IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
279	 51.35	0	289352..291022	-	556	15640311	-	VC0282	-	methyl-accepting chemotaxis protein
280	 55.46	+1	291257..291934	-	225	15640312	-	VC0283	-	hypothetical protein
281	 55.12	+1	294219..294824	-	201	15640313	-	VC0285	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
282	 54.76	+1	294837..296213	-	458	15640314	-	VC0286	-	gluconate permease, putative
283	 50.19	0	296367..296882	+	171	15640315	-	VC0287	-	thermoresistant gluconokinase
284	 54.26	+1	296879..298675	+	598	161582030	-	VC0288	-	phosphogluconate dehydratase
285	 51.85	+1	298752..299750	-	332	15640317	-	VC0289	-	gluconate utilization system gnt-I transcriptional repressor
286	 42.76	-1	299889..300185	-	98	15640318	fis	VC0290	-	DNA-binding protein Fis
287	 49.90	0	300209..301204	-	331	15640319	-	VC0291	-	NifR3/Smm1 family protein
288	 40.86	-1	301185..301277	-	30	15640320	-	VC0292	-	hypothetical protein
289	 53.60	+1	301317..302204	-	295	15640321	prmA	VC0293	-	ribosomal protein L11 methyltransferase
290	 42.74	-1	302185..302301	-	38	15640322	-	VC0294	-	hypothetical protein
291	 51.49	0	302413..303756	-	447	15640323	-	VC0295	-	acetyl-CoA carboxylase biotin carboxylase subunit
292	 50.43	0	303771..304232	-	153	161582029	-	VC0296	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
293	 45.92	0	304289..304741	-	150	15640325	-	VC0297	-	3-dehydroquinate dehydratase
294	 51.33	0	305121..307070	-	649	161582028	-	VC0298	-	acetyl-CoA synthetase
295	 50.89	0	307273..307944	-	223	15640327	-	VC0299	-	DNA polymerase III subunit epsilon
296	 50.99	0	307911..309734	-	607	15640328	-	VC0300	-	hypothetical protein
297	 47.83	0	309689..309895	-	68	15640329	-	VC0301	-	hypothetical protein
298	 53.48	+1	309994..311184	+	396	15640330	-	VC0302	-	putative 3-phenylpropionic acid transporter
299	 51.92	+1	311277..314720	+	1147	15640331	-	VC0303	-	sensor histidine kinase
300	 50.20	0	314843..316336	-	497	15640332	-	VC0304	-	guanosine pentaphosphate phosphohydrolase
301	 50.95	0	316344..317660	-	438	15640333	-	VC0305	-	ATP-dependent RNA helicase RhlB
302	 48.01	0	317772..318098	+	108	15640334	-	VC0306	-	thioredoxin
303	 47.62	0	318296..319555	+	419	15640335	rho	VC0307	-	transcription termination factor Rho
304	 46.42	0	319654..320646	+	330	15640336	-	VC0308	-	hypothetical protein
305	 48.75	0	320728..322569	+	613	15640337	-	VC0309	-	hypothetical protein
306	 47.78	0	322566..322835	+	89	15640338	-	VC0311	-	ferredoxin
307	 48.80	0	322851..323561	+	236	15640339	fre	VC0312	-	FMN reductase
308	 43.75	0	323721..323816	+	31	15640340	-	VC0313	-	hypothetical protein
309	 34.85	-2	323974..324171	+	65	15640341	-	VC0314	-	hypothetical protein
310	 44.74	0	329711..331051	-	446	15640342	pssA	VC0315	-	phosphatidylserine synthase
311	 40.52	-1	331022..331174	+	50	15640343	-	VC0316	-	hypothetical protein
312	 45.64	0	331146..331592	-	148	15640344	-	VC0317	-	hypothetical protein
313	 46.65	0	331605..332678	+	357	15640345	murB	VC0318	-	UDP-N-acetylenolpyruvoylglucosamine reductase
314	 48.81	0	332675..333637	+	320	15640346	-	VC0319	-	biotin--protein ligase
315	 43.88	0	333687..334814	-	375	15640347	-	VC0320	-	pantothenate kinase
316	 49.03	0	335326..336510	+	394	15640348	tuf	VC0321	-	elongation factor Tu
317	 48.48	0	336719..337114	+	131	15640349	secE	VC0322	-	preprotein translocase subunit SecE
318	 46.99	0	337130..337678	+	182	15640350	nusG	VC0323	-	transcription antitermination protein NusG
319	 47.55	0	337809..338237	+	142	15640351	rplK	VC0324	-	50S ribosomal protein L11
320	 48.01	0	338242..338943	+	233	15640352	rplA	VC0325	-	50S ribosomal protein L1
321	 48.06	0	339213..339701	+	162	15640353	rplJ	VC0326	-	50S ribosomal protein L10
322	 45.08	0	339768..340133	+	121	15640354	rplL	VC0327	-	50S ribosomal protein L7/L12
323	 49.27	0	340272..344399	+	1375	15640355	rpoB	VC0328	-	DNA-directed RNA polymerase subunit beta
324	 50.59	0	344504..348709	+	1401	15640356	-	VC0329	-	DNA-directed RNA polymerase subunit beta'
325	 44.85	0	348820..349314	-	164	15640357	-	VC0330	-	anti-RNA polymerase sigma 70 factor
326	 50.37	0	349459..350268	+	269	15640358	nudC	VC0331	-	NADH pyrophosphatase
