version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2596 48.44 0 2797815..2799290 - 491 15642622 - VC2627 - DamX-related protein 2597 50.77 0 2799345..2800445 - 366 15642623 aroB VC2628 - 3-dehydroquinate synthase 2598 47.24 0 2800458..2800982 - 174 15642624 aroK VC2629 - shikimate kinase I 2599 46.86 0 2801169..2802905 - 578 15642625 - VC2630 - fimbrial assembly protein 2600 49.13 0 2802910..2803428 - 172 15642626 - VC2631 - fimbrial assembly protein PilP, putative 2601 49.50 0 2803418..2804017 - 199 15642627 - VC2632 - fimbrial assembly protein PilO, putative 2602 47.21 0 2804001..2804591 - 196 15642628 - VC2633 - fimbrial assembly protein PilN, putative 2603 47.20 0 2804575..2805591 - 338 15642629 - VC2634 - fimbrial assembly protein PilM, putative 2604 49.60 0 2805704..2808211 + 835 15642630 - VC2635 - penicillin-binding protein 1A 2605 49.66 0 2808285..2809178 - 297 15642631 - VC2636 - DNA-binding transcriptional regulator OxyR 2606 46.91 0 2809306..2810049 + 247 15642632 - VC2637 - peroxiredoxin family protein/glutaredoxin 2607 51.27 0 2810121..2811575 + 484 15642633 - VC2638 - dihydrolipoamide dehydrogenase 2608 39.81 -1 2811572..2811679 - 35 15642634 - VC2639 - hypothetical protein 2609 46.21 0 2811801..2812064 + 87 15642635 - VC2640 - hypothetical protein 2610 50.18 0 2812315..2813691 - 458 15642636 - VC2641 - argininosuccinate lyase 2611 50.95 0 2813924..2815138 - 404 15642637 - VC2642 - argininosuccinate synthase 2612 53.61 +1 2815214..2816002 - 262 15642638 - VC2643 - acetylglutamate kinase 2613 50.60 0 2816012..2817013 - 333 161581982 argC VC2644 - N-acetyl-gamma-glutamyl-phosphate reductase 2614 50.31 0 2817169..2818305 + 378 15642640 - VC2645 - acetylornithine deacetylase 2615 50.59 0 2818512..2821142 + 876 161581981 - VC2646 - phosphoenolpyruvate carboxylase 2616 47.41 0 2821501..2822040 + 179 15642642 - VC2647 - hypothetical protein 2617 44.19 0 2821989..2822117 + 42 15642643 - VC2648 - hypothetical protein 2618 52.92 +1 2822156..2822977 - 273 15642644 cysE VC2649 - serine acetyltransferase 2619 47.76 0 2822864..2823175 + 103 15642645 - VC2650 - hypothetical protein 2620 51.79 +1 2823050..2824084 - 344 15642646 gpsA VC2651 - NAD(P)H-dependent glycerol-3-phosphate dehydrogenase 2621 48.54 0 2824217..2824387 + 56 15642647 - VC2652 - hypothetical protein 2622 49.68 0 2824274..2824738 - 154 15642648 - VC2653 - preprotein translocase subunit SecB 2623 45.29 0 2824905..2825339 - 144 15642649 - VC2654 - hypothetical protein 2624 48.67 0 2825469..2826518 - 349 15642650 - VC2655 - lysyl-tRNA synthetase 2625 49.97 0 2826752..2828560 + 602 15642651 - VC2656 - fumarate reductase flavoprotein subunit 2626 49.54 0 2828560..2829318 + 252 15642652 - VC2657 - fumarate reductase iron-sulfur subunit 2627 48.18 0 2829321..2829704 + 127 15642653 - VC2658 - fumarate reductase subunit C 2628 49.11 0 2829685..2830077 + 130 15642654 - VC2659 - fumarate reductase subunit D 2629 47.44 0 2830191..2830757 - 188 15642655 - VC2660 - elongation factor P 2630 48.88 0 2830790..2831812 + 340 15642656 - VC2661 - hypothetical protein 2631 45.66 0 2831849..2832424 - 191 15642657 - VC2662 - hypothetical protein 2632 38.10 -2 2832447..2832551 - 34 15642658 - VC2663 - hypothetical protein 2633 52.17 +1 2832620..2834254 - 544 15642659 groEL VC2664 - chaperonin GroEL 2634 44.67 0 2834308..2834598 - 96 15642660 groES VC2665 - co-chaperonin GroES 2635 50.97 0 2834958..2835575 + 205 15642661 - VC2666 - hypothetical protein 2636 52.22 +1 2835714..2836073 + 119 15642662 - VC2667 - hypothetical protein 2637 49.66 0 2836200..2836640 - 146 15642663 - VC2668 - hypothetical protein 2638 46.44 0 2836660..2837010 - 116 15642664 - VC2669 - 5-carboxymethyl-2-hydroxymuconate delta isomerase, putative 2639 50.75 0 