IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
233	 44.48	0	239354..240403	-	349	15640265	-	VC0235	-	lipopolysaccharide biosynthesis protein, putative
234	 46.30	0	240400..241440	-	346	15640266	-	VC0236	-	ADP-heptose--LPS heptosyltransferase II
235	 35.33	-2	241437..242636	-	399	15640267	-	VC0237	-	hypothetical protein
236	 37.04	-2	242638..243204	-	188	15640268	-	VC0238	-	hexapaptide repeat-containing transferase
237	 45.23	0	243212..244984	-	590	15640269	-	VC0239	-	hypothetical protein
238	 46.14	0	245143..246087	-	314	15640270	rfaD	VC0240	-	ADP-L-glycero-D-mannoheptose-6-epimerase
239	 42.13	-1	246529..247926	+	465	15640271	-	VC0241	-	mannose-1-phosphate guanylyltransferase
240	 38.65	-2	247929..249320	+	463	15640272	-	VC0242	-	phosphomannomutase
241	 39.57	-1	249323..250444	+	373	15640273	-	VC0243	-	GDP-mannose 4,6-dehydratase
242	 40.04	-1	250455..251558	+	367	15640274	-	VC0244	-	perosamine synthase
243	 35.13	-2	251555..252946	+	463	15640275	-	VC0245	-	rfbG protein
244	 34.84	-2	252918..253712	+	264	15640276	-	VC0246	-	lipopolysaccharide/O-antigen transport protein
245	 36.40	-2	253651..254466	+	271	15640277	-	VC0247	-	lipopolysaccharide/O-antigen transport protein
246	 33.33	-2	254505..254747	+	80	15640278	-	VC0248	-	acyl carrier protein, putative
247	 37.64	-2	254753..256168	+	471	15640279	-	VC0249	-	rfbL protein
248	 42.49	-1	256177..257301	+	374	15640280	-	VC0250	-	iron-containing alcohol dehydrogenase family protein RfbM
249	 42.37	-1	257292..259769	+	825	15640281	-	VC0251	-	acyl protein synthase/acyl-CoA reductase RfbN
250	 38.98	-1	259839..260405	+	188	15640282	-	VC0252	-	acetyltransferase
251	 46.91	0	260555..260635	+	26	15640283	-	VC0253	-	IS1004 transposase
252	 32.88	-2	262098..262319	+	73	15640284	-	VC0255	-	rfbT-related protein
253	 43.19	0	262326..262670	+	114	15640285	-	VC0256	-	transposase OrfAB, subunit A
254	 44.44	0	262667..263539	+	290	15640286	-	VC0257	-	transposase OrfAB, subunit B
255	 31.87	-2	263536..264219	+	227	15640287	-	VC0258	-	rfbT protein
256	 35.36	-2	264254..265486	-	410	15640288	-	VC0259	-	lipopolysaccharide biosynthesis protein RfbV
257	 43.52	0	265374..267239	-	621	15640289	-	VC0260	-	mannosyl-transferase
258	 39.01	-1	267300..267440	-	46	15640290	-	VC0261	-	hypothetical protein
259	 45.06	0	267392..268363	+	323	15640291	-	VC0262	-	UDP-glucose 4-epimerase
260	 43.78	0	268371..268925	+	184	15640292	-	VC0263	-	galactosyl-transferase, putative
261	 55.19	+1	269068..270435	+	455	15640293	-	VC0264	-	hypothetical protein
262	 49.48	0	270697..271935	-	412	15640294	-	VC0265	-	hypothetical protein
263	 54.28	+1	271990..272562	-	190	15640295	-	VC0266	-	hypothetical protein
264	 53.25	+1	272562..273485	-	307	15640296	-	VC0267	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
265	 47.98	0	273478..274146	+	222	15640297	-	VC0268	-	hypothetical protein
266	 41.25	-1	274509..275708	+	399	15640298	-	VC0269	-	mannose-6-phosphate isomerase
267	 44.24	0	275674..276654	+	326	15640299	-	VC0270	-	ROK family protein
268	 53.07	+1	277002..278060	-	352	15640300	-	VC0271	-	hypothetical protein
269	 43.64	0	278069..278233	+	54	15640301	-	VC0272	-	hypothetical protein
270	 47.25	0	278432..278704	+	90	15640302	-	VC0273	-	DNA-binding protein HU
271	 47.76	0	278705..279439	+	244	15640303	-	VC0274	-	hypothetical protein
272	 55.19	+1	279539..280828	-	429	15640304	-	VC0275	-	phosphoribosylamine--glycine ligase
273	 53.17	+1	280887..282479	-	530	15640305	purH	VC0276	-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
274	 49.75	0	282765..283166	+	133	15640306	zntR	VC0277	-	zinc-responsive transcriptional regulator
275	 50.12	0	283327..284952	+	541	15640307	-	VC0278	-	DNA-binding transcriptional activator CadC
276	 27.91	-2	285375..285503	+	42	15640308	-	VC0279	-	hypothetical protein
277	 51.20	0	285652..286989	+	445	15640309	-	VC0280	-	lysine/cadaverine antiporter
278	 50.05	0	287033..289234	+	733	15640310	-	VC0281	-	lysine decarboxylase, inducible
279	 51.35	0	289352..291022	-	556	15640311	-	VC0282	-	methyl-accepting chemotaxis protein
280	 55.46	+1	291257..291934	-	225	15640312	-	VC0283	-	hypothetical protein
281	 55.12	+1	294219..294824	-	201	15640313	-	VC0285	-	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase
282	 54.76	+1	294837..296213	-	458	15640314	-	VC0286	-	gluconate permease, putative
