 534 51.48 0 574056..574562 + 168 15640564 - VC0542 - CinA-related protein 535 46.97 0 574522..575760 + 412 15640565 recA VC0543 - recombinase A 536 47.71 0 575893..576351 + 152 15640566 recX VC0544 - recombination regulator RecX 537 50.60 0 576524..579106 + 860 15640567 alaS VC0545 - alanyl-tRNA synthetase 538 36.67 -2 579138..579257 + 39 15640568 - VC0546 - hypothetical protein 539 47.73 0 579310..580497 + 395 15640569 - VC0547 - aspartate kinase 540 47.47 0 580589..580786 + 65 15640570 - VC0548 - carbon storage regulator 541 48.87 0 582264..582617 + 117 15640571 - VC0549 - oxaloacetate decarboxylase subunit gamma 542 50.78 0 582646..584439 + 597 15640572 - VC0550 - pyruvate carboxylase subunit B 543 51.19 0 584449..585579 + 376 15640573 - VC0551 - oxaloacetate decarboxylase, beta subunit 544 51.18 0 585639..586652 + 337 15640574 - VC0552 - quinone oxidoreductase 545 48.92 0 586646..587107 + 153 15640575 - VC0553 - hypothetical protein 546 48.93 0 587114..589972 + 952 15640576 - VC0554 - insulinase family protease/insulinase family protease 547 52.94 +1 589962..590063 - 33 15640577 - VC0555 - hypothetical protein 548 50.29 0 590084..591658 + 524 15640578 - VC0556 - glutamate--cysteine ligase 549 48.55 0 591707..592225 + 172 15640579 - VC0557 - S-ribosylhomocysteinase 550 46.60 0 592295..593575 - 426 15640580 - VC0558 - hemolysin, putative 551 45.90 0 593658..594461 - 267 15640581 - VC0559 - hypothetical protein 552 50.00 0 594665..596050 + 461 15640582 - VC0560 - signal recognition particle protein 553 49.40 0 596286..596534 + 82 15640583 rpsP VC0561 - 30S ribosomal protein S16 554 44.32 0 596562..597116 + 184 15640584 rimM VC0562 - 16S rRNA-processing protein 555 49.60 0 597144..597887 + 247 15640585 trmD VC0563 - tRNA (guanine-N(1)-)-methyltransferase 556 46.61 0 597929..598282 + 117 15640586 rplS VC0564 - 50S ribosomal protein L19 557 49.01 0 598403..599461 - 352 15640587 - VC0565 - protease DegS 558 47.92 0 599638..601008 - 456 15640588 - VC0566 - protease DO 559 46.58 0 601137..601574 - 145 15640589 - VC0567 - cytochrome d ubiquinol oxidase subunit III 560 44.93 0 601728..602831 + 367 15640590 - VC0568 - hypothetical protein 561 46.19 0 602761..602970 - 69 15640591 - VC0569 - hypothetical protein 562 45.69 0 603055..603483 + 142 15640592 rplM VC0570 - 50S ribosomal protein L13 563 48.60 0 603499..603891 + 130 15640593 rpsI VC0571 - 30S ribosomal protein S9 564 42.06 -1 603901..604026 + 41 15640594 - VC0572 - hypothetical protein 565 47.81 0 604219..604812 + 197 15640595 - VC0573 - ubiquinol--cytochrome c reductase, iron-sulfur subunit 566 44.23 0 604812..606077 + 421 15640596 - VC0574 - ubiquinol--cytochrome c reductase, cytochrome B 567 44.44 0 606074..606811 + 245 15640597 - VC0575 - ubiquinol--cytochrome c reductase, cytochrome c1 568 43.55 0 606911..607546 + 211 15640598 sspA VC0576 - stringent starvation protein A 569 46.96 0 607546..608022 + 158 15640599 - VC0577 - ClpXP protease specificity-enhancing factor 570 46.49 0 608090..608659 - 189 15640600 - VC0578 - hemolysin, putative 571 47.55 0 608662..609252 - 196 15640601 - VC0579 - phosphoheptose isomerase, putative 572 43.36 0 609256..609624 - 122 15640602 - VC0580 - hypothetical protein 573 47.09 0 609611..611572 - 653 15640603 - VC0581 - putative lipoprotein 574 45.56 0 611486..612352 + 288 15640604 - VC0582 - hypothetical protein 575 43.59 0 613391..613507 - 38 15640605 - VC0584 - hypothetical protein 576 44.01 0 613472..614005 + 177 15640606 - VC0585 - hypoxanthine-guanine phosphoribosyltransferase 577 46.79 0 614080..614748 - 222 15640607 - VC0586 - carbonic anhydrase, putative 578 50.15 0 614896..616542 + 548 15640608 - VC0587 - sulfate permease family protein 579 46.08 0 616650..616751 + 33 15640609 - VC0588 - hypothetical protein 580 48.37 0 616926..617843 + 305 15640610 - VC0589 - ABC transporter, ATP-binding protein 581 46.69 0 617849..618619 + 256 15640611 - VC0590 - permease, putative 582 49.89 0 618683..619564 - 293 15640612 panC VC0591 - pantoate--beta-alanine ligase 583 48.93 0 619575..620369 - 264 15640613 panB VC0592 - 3-methyl-2-oxobutanoate hydroxymethyltransferase 584 51.98 +1 620372..620875 - 167 15640614 - VC0593 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase 585 51.82 +1 620872..622245 - 457 15640615 - VC0594 - polyA polymerase 586 50.49 0 622336..623250 - 304 15640616 - VC0595 - glutamyl-Q tRNA(Asp) synthetase 587 47.65 0 623299..623745 - 148 15640617 - VC0596 - dnaK suppressor protein 588 48.25 0 623870..624640 - 256 15640618 - VC0597 - sugar fermentation stimulation protein A 589 45.10 0 624628..624729 + 33 15640619 - VC0598 - hypothetical protein 590 42.11 -1 624766..624879 - 37 15640620 - VC0599 - hypothetical protein 591 51.44 0 624851..626203 + 450 15640621 - VC0600 - hypothetical protein 592 55.30 +1 626302..628764 + 820 15640622 - VC0601 - ATP-dependent RNA helicase HrpB 593 51.54 0 628761..631094 + 777 15640623 - VC0602 - penicillin-binding protein 1B 594 49.80 0 631331..633625 + 764 15640624 - VC0603 - hypothetical protein 595 51.27 0 633890..636487 + 865 15640625 - VC0604 - bifunctional aconitate hydratase 2/2-methylisocitrate dehydratase 596 44.88 0 636642..637022 + 126 15640626 - VC0605 - hypothetical protein 597 45.90 0 637173..637538 + 121 15640627 - VC0606 - nitrogen regulatory protein P-II 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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