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IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961

Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).

A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26

Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
320	 48.01	0	338242..338943	+	233	15640352	rplA	VC0325	-	50S ribosomal protein L1
321	 48.06	0	339213..339701	+	162	15640353	rplJ	VC0326	-	50S ribosomal protein L10
322	 45.08	0	339768..340133	+	121	15640354	rplL	VC0327	-	50S ribosomal protein L7/L12
323	 49.27	0	340272..344399	+	1375	15640355	rpoB	VC0328	-	DNA-directed RNA polymerase subunit beta
324	 50.59	0	344504..348709	+	1401	15640356	-	VC0329	-	DNA-directed RNA polymerase subunit beta'
325	 44.85	0	348820..349314	-	164	15640357	-	VC0330	-	anti-RNA polymerase sigma 70 factor
326	 50.37	0	349459..350268	+	269	15640358	nudC	VC0331	-	NADH pyrophosphatase
327	 50.56	0	350511..351590	+	359	15640359	hemE	VC0332	-	uroporphyrinogen decarboxylase
328	 45.68	0	351596..352324	+	242	15640360	-	VC0333	-	TetR family transcriptional regulator
329	 51.35	0	352411..353370	+	319	15640361	-	VC0334	-	hypothetical protein
330	 48.56	0	353367..354515	-	382	15640362	-	VC0335	-	NlpD-related protein
331	 51.08	0	354684..356216	-	510	15640363	-	VC0336	-	phosphoglyceromutase
332	 52.44	+1	356359..357300	-	313	15640364	-	VC0337	-	hypothetical protein
333	 50.24	0	357398..358834	-	478	15640365	-	VC0338	-	transporter, putative
334	 52.45	+1	359021..359878	-	285	15640366	-	VC0339	-	phosphatidylserine decarboxylase
335	 48.02	0	359871..361034	-	387	15640367	-	VC0340	-	ribosome-associated GTPase
336	 45.60	0	361157..361702	+	181	15640368	-	VC0341	-	oligoribonuclease
337	 48.38	0	363575..364684	-	369	15640369	-	VC0342	-	iron-sulfur cluster-binding protein
338	 43.56	0	364787..365353	+	188	15640370	-	VC0343	-	hypothetical protein
339	 47.48	0	365320..367065	+	581	15640371	-	VC0344	-	N-acetylmuramoyl-L-alanine amidase
340	 50.36	0	367072..369033	+	653	15640372	mutL	VC0345	-	DNA mismatch repair protein
341	 48.84	0	369030..369977	+	315	15640373	miaA	VC0346	-	tRNA delta(2)-isopentenylpyrophosphate transferase
342	 46.59	0	370149..370412	+	87	15640374	hfq	VC0347	-	RNA-binding protein Hfq
343	 48.06	0	370445..371734	+	429	15640375	-	VC0348	-	putative GTPase HflX
344	 49.49	0	371780..372967	+	395	15640376	-	VC0349	-	hflK protein
345	 46.89	0	372970..373950	+	326	15640377	-	VC0350	-	hflC protein
346	 51.21	0	373993..374199	+	68	15640378	-	VC0351	-	hypothetical protein
347	 44.74	0	374240..374467	-	75	161582027	-	VC0352	-	hypothetical protein
348	 49.29	0	374470..375453	-	327	15640380	-	VC0353	-	hypothetical protein
349	 46.92	0	375590..376369	+	259	15640381	-	VC0354	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
350	 46.20	0	376568..377290	+	240	15640382	-	VC0355	-	hypothetical protein
351	 48.99	0	377287..377682	+	131	15640383	-	VC0356	-	hypothetical protein
352	 46.78	0	377679..378035	+	118	15640384	-	VC0357	-	hypothetical protein
353	 42.39	-1	378045..378320	+	91	15640385	-	VC0358	-	hypothetical protein
354	 46.40	0	378505..378879	+	124	15640386	rpsL	VC0359	-	30S ribosomal protein S12
355	 46.28	0	378995..379465	+	156	15640387	-	VC0360	-	30S ribosomal protein S7
356	 47.73	0	379541..381637	+	698	15640388	-	VC0361	-	elongation factor G
357	 49.11	0	381760..382944	+	394	15640389	tuf	VC0362	-	elongation factor Tu
358	 44.14	0	383065..383175	-	36	15640390	-	VC0363	-	hypothetical protein
359	 43.92	0	383247..383435	+	62	15640391	-	VC0364	-	bacterioferritin-associated ferredoxin
360	 40.25	-1	383505..383981	+	158	15640392	-	VC0365	-	bacterioferritin
361	 46.88	0	384193..384561	+	122	15640393	rpsF	VC0366	-	30S ribosomal protein S6
362	 45.54	0	384569..384871	+	100	15640394	-	VC0367	-	primosomal replication protein N
363	 45.18	0	384887..385114	+	75	15640395	rpsR	VC0368	-	30S ribosomal protein S18
364	 46.00	0	385148..385597	+	149	15640396	rplI	VC0369	-	50S ribosomal protein L9
365	 43.33	0	385659..386468	-	269	15640397	-	VC0370	-	hypothetical protein
366	 50.46	0	386594..388000	+	468	15640398	-	VC0371	-	replicative DNA helicase
367	 52.39	+1	387972..389099	+	375	15640399	alr	VC0372	-	alanine racemase
368	 48.10	0	389182..389601	-	139	15640400	-	VC0373	-	hypothetical protein
