version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 5 46.51 0 3899..4156 - 85 15640037 - VC0005 - hypothetical protein 6 44.82 0 4123..4479 - 118 15640038 rnpA VC0006 - ribonuclease P 7 50.00 0 4492..4629 - 45 15640039 rpmH VC0007 - 50S ribosomal protein L34 8 49.46 0 4871..5608 - 245 15640040 - VC0008 - amino acid ABC transporter, ATP-binding protein 9 50.30 0 5605..6276 - 223 15640041 - VC0009 - amino acid ABC transproter, permease protein 10 47.52 0 6354..7100 - 248 15640042 - VC0010 - amino acid ABC transporter, periplasmic amino acid-binding portion 11 41.86 -1 7224..7352 + 42 15640043 - VC0011 - hypothetical protein 12 50.67 0 7397..8815 + 472 15640044 dnaA VC0012 - chromosomal replication initiation protein 13 49.77 0 8873..9973 + 366 15640045 - VC0013 - DNA polymerase III subunit beta 14 47.53 0 9991..11082 + 363 15640046 recF VC0014 - recombination protein F 15 50.50 0 11103..13520 + 805 15640047 gyrB VC0015 - DNA gyrase subunit B 16 49.59 0 13876..14367 + 163 15640048 - VC0016 - hypothetical protein 17 43.59 0 14377..14493 + 38 15640049 - VC0017 - hypothetical protein 18 45.66 0 14769..15206 + 145 15640050 - VC0018 - 16 kDa heat shock protein A 19 49.88 0 15294..16550 - 418 15640051 avtA VC0019 - valine--pyruvate transaminase 20 52.06 +1 16869..18935 - 688 15640052 glyS VC0020 - glycyl-tRNA synthetase subunit beta 21 49.95 0 18950..19942 - 330 15640053 glyQ VC0021 - glycyl-tRNA synthetase subunit alpha 22 47.10 0 20235..20837 + 200 15640054 - VC0022 - hypothetical protein 23 47.67 0 20943..21200 + 85 15640055 - VC0023 - NADH dehydrogenase subunit II-related protein 24 49.00 0 21287..21535 - 82 15640056 - VC0024 - cell developmental protein SirA 25 46.27 0 21656..21856 + 66 15640057 - VC0025 - hypothetical protein 26 52.09 +1 22028..23008 - 326 15640058 - VC0026 - zinc-binding alcohol dehydrogenase 27 52.32 +1 23256..24788 - 510 15640059 - VC0027 - threonine dehydratase 28 54.72 +1 24792..26633 - 613 15640060 - VC0028 - dihydroxy-acid dehydratase 29 53.65 +1 26643..27602 - 319 15640061 - VC0029 - branched-chain amino acid aminotransferase 30 45.61 0 27593..27877 - 94 15640062 ilvM VC0030 - acetolactate synthase 2 regulatory subunit 31 55.31 +1 27889..29535 - 548 15640063 - VC0031 - acetolactate synthase 2 catalytic subunit 32 53.61 +1 30069..31592 + 507 15640064 - VC0032 - ComM-related protein 33 49.94 0 31682..32566 + 294 15640065 - VC0033 - hypothetical protein 34 46.10 0 32644..33246 - 200 15640066 - VC0034 - thiol:disulfide interchange protein 35 49.75 0 33277..34263 - 328 161582037 - VC0035 - serine/threonine protein kinase 36 49.06 0 34311..35798 - 495 15640068 - VC0036 - FixG-related protein 37 42.29 -1 36152..36430 - 92 15640069 - VC0037 - hypothetical protein 38 52.38 +1 36527..36694 - 55 15640070 - VC0038 - hypothetical protein 39 51.25 0 36928..37770 + 280 15640071 - VC0039 - SpoOM-related protein 40 47.22 0 37848..38495 + 215 15640072 - VC0040 - hemolysin, putative 41 50.08 0 38534..39190 - 218 15640073 - VC0041 - hypothetical protein 42 51.31 0 39103..40548 - 481 15640074 - VC0042 - potassium uptake protein TrkH 43 52.21 +1 40560..41936 - 458 15640075 trkA VC0043 - potassium transporter peripheral membrane component 44 54.41 +1 41998..43302 - 434 15640076 - VC0044 - sun protein 45 51.48 0 43334..44281 - 315 15640077 fmt VC0045 - methionyl-tRNA formyltransferase 46 48.04 0 44299..44808 - 169 15640078 def VC0046 - peptide deformylase 47 50.17 0 44900..46075 + 391 15640079 - VC0047 - hypothetical protein 48 51.34 0 46075..47190 + 371 15640080 - VC0048 - smf protein 49 46.54 0 47193..47669 + 158 15640081 - VC0049 - hypothetical protein 50 49.04 0 47679..48251 + 190 15640082 - VC0050 - DNA topoisomerase I-related protein 51 51.23 0 48324..49457 - 377 15640083 - VC0051 - phosphoribosylaminoimidazole carboxylase ATPase subunit 52 52.67 +1 49461..49946 - 161 15640084 - VC0052 - phosphoribosylaminoimidazole carboxylase catalytic subunit 53 43.65 0 49961..50086 + 41 15640085 - VC0053 - hypothetical protein 54 53.62 +1 