283	 50.19	0	296367..296882	+	171	15640315	-	VC0287	-	thermoresistant gluconokinase
284	 54.26	+1	296879..298675	+	598	161582030	-	VC0288	-	phosphogluconate dehydratase
285	 51.85	+1	298752..299750	-	332	15640317	-	VC0289	-	gluconate utilization system gnt-I transcriptional repressor
286	 42.76	-1	299889..300185	-	98	15640318	fis	VC0290	-	DNA-binding protein Fis
287	 49.90	0	300209..301204	-	331	15640319	-	VC0291	-	NifR3/Smm1 family protein
288	 40.86	-1	301185..301277	-	30	15640320	-	VC0292	-	hypothetical protein
289	 53.60	+1	301317..302204	-	295	15640321	prmA	VC0293	-	ribosomal protein L11 methyltransferase
290	 42.74	-1	302185..302301	-	38	15640322	-	VC0294	-	hypothetical protein
291	 51.49	0	302413..303756	-	447	15640323	-	VC0295	-	acetyl-CoA carboxylase biotin carboxylase subunit
292	 50.43	0	303771..304232	-	153	161582029	-	VC0296	-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit
293	 45.92	0	304289..304741	-	150	15640325	-	VC0297	-	3-dehydroquinate dehydratase
294	 51.33	0	305121..307070	-	649	161582028	-	VC0298	-	acetyl-CoA synthetase
295	 50.89	0	307273..307944	-	223	15640327	-	VC0299	-	DNA polymerase III subunit epsilon
296	 50.99	0	307911..309734	-	607	15640328	-	VC0300	-	hypothetical protein
297	 47.83	0	309689..309895	-	68	15640329	-	VC0301	-	hypothetical protein
298	 53.48	+1	309994..311184	+	396	15640330	-	VC0302	-	putative 3-phenylpropionic acid transporter
299	 51.92	+1	311277..314720	+	1147	15640331	-	VC0303	-	sensor histidine kinase
300	 50.20	0	314843..316336	-	497	15640332	-	VC0304	-	guanosine pentaphosphate phosphohydrolase
301	 50.95	0	316344..317660	-	438	15640333	-	VC0305	-	ATP-dependent RNA helicase RhlB
302	 48.01	0	317772..318098	+	108	15640334	-	VC0306	-	thioredoxin
303	 47.62	0	318296..319555	+	419	15640335	rho	VC0307	-	transcription termination factor Rho
304	 46.42	0	319654..320646	+	330	15640336	-	VC0308	-	hypothetical protein
305	 48.75	0	320728..322569	+	613	15640337	-	VC0309	-	hypothetical protein
306	 47.78	0	322566..322835	+	89	15640338	-	VC0311	-	ferredoxin
307	 48.80	0	322851..323561	+	236	15640339	fre	VC0312	-	FMN reductase
308	 43.75	0	323721..323816	+	31	15640340	-	VC0313	-	hypothetical protein
309	 34.85	-2	323974..324171	+	65	15640341	-	VC0314	-	hypothetical protein
310	 44.74	0	329711..331051	-	446	15640342	pssA	VC0315	-	phosphatidylserine synthase
311	 40.52	-1	331022..331174	+	50	15640343	-	VC0316	-	hypothetical protein
312	 45.64	0	331146..331592	-	148	15640344	-	VC0317	-	hypothetical protein
313	 46.65	0	331605..332678	+	357	15640345	murB	VC0318	-	UDP-N-acetylenolpyruvoylglucosamine reductase
314	 48.81	0	332675..333637	+	320	15640346	-	VC0319	-	biotin--protein ligase
315	 43.88	0	333687..334814	-	375	15640347	-	VC0320	-	pantothenate kinase
316	 49.03	0	335326..336510	+	394	15640348	tuf	VC0321	-	elongation factor Tu
317	 48.48	0	336719..337114	+	131	15640349	secE	VC0322	-	preprotein translocase subunit SecE
318	 46.99	0	337130..337678	+	182	15640350	nusG	VC0323	-	transcription antitermination protein NusG
319	 47.55	0	337809..338237	+	142	15640351	rplK	VC0324	-	50S ribosomal protein L11
320	 48.01	0	338242..338943	+	233	15640352	rplA	VC0325	-	50S ribosomal protein L1
321	 48.06	0	339213..339701	+	162	15640353	rplJ	VC0326	-	50S ribosomal protein L10
322	 45.08	0	339768..340133	+	121	15640354	rplL	VC0327	-	50S ribosomal protein L7/L12
323	 49.27	0	340272..344399	+	1375	15640355	rpoB	VC0328	-	DNA-directed RNA polymerase subunit beta
324	 50.59	0	344504..348709	+	1401	15640356	-	VC0329	-	DNA-directed RNA polymerase subunit beta'
325	 44.85	0	348820..349314	-	164	15640357	-	VC0330	-	anti-RNA polymerase sigma 70 factor
326	 50.37	0	349459..350268	+	269	15640358	nudC	VC0331	-	NADH pyrophosphatase
327	 50.56	0	350511..351590	+	359	15640359	hemE	VC0332	-	uroporphyrinogen decarboxylase
328	 45.68	0	351596..352324	+	242	15640360	-	VC0333	-	TetR family transcriptional regulator
329	 51.35	0	352411..353370	+	319	15640361	-	VC0334	-	hypothetical protein
330	 48.56	0	353367..354515	-	382	15640362	-	VC0335	-	NlpD-related protein
331	 51.08	0	354684..356216	-	510	15640363	-	VC0336	-	phosphoglyceromutase
332	 52.44	+1	356359..357300	-	313	15640364	-	VC0337	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.