version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 273 53.17 +1 280887..282479 - 530 15640305 purH VC0276 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 274 49.75 0 282765..283166 + 133 15640306 zntR VC0277 - zinc-responsive transcriptional regulator 275 50.12 0 283327..284952 + 541 15640307 - VC0278 - DNA-binding transcriptional activator CadC 276 27.91 -2 285375..285503 + 42 15640308 - VC0279 - hypothetical protein 277 51.20 0 285652..286989 + 445 15640309 - VC0280 - lysine/cadaverine antiporter 278 50.05 0 287033..289234 + 733 15640310 - VC0281 - lysine decarboxylase, inducible 279 51.35 0 289352..291022 - 556 15640311 - VC0282 - methyl-accepting chemotaxis protein 280 55.46 +1 291257..291934 - 225 15640312 - VC0283 - hypothetical protein 281 55.12 +1 294219..294824 - 201 15640313 - VC0285 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 282 54.76 +1 294837..296213 - 458 15640314 - VC0286 - gluconate permease, putative 283 50.19 0 296367..296882 + 171 15640315 - VC0287 - thermoresistant gluconokinase 284 54.26 +1 296879..298675 + 598 161582030 - VC0288 - phosphogluconate dehydratase 285 51.85 +1 298752..299750 - 332 15640317 - VC0289 - gluconate utilization system gnt-I transcriptional repressor 286 42.76 -1 299889..300185 - 98 15640318 fis VC0290 - DNA-binding protein Fis 287 49.90 0 300209..301204 - 331 15640319 - VC0291 - NifR3/Smm1 family protein 288 40.86 -1 301185..301277 - 30 15640320 - VC0292 - hypothetical protein 289 53.60 +1 301317..302204 - 295 15640321 prmA VC0293 - ribosomal protein L11 methyltransferase 290 42.74 -1 302185..302301 - 38 15640322 - VC0294 - hypothetical protein 291 51.49 0 302413..303756 - 447 15640323 - VC0295 - acetyl-CoA carboxylase biotin carboxylase subunit 292 50.43 0 303771..304232 - 153 161582029 - VC0296 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 293 45.92 0 304289..304741 - 150 15640325 - VC0297 - 3-dehydroquinate dehydratase 294 51.33 0 305121..307070 - 649 161582028 - VC0298 - acetyl-CoA synthetase 295 50.89 0 307273..307944 - 223 15640327 - VC0299 - DNA polymerase III subunit epsilon 296 50.99 0 307911..309734 - 607 15640328 - VC0300 - hypothetical protein 297 47.83 0 309689..309895 - 68 15640329 - VC0301 - hypothetical protein 298 53.48 +1 309994..311184 + 396 15640330 - VC0302 - putative 3-phenylpropionic acid transporter 299 51.92 +1 311277..314720 + 1147 15640331 - VC0303 - sensor histidine kinase 300 50.20 0 314843..316336 - 497 15640332 - VC0304 - guanosine pentaphosphate phosphohydrolase 301 50.95 0 316344..317660 - 438 15640333 - VC0305 - ATP-dependent RNA helicase RhlB 302 48.01 0 317772..318098 + 108 15640334 - VC0306 - thioredoxin 303 47.62 0 318296..319555 + 419 15640335 rho VC0307 - transcription termination factor Rho 304 46.42 0 319654..320646 + 330 15640336 - VC0308 - hypothetical protein 305 48.75 0 320728..322569 + 613 15640337 - VC0309 - hypothetical protein 306 47.78 0 322566..322835 + 89 15640338 - VC0311 - ferredoxin 307 48.80 0 322851..323561 + 236 15640339 fre VC0312 - FMN reductase 308 43.75 0 323721..323816 + 31 15640340 - VC0313 - hypothetical protein 309 34.85 -2 323974..324171 + 65 15640341 - VC0314 - hypothetical protein 310 44.74 0 329711..331051 - 446 15640342 pssA VC0315 - phosphatidylserine synthase 311 40.52 -1 331022..331174 + 50 15640343 - VC0316 - hypothetical protein 312 45.64 0 331146..331592 - 148 15640344 - VC0317 - hypothetical protein 313 46.65 0 331605..332678 + 357 15640345 murB VC0318 - UDP-N-acetylenolpyruvoylglucosamine reductase 314 48.81 0 332675..333637 + 320 15640346 - VC0319 - biotin--protein ligase 315 43.88 0 333687..334814 - 375 15640347 - VC0320 - pantothenate kinase 316 49.03 0 335326..336510 + 394 15640348 tuf VC0321 - elongation factor Tu 317 48.48 0 336719..337114 + 131 15640349 secE VC0322 - preprotein translocase subunit SecE 318 46.99 0 337130..337678 + 182 15640350 nusG VC0323 - transcription antitermination protein NusG 319 47.55 0 337809..338237 + 142 15640351 rplK VC0324 - 50S ribosomal protein L11 320 48.01 0 338242..338943 + 233 15640352 rplA VC0325 - 50S ribosomal protein L1 321 48.06 0 339213..339701 + 162 15640353 rplJ VC0326 - 50S