IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
436	 50.86	0	470451..471260	-	269	15640468	apaH	VC0441	-	diadenosine tetraphosphatase
437	 47.77	0	471271..471651	-	126	15640469	apaG	VC0442	-	ApaG
438	 47.70	0	471723..472571	-	282	15640470	ksgA	VC0443	-	dimethyladenosine transferase
439	 50.15	0	472552..473544	-	330	15640471	pdxA	VC0444	-	4-hydroxythreonine-4-phosphate dehydrogenase
440	 48.23	0	473534..474829	-	431	15640472	-	VC0445	-	survival protein SurA
441	 46.66	0	474882..477245	-	787	15640473	-	VC0446	-	organic solvent tolerance protein
442	 50.29	0	477392..478246	+	284	15640474	djlA	VC0447	-	DNA-J like membrane chaperone protein
443	 36.84	-2	478258..478371	-	37	15640475	-	VC0448	-	hypothetical protein
444	 50.37	0	479294..480919	-	541	15640476	-	VC0449	-	methyl-accepting chemotaxis protein
445	 46.60	0	481683..482873	-	396	15640477	-	VC0450	-	membrane-bound lytic murein transglycosylase C
446	 45.79	0	482912..483184	-	90	15640478	-	VC0451	-	hypothetical protein
447	 51.41	0	483198..484259	-	353	15640479	-	VC0452	-	A/G-specific adenine glycosylase
448	 51.94	+1	484499..485218	+	239	15640480	trmB	VC0453	-	tRNA (guanine-N(7))-methyltransferase
449	 51.10	0	485299..486249	+	316	15640481	-	VC0454	-	glutaminase
450	 52.04	+1	486470..487645	-	391	15640482	-	VC0455	-	coproporphyrinogen III oxidase
451	 52.74	+1	487639..488241	-	200	15640483	-	VC0456	-	putative deoxyribonucleotide triphosphate pyrophosphatase
452	 47.69	0	488311..488742	-	143	15640484	-	VC0457	-	hypothetical protein
453	 53.26	+1	488788..489078	-	96	15640485	-	VC0458	-	hypothetical protein
454	 51.79	+1	489078..489635	-	185	15640486	-	VC0459	-	hypothetical protein
455	 54.58	+1	489689..490507	-	272	15640487	-	VC0460	-	pyrroline-5-carboxylate reductase
456	 49.37	0	490560..491270	-	236	15640488	-	VC0461	-	hypothetical protein
457	 48.75	0	491296..492333	+	345	15640489	-	VC0462	-	twitching motility protein PilT
458	 50.77	0	492348..493454	+	368	15640490	-	VC0463	-	twitching motility protein PilT
459	 51.62	0	493566..494369	+	267	15640491	-	VC0464	-	LuxR family transcriptional regulator
460	 50.88	0	494454..495758	+	434	15640492	-	VC0465	-	tyrosyl-tRNA synthetase
461	 51.54	0	495796..496218	-	140	15640493	-	VC0466	-	Holliday junction resolvase-like protein
462	 51.24	0	496299..496862	-	187	161582023	-	VC0467	-	hypothetical protein
463	 49.32	0	496898..497854	-	318	15640495	-	VC0468	-	glutathione synthetase
464	 51.50	0	497868..498599	-	243	15640496	-	VC0469	-	hypothetical protein
465	 49.86	0	498737..499432	-	231	15640497	-	VC0470	-	extracellular deoxyribonuclease
466	 50.92	0	499560..500048	-	162	15640498	-	VC0471	-	hypothetical protein
467	 50.26	0	500170..501327	-	385	15640499	-	VC0472	-	S-adenosylmethionine synthetase
468	 53.43	+1	501605..503689	+	694	15640500	-	VC0473	-	transketolase
469	 50.95	0	503761..504657	-	298	15640501	-	VC0474	-	iron-regulated virulence regulatory protein IrgB
470	 49.82	0	504802..506760	+	652	15640502	-	VC0475	-	enterobactin receptor protein
471	 45.81	0	506912..507937	+	341	161582022	-	VC0476	-	erythrose 4-phosphate dehydrogenase
472	 48.94	0	508071..509249	+	392	15640504	pgk	VC0477	-	phosphoglycerate kinase
473	 47.17	0	509405..510481	+	358	15640505	-	VC0478	-	fructose-bisphosphate aldolase
474	 31.25	-2	510669..510764	+	31	15640506	-	VC0479	-	hypothetical protein
475	 45.25	0	510777..511640	+	287	15640507	-	VC0480	-	hypothetical protein
476	 45.13	0	511704..512339	-	211	15640508	-	VC0481	-	LysE/YggA family protein
477	 46.60	0	512504..513400	+	298	15640509	-	VC0482	-	chromosome replication initiation inhibitor protein
478	 46.44	0	513480..514196	+	238	15640510	-	VC0483	-	hypothetical protein
479	 39.39	-1	514529..514660	+	43	15640511	-	VC0484	-	hypothetical protein
480	 47.56	0	514732..516144	-	470	15640512	-	VC0485	-	pyruvate kinase
481	 45.21	0	516560..517342	+	260	15640513	-	VC0486	-	DeoR family transcriptional regulator
482	 49.48	0	517405..519237	+	610	15640514	-	VC0487	-	D-fructose-6-phosphate amidotransferase
483	 50.09	0	519298..520377	-	359	15640515	-	VC0488	-	extracellular solute-binding protein, putative
484	 48.32	0	520634..522394	-	586	15640516	-	VC0489	-	hemolysin, putative
485	 37.36	-2	523156..525117	-	653	15640517	-	VC0490	-	hypothetical protein