50104..50670 + 188 15640086 - VC0054 - Sua5/YciO/YrdC family protein 55 49.89 0 50689..51606 + 305 15640087 - VC0055 - coproporphyrinogen III oxidase 56 50.06 0 51668..52504 + 278 15640088 aroE VC0056 - shikimate 5-dehydrogenase 57 44.93 0 52501..52776 + 91 15640089 - VC0057 - hypothetical protein 58 47.75 0 52757..53311 - 184 15640090 - VC0058 - carbonic anhydrase 59 40.43 -1 53497..53637 + 46 15640091 - VC0059 - hypothetical protein 60 43.31 0 59356..59736 + 126 15640092 ccrB VC0060 - camphor resistance protein CrcB 61 47.57 0 59988..61925 + 645 15640093 - VC0061 - thiamine biosynthesis protein ThiC 62 46.41 0 61929..63251 + 440 15640094 thiE VC0062 - thiamine-phosphate pyrophosphorylase 63 50.32 0 63238..64014 + 258 15640095 - VC0063 - thiF protein 64 48.45 0 63957..64214 + 85 15640096 - VC0064 - sulfur carrier protein ThiS 65 50.45 0 64220..64990 + 256 15640097 thiG VC0065 - thiazole synthase 66 47.80 0 64987..66099 + 370 15640098 thiH VC0066 - thiamine biosynthesis protein ThiH 67 50.56 0 66324..68117 - 597 15640099 - VC0067 - aminopeptidase P 68 47.46 0 68250..69233 - 327 15640100 - VC0068 - LysR family transcriptional regulator 69 50.12 0 69296..70498 + 400 15640101 - VC0069 - multidrug resistance protein, putative 70 46.67 0 70602..70886 + 94 15640102 - VC0070 - hypothetical protein 71 45.45 0 70975..71436 - 153 15640103 - VC0071 - DNA-binding transcriptional regulator AsnC 72 50.11 0 71512..73818 + 768 15640104 - VC0072 - sensory box/GGDEF family protein 73 52.22 +1 73785..74663 + 292 15640105 - VC0073 - hypothetical protein 74 50.77 0 74781..75170 + 129 15640106 - VC0074 - hypothetical protein 75 48.31 0 75266..76153 - 295 15640107 - VC0075 - MadN protein 76 48.59 0 76210..76635 - 141 15640108 - VC0076 - universal stress protein A 77 43.75 0 76681..76776 + 31 15640109 - VC0077 - hypothetical protein 78 44.51 0 76782..77327 + 181 15640110 - VC0078 - ferritin 79 47.53 0 77403..77726 + 107 15640111 - VC0079 - universal stress protein UspB 80 51.96 +1 77859..79055 + 398 15640112 - VC0080 - hypothetical protein 81 50.66 0 79052..79963 - 303 15640113 - VC0081 - hypothetical protein 82 50.58 0 80077..81618 + 513 15640114 - VC0082 - hypothetical protein 83 49.55 0 81663..82445 + 260 15640115 ubiE VC0083 - ubiquinone/menaquinone biosynthesis methyltransferase 84 50.80 0 82454..83077 + 207 15640116 - VC0084 - hypothetical protein 85 49.17 0 83074..84708 + 544 15640117 ubiB VC0085 - putative ubiquinone biosynthesis protein UbiB 86 44.58 0 84768..85016 + 82 15640118 tatA VC0086 - twin argininte translocase protein A 87 52.99 +1 85020..85421 + 133 15640119 - VC0087 - sec-independent translocase 88 48.47 0 85510..86262 + 250 15640120 - VC0088 - hypothetical protein 89 47.70 0 86574..87575 + 333 15640121 - VC0089 - cytochrome c551 peroxidase 90 51.28 0 87681..89045 - 454 15640122 - VC0090 - DNA-damage-inducible protein F 91 50.34 0 89116..89985 - 289 15640123 - VC0091 - O-methyltransferase-related protein 92 52.70 +1 90013..90642 - 209 15640124 - VC0092 - LexA repressor 93 51.79 +1 90962..93388 + 808 161582036 - VC0093 - glycerol-3-phosphate acyltransferase 94 49.59 0 93464..94318 - 284 15640126 ubiA VC0094 - 4-hydroxybenzoate octaprenyltransferase 95 46.74 0 94319..94870 - 183 15640127 - VC0095 - chorismate--pyruvate lyase 96 39.39 -1 94893..94991 - 32 15640128 - VC0096 - hypothetical protein 97 45.74 0 95062..95472 + 136 15640129 - VC0097 - flagellar basal body-associated protein FliL-like protein 98 51.67 0 95592..97571 - 659 15640130 - VC0098 - methyl-accepting chemotaxis protein 99 48.32 0 97946..98779 - 277 15640131 - VC0099 - glpG protein 100 46.11 0 98786..99106 - 106 15640132 glpE VC0100 - thiosulfate sulfurtransferase 101 36.57 -2 99187..99402 - 71 15640133 - VC0101 - hypothetical protein 102 38.30 -2 99635..99775 - 46 15640134 - VC0102 - hypothetical protein 103 45.96 0 99867..100634 - 255 15640135 - VC0103 - hypothetical protein 104 47.41 0 100690..100824 - 44 15640136 - VC0104 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.