327	 50.56	0	350511..351590	+	359	15640359	hemE	VC0332	-	uroporphyrinogen decarboxylase
328	 45.68	0	351596..352324	+	242	15640360	-	VC0333	-	TetR family transcriptional regulator
329	 51.35	0	352411..353370	+	319	15640361	-	VC0334	-	hypothetical protein
330	 48.56	0	353367..354515	-	382	15640362	-	VC0335	-	NlpD-related protein
331	 51.08	0	354684..356216	-	510	15640363	-	VC0336	-	phosphoglyceromutase
332	 52.44	+1	356359..357300	-	313	15640364	-	VC0337	-	hypothetical protein
333	 50.24	0	357398..358834	-	478	15640365	-	VC0338	-	transporter, putative
334	 52.45	+1	359021..359878	-	285	15640366	-	VC0339	-	phosphatidylserine decarboxylase
335	 48.02	0	359871..361034	-	387	15640367	-	VC0340	-	ribosome-associated GTPase
336	 45.60	0	361157..361702	+	181	15640368	-	VC0341	-	oligoribonuclease
337	 48.38	0	363575..364684	-	369	15640369	-	VC0342	-	iron-sulfur cluster-binding protein
338	 43.56	0	364787..365353	+	188	15640370	-	VC0343	-	hypothetical protein
339	 47.48	0	365320..367065	+	581	15640371	-	VC0344	-	N-acetylmuramoyl-L-alanine amidase
340	 50.36	0	367072..369033	+	653	15640372	mutL	VC0345	-	DNA mismatch repair protein
341	 48.84	0	369030..369977	+	315	15640373	miaA	VC0346	-	tRNA delta(2)-isopentenylpyrophosphate transferase
342	 46.59	0	370149..370412	+	87	15640374	hfq	VC0347	-	RNA-binding protein Hfq
343	 48.06	0	370445..371734	+	429	15640375	-	VC0348	-	putative GTPase HflX
344	 49.49	0	371780..372967	+	395	15640376	-	VC0349	-	hflK protein
345	 46.89	0	372970..373950	+	326	15640377	-	VC0350	-	hflC protein
346	 51.21	0	373993..374199	+	68	15640378	-	VC0351	-	hypothetical protein
347	 44.74	0	374240..374467	-	75	161582027	-	VC0352	-	hypothetical protein
348	 49.29	0	374470..375453	-	327	15640380	-	VC0353	-	hypothetical protein
349	 46.92	0	375590..376369	+	259	15640381	-	VC0354	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
350	 46.20	0	376568..377290	+	240	15640382	-	VC0355	-	hypothetical protein
351	 48.99	0	377287..377682	+	131	15640383	-	VC0356	-	hypothetical protein
352	 46.78	0	377679..378035	+	118	15640384	-	VC0357	-	hypothetical protein
353	 42.39	-1	378045..378320	+	91	15640385	-	VC0358	-	hypothetical protein
354	 46.40	0	378505..378879	+	124	15640386	rpsL	VC0359	-	30S ribosomal protein S12
355	 46.28	0	378995..379465	+	156	15640387	-	VC0360	-	30S ribosomal protein S7
356	 47.73	0	379541..381637	+	698	15640388	-	VC0361	-	elongation factor G
357	 49.11	0	381760..382944	+	394	15640389	tuf	VC0362	-	elongation factor Tu
358	 44.14	0	383065..383175	-	36	15640390	-	VC0363	-	hypothetical protein
359	 43.92	0	383247..383435	+	62	15640391	-	VC0364	-	bacterioferritin-associated ferredoxin
360	 40.25	-1	383505..383981	+	158	15640392	-	VC0365	-	bacterioferritin
361	 46.88	0	384193..384561	+	122	15640393	rpsF	VC0366	-	30S ribosomal protein S6
362	 45.54	0	384569..384871	+	100	15640394	-	VC0367	-	primosomal replication protein N
363	 45.18	0	384887..385114	+	75	15640395	rpsR	VC0368	-	30S ribosomal protein S18
364	 46.00	0	385148..385597	+	149	15640396	rplI	VC0369	-	50S ribosomal protein L9
365	 43.33	0	385659..386468	-	269	15640397	-	VC0370	-	hypothetical protein
366	 50.46	0	386594..388000	+	468	15640398	-	VC0371	-	replicative DNA helicase
367	 52.39	+1	387972..389099	+	375	15640399	alr	VC0372	-	alanine racemase
368	 48.10	0	389182..389601	-	139	15640400	-	VC0373	-	hypothetical protein
369	 48.88	0	389886..391538	+	550	15640401	pgi	VC0374	-	glucose-6-phosphate isomerase
370	 40.74	-1	391571..391678	-	35	15640402	-	VC0375	-	hypothetical protein
371	 48.94	0	391741..392919	+	392	15640403	-	VC0376	-	hypothetical protein
372	 47.40	0	393036..393497	-	153	15640404	-	VC0377	-	hypothetical protein
373	 43.80	0	393507..393974	-	155	15640405	-	VC0378	-	zinc uptake regulation protein, putative
374	 50.51	0	394329..395312	+	327	15640406	-	VC0379	-	tRNA-dihydrouridine synthase A
375	 34.96	-2	395326..395448	-	40	15640407	-	VC0380	-	hypothetical protein
376	 47.00	0	395774..396439	+	221	15640408	-	VC0381	-	hypothetical protein
377	 35.67	-2	396393..396563	+	56	15640409	-	VC0382	-	hypothetical protein
378	 46.30	0	396521..396790	+	89	15640410	-	VC0383	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.