ribosomal protein L10 322 45.08 0 339768..340133 + 121 15640354 rplL VC0327 - 50S ribosomal protein L7/L12 323 49.27 0 340272..344399 + 1375 15640355 rpoB VC0328 - DNA-directed RNA polymerase subunit beta 324 50.59 0 344504..348709 + 1401 15640356 - VC0329 - DNA-directed RNA polymerase subunit beta' 325 44.85 0 348820..349314 - 164 15640357 - VC0330 - anti-RNA polymerase sigma 70 factor 326 50.37 0 349459..350268 + 269 15640358 nudC VC0331 - NADH pyrophosphatase 327 50.56 0 350511..351590 + 359 15640359 hemE VC0332 - uroporphyrinogen decarboxylase 328 45.68 0 351596..352324 + 242 15640360 - VC0333 - TetR family transcriptional regulator 329 51.35 0 352411..353370 + 319 15640361 - VC0334 - hypothetical protein 330 48.56 0 353367..354515 - 382 15640362 - VC0335 - NlpD-related protein 331 51.08 0 354684..356216 - 510 15640363 - VC0336 - phosphoglyceromutase 332 52.44 +1 356359..357300 - 313 15640364 - VC0337 - hypothetical protein 333 50.24 0 357398..358834 - 478 15640365 - VC0338 - transporter, putative 334 52.45 +1 359021..359878 - 285 15640366 - VC0339 - phosphatidylserine decarboxylase 335 48.02 0 359871..361034 - 387 15640367 - VC0340 - ribosome-associated GTPase 336 45.60 0 361157..361702 + 181 15640368 - VC0341 - oligoribonuclease 337 48.38 0 363575..364684 - 369 15640369 - VC0342 - iron-sulfur cluster-binding protein 338 43.56 0 364787..365353 + 188 15640370 - VC0343 - hypothetical protein 339 47.48 0 365320..367065 + 581 15640371 - VC0344 - N-acetylmuramoyl-L-alanine amidase 340 50.36 0 367072..369033 + 653 15640372 mutL VC0345 - DNA mismatch repair protein 341 48.84 0 369030..369977 + 315 15640373 miaA VC0346 - tRNA delta(2)-isopentenylpyrophosphate transferase 342 46.59 0 370149..370412 + 87 15640374 hfq VC0347 - RNA-binding protein Hfq 343 48.06 0 370445..371734 + 429 15640375 - VC0348 - putative GTPase HflX 344 49.49 0 371780..372967 + 395 15640376 - VC0349 - hflK protein 345 46.89 0 372970..373950 + 326 15640377 - VC0350 - hflC protein 346 51.21 0 373993..374199 + 68 15640378 - VC0351 - hypothetical protein 347 44.74 0 374240..374467 - 75 161582027 - VC0352 - hypothetical protein 348 49.29 0 374470..375453 - 327 15640380 - VC0353 - hypothetical protein 349 46.92 0 375590..376369 + 259 15640381 - VC0354 - peptidyl-prolyl cis-trans isomerase, FKBP-type 350 46.20 0 376568..377290 + 240 15640382 - VC0355 - hypothetical protein 351 48.99 0 377287..377682 + 131 15640383 - VC0356 - hypothetical protein 352 46.78 0 377679..378035 + 118 15640384 - VC0357 - hypothetical protein 353 42.39 -1 378045..378320 + 91 15640385 - VC0358 - hypothetical protein 354 46.40 0 378505..378879 + 124 15640386 rpsL VC0359 - 30S ribosomal protein S12 355 46.28 0 378995..379465 + 156 15640387 - VC0360 - 30S ribosomal protein S7 356 47.73 0 379541..381637 + 698 15640388 - VC0361 - elongation factor G 357 49.11 0 381760..382944 + 394 15640389 tuf VC0362 - elongation factor Tu 358 44.14 0 383065..383175 - 36 15640390 - VC0363 - hypothetical protein 359 43.92 0 383247..383435 + 62 15640391 - VC0364 - bacterioferritin-associated ferredoxin 360 40.25 -1 383505..383981 + 158 15640392 - VC0365 - bacterioferritin 361 46.88 0 384193..384561 + 122 15640393 rpsF VC0366 - 30S ribosomal protein S6 362 45.54 0 384569..384871 + 100 15640394 - VC0367 - primosomal replication protein N 363 45.18 0 384887..385114 + 75 15640395 rpsR VC0368 - 30S ribosomal protein S18 364 46.00 0 385148..385597 + 149 15640396 rplI VC0369 - 50S ribosomal protein L9 365 43.33 0 385659..386468 - 269 15640397 - VC0370 - hypothetical protein 366 50.46 0 386594..388000 + 468 15640398 - VC0371 - replicative DNA helicase 367 52.39 +1 387972..389099 + 375 15640399 alr VC0372 - alanine racemase 368 48.10 0 389182..389601 - 139 15640400 - VC0373 - hypothetical protein 369 48.88 0 389886..391538 + 550 15640401 pgi VC0374 - glucose-6-phosphate isomerase 370 40.74 -1 391571..391678 - 35 15640402 - VC0375 - hypothetical protein 371 48.94 0 391741..392919 + 392 15640403 - VC0376 - hypothetical protein 372 47.40 0 393036..393497 - 153 15640404 - VC0377 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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