486	 34.45	-2	525118..525654	-	178	15640518	-	VC0491	-	hypothetical protein
487	 37.53	-2	525623..526789	-	388	15640519	-	VC0492	-	hypothetical protein
488	 39.27	-1	527045..527920	-	291	15640520	-	VC0493	-	hypothetical protein
489	 43.41	0	528305..528949	+	214	15640521	-	VC0494	-	hypothetical protein
490	 45.19	0	529011..529685	+	224	15640522	-	VC0495	-	hypothetical protein
491	 41.83	-1	529739..530338	+	199	15640523	-	VC0496	-	hypothetical protein
492	 44.78	0	530402..530602	+	66	15640524	-	VC0497	-	transcriptional regulator
493	 46.49	0	530684..531124	+	146	15640525	-	VC0498	-	ribonuclease H
494	 41.33	-1	534198..534722	-	174	15640526	-	VC0502	-	type IV pilin, putative
495	 43.79	0	535418..536698	+	426	15640527	-	VC0503	-	hypothetical protein
496	 45.18	0	536876..537103	-	75	15640528	-	VC0504	-	hypothetical protein
497	 49.32	0	537151..537519	-	122	15640529	-	VC0505	-	hypothetical protein
498	 48.03	0	537550..538284	-	244	15640530	-	VC0506	-	hypothetical protein
499	 44.07	0	538423..538599	-	58	15640531	-	VC0507	-	hypothetical protein
500	 46.40	0	538603..539046	-	147	15640532	-	VC0508	-	hypothetical protein
501	 46.62	0	539097..539540	-	147	15640533	-	VC0509	-	hypothetical protein
502	 47.89	0	539531..540004	-	157	15640534	-	VC0510	-	DNA repair protein RadC-related protein
503	 32.50	-2	540216..540335	+	39	15640535	-	VC0511	-	hypothetical protein
504	 43.65	0	541319..542908	+	529	15640536	-	VC0512	-	methyl-accepting chemotaxis protein
505	 27.45	-2	544362..545177	+	271	15640537	-	VC0513	-	AraC/XylS family transcriptional regulator
506	 35.25	-2	545174..547054	+	626	15640538	-	VC0514	-	methyl-accepting chemotaxis protein
507	 33.90	-2	547158..548390	+	410	15640539	-	VC0515	-	hypothetical protein
508	 40.34	-1	548780..550021	-	413	15640540	-	VC0516	-	phage integrase
509	 47.39	0	550407..552284	-	625	15640541	-	VC0517	-	RNA polymerase sigma factor RpoD
510	 46.40	0	552383..554145	-	587	15642769	dnaG	VC0518	-	DNA primase
511	 49.32	0	554235..554678	-	147	15640542	-	VC0519	-	hypothetical protein
512	 50.46	0	554708..554923	-	71	15640543	rpsU	VC0520	-	30S ribosomal protein S21
513	 50.05	0	555164..556182	+	339	66473506	gcp	VC0521	-	O-sialoglycoprotein endopeptidase
514	 49.94	0	556336..557148	+	270	15640544	-	VC0522	-	beta-ketoadipate enol-lactone hydrolase, putative
515	 52.31	+1	557197..557823	-	208	15640545	-	VC0523	-	putative glycerol-3-phosphate acyltransferase PlsY
516	 53.33	+1	557976..558365	+	129	15640546	-	VC0524	-	dihydroneopterin aldolase FolB, putative
517	 51.19	0	558281..558868	+	195	15640547	-	VC0525	-	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
518	 45.77	0	558865..559668	+	267	15640548	uppP	VC0526	-	undecaprenyl pyrophosphate phosphatase
519	 49.14	0	559777..560067	+	96	15640549	ftsB	VC0527	-	cell division protein FtsB
520	 52.50	+1	560064..560762	+	232	15640550	ispD	VC0528	-	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
521	 51.78	+1	560759..561235	+	158	15640551	ispF	VC0529	-	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
522	 50.55	0	561265..562350	+	361	15640552	truD	VC0530	-	tRNA pseudouridine synthase D
523	 49.87	0	562313..563104	+	263	15640553	surE	VC0531	-	stationary phase survival protein SurE
524	 51.04	0	563097..563723	+	208	15640554	pcm	VC0532	-	protein-L-isoaspartate O-methyltransferase
525	 44.12	0	563723..564658	+	311	15640555	-	VC0533	-	lipoprotein NlpD
526	 46.83	0	564732..565739	+	335	15640556	-	VC0534	-	RNA polymerase sigma-38 factor
527	 52.18	+1	565832..568420	-	862	15640557	-	VC0535	-	DNA mismatch repair protein
528	 48.04	0	568427..568528	+	33	15640558	-	VC0536	-	hypothetical protein
529	 52.14	+1	568688..569575	-	295	15640559	cysM	VC0537	-	cysteine synthase B
530	 49.40	0	569959..570960	+	333	15640560	-	VC0538	-	thiosulfate ABC transporter, periplasmic thiosulfate-binding protein
531	 51.41	0	571037..571888	+	283	15640561	-	VC0539	-	sulfate ABC transporter, permease protein
532	 51.50	0	571899..572762	+	287	15640562	-	VC0540	-	sulfate ABC transporter, permease protein
533	 50.75	0	572759..573889	+	376	15640563	-	VC0541	-	sulfate ABC transporter, ATP-binding protein
534	 51.48	0	574056..574562	+	168	15640564	-	VC0542	-	CinA-related protein
535	 46.97	0	574522..575760	+	412	15640565	recA	VC0543	-	recombinase A
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.