369	 48.88	0	389886..391538	+	550	15640401	pgi	VC0374	-	glucose-6-phosphate isomerase
370	 40.74	-1	391571..391678	-	35	15640402	-	VC0375	-	hypothetical protein
371	 48.94	0	391741..392919	+	392	15640403	-	VC0376	-	hypothetical protein
372	 47.40	0	393036..393497	-	153	15640404	-	VC0377	-	hypothetical protein
373	 43.80	0	393507..393974	-	155	15640405	-	VC0378	-	zinc uptake regulation protein, putative
374	 50.51	0	394329..395312	+	327	15640406	-	VC0379	-	tRNA-dihydrouridine synthase A
375	 34.96	-2	395326..395448	-	40	15640407	-	VC0380	-	hypothetical protein
376	 47.00	0	395774..396439	+	221	15640408	-	VC0381	-	hypothetical protein
377	 35.67	-2	396393..396563	+	56	15640409	-	VC0382	-	hypothetical protein
378	 46.30	0	396521..396790	+	89	15640410	-	VC0383	-	hypothetical protein
379	 48.67	0	396876..398720	+	614	15640411	-	VC0384	-	sulfite reductase (NADPH) flavoprotein alpha-component
380	 49.19	0	398720..400453	+	577	15640412	-	VC0385	-	sulfite reductase subunit beta
381	 45.41	0	400446..401207	+	253	15640413	-	VC0386	-	phosphoadenosine phosphosulfate reductase
382	 42.71	-1	401344..401439	+	31	15640414	-	VC0387	-	hypothetical protein
383	 35.00	-2	401597..401716	+	39	15640415	-	VC0388	-	hypothetical protein
384	 44.49	0	407506..408840	-	444	15640416	-	VC0389	-	Na+/H+ antiporter, putative
385	 49.74	0	409037..412717	+	1226	15640417	metH	VC0390	-	B12-dependent methionine synthase
386	 50.07	0	412790..414229	-	479	15640418	-	VC0391	-	aspartate kinase III
387	 51.12	0	414609..415727	+	372	15640419	-	VC0392	-	aminotransferase, class V
388	 48.22	0	415806..417599	-	597	15640420	-	VC0393	-	hypothetical protein
389	 48.92	0	417655..420477	-	940	15640421	uvrA	VC0394	-	excinuclease ABC subunit A
390	 48.06	0	420633..421508	-	291	15640422	-	VC0395	-	UTP--glucose-1-phosphate uridylyltransferase
391	 43.72	0	421678..422322	-	214	15640423	-	VC0396	-	LuxR family transcriptional regulator
392	 49.81	0	422614..423147	+	177	15640424	-	VC0397	-	single-strand DNA-binding protein
393	 48.47	0	423262..425283	+	673	15640425	-	VC0398	-	regulatory protein CsrD
394	 48.89	0	425296..426735	+	479	15640426	-	VC0399	-	MSHA biogenesis protein MshI
395	 48.39	0	426732..427382	+	216	15640427	-	VC0400	-	MSHA biogenesis protein MshJ
396	 50.00	0	427375..427692	+	105	15640428	-	VC0401	-	MSHA biogenesis protein MshK
397	 47.74	0	427707..429386	+	559	15640429	-	VC0402	-	MSHA biogenesis protein MshL
398	 50.00	0	429391..430236	+	281	15640430	-	VC0403	-	MSHA biogenesis protein MshM
399	 50.43	0	430215..431384	+	389	15640431	-	VC0404	-	MSHA biogenesis protein MshN
400	 50.06	0	431374..433101	+	575	15640432	-	VC0405	-	MSHA biogenesis protein MshE
401	 48.94	0	433110..434333	+	407	15640433	-	VC0406	-	MSHA biogenesis protein MshG
402	 46.80	0	434336..434788	+	150	15640434	-	VC0407	-	MSHA biogenesis protein MshF
403	 47.38	0	434833..435423	+	196	15640435	-	VC0408	-	MSHA pilin protein MshB
404	 43.02	-1	435449..435985	+	178	15640436	-	VC0409	-	MSHA pilin protein MshA
405	 50.51	0	436022..436510	+	162	15640437	-	VC0410	-	MSHA pilin protein MshC
406	 47.39	0	436458..437069	+	203	15640438	-	VC0411	-	MSHA pilin protein MshD
407	 48.90	0	437069..437839	+	256	15640439	-	VC0412	-	hypothetical protein
408	 48.38	0	437805..438236	+	143	15640440	-	VC0413	-	hypothetical protein
409	 45.81	0	438229..441987	+	1252	15640441	-	VC0414	-	hypothetical protein
410	 50.77	0	442155..443198	+	347	15640442	-	VC0415	-	rod shape-determining protein MreB
411	 48.48	0	443255..444145	+	296	15640443	-	VC0416	-	rod shape-determining protein MreC
412	 49.28	0	444132..444620	+	162	15640444	-	VC0417	-	rod shape-determining protein MreD
413	 51.29	0	444563..445180	+	205	15640445	maf	VC0418	-	Maf-like protein
414	 49.39	0	445206..446675	+	489	15640446	-	VC0419	-	ribonuclease G
415	 50.34	0	446688..450563	+	1291	15640447	-	VC0420	-	hypothetical protein
416	 52.17	+1	450572..451399	+	275	15640448	-	VC0421	-	hypothetical protein
417	 51.38	0	451399..452844	+	481	15640449	-	VC0422	-	tldD protein
418	 50.82	0	452940..454163	-	407	15640450	-	VC0423	-	arginine deiminase
419	 43.50	0	454890..455312	+	140	15640451	-	VC0424	-	hypothetical protein
47.43	MEAN

4.26	STD DEV

Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.