2837230..2838027 + 265 15642665 tpiA VC2670 - triosephosphate isomerase 2640 52.13 +1 2838145..2839527 + 460 15642666 - VC2671 - hypothetical protein 2641 50.00 0 2839613..2840128 - 171 15642667 - VC2672 - ribonuclease activity regulator protein RraA 2642 49.67 0 2840203..2841120 - 305 15642668 - VC2673 - 1,4-dihydroxy-2-naphthoate octaprenyltransferase 2643 50.30 0 2841224..2842555 - 443 15642669 hslU VC2674 - ATP-dependent protease ATP-binding subunit 2644 51.43 0 2842621..2843178 - 185 15642670 - VC2675 - ATP-dependent protease peptidase subunit 2645 51.99 +1 2843315..2843866 - 183 15642671 - VC2676 - cell division protein FtsN, putative 2646 52.48 +1 2844038..2845045 - 335 15642672 - VC2677 - DNA-binding transcriptional regulator CytR 2647 52.65 +1 2845351..2847555 - 734 15642673 - VC2678 - primosome assembly protein PriA 2648 47.03 0 2847810..2848028 + 72 15642674 rpmE VC2679 - 50S ribosomal protein L31 2649 38.89 -2 2848126..2848269 + 47 15642675 - VC2680 - hypothetical protein 2650 51.25 0 2848336..2849613 + 425 15642676 - VC2681 - malate oxidoreductase, putative 2651 47.80 0 2849724..2850041 - 105 15642677 - VC2682 - transcriptional repressor protein MetJ 2652 50.39 0 2850309..2851475 + 388 15642678 - VC2683 - cystathionine gamma-synthase 2653 52.16 +1 2851488..2853899 + 803 15642679 metL VC2684 - bifunctional aspartate kinase II/homoserine dehydrogenase II 2654 50.23 0 2854186..2855073 + 295 161581980 metF VC2685 - 5,10-methylenetetrahydrofolate reductase 2655 46.91 0 2855136..2855378 - 80 15642681 - VC2686 - hypothetical protein 2656 41.90 -1 2855427..2855531 + 34 15642682 - VC2687 - hypothetical protein 2657 52.98 +1 2855699..2856706 + 335 15642683 glpX VC2688 - fructose 1,6-bisphosphatase II 2658 49.30 0 2856783..2857778 - 331 15642684 pfkA VC2689 - 6-phosphofructokinase 2659 51.49 0 2858008..2858916 - 302 15642685 fieF VC2690 - ferrous iron efflux protein F 2660 51.39 0 2859114..2859617 - 167 15642686 cpxP VC2691 - periplasmic repressor CpxP 2661 51.53 0 2859805..2860491 + 228 15642687 - VC2692 - transcriptional regulator CpxR 2662 51.11 0 2860491..2861885 + 464 15642688 cpxA VC2693 - two-component sensor protein 2663 51.27 0 2861967..2862635 + 222 15642689 - VC2694 - superoxide dismutase, Mn 2664 51.78 +1 2862688..2863164 + 158 15642690 - VC2695 - rRNA methylase 2665 52.26 +1 2863198..2863683 - 161 15642691 fxsA VC2696 - FxsA 2666 49.09 0 2863775..2864713 - 312 15642692 - VC2697 - GGDEF family protein 2667 48.28 0 2864958..2866409 + 483 15642693 aspA VC2698 - aspartate ammonia-lyase 2668 52.45 +1 2866537..2867844 + 435 161581979 - VC2699 - anaerobic C4-dicarboxylate transporter 2669 51.75 +1 2871996..2873798 + 600 15642695 dipZ VC2701 - thiol:disulfide interchange protein precursor 2670 50.00 0 2873971..2874600 + 209 15642696 - VC2702 - LuxR family transcriptional regulator 2671 51.95 +1 2874699..2876444 - 581 15642697 - VC2703 - potassium/proton antiporter 2672 45.69 0 2876823..2877089 + 88 15642698 - VC2704 - hypothetical protein 2673 51.68 0 2877283..2878803 + 506 15642699 - VC2705 - sodium/solute symporter, putative 2674 47.92 0 2878901..2879572 - 223 15642700 - VC2706 - hypothetical protein 2675 45.74 0 2879759..2879887 + 42 15642701 - VC2707 - hypothetical protein 2676 46.23 0 2879875..2880564 + 229 15642702 gmk VC2708 - guanylate kinase 2677 52.01 +1 2880672..2880944 + 90 15642703 rpoZ VC2709 - DNA-directed RNA polymerase subunit omega 2678 52.41 +1 2880976..2883093 + 705 15642704 - VC2710 - bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase 2679 53.29 +1 2883212..2885290 + 692 15642705 - VC2711 - ATP-dependent DNA helicase RecG 2680 51.07 0 2885599..2887041 + 480 15642706 - VC2712 - xanthine/uracil permease family protein 2681 51.03 0 2887066..2888382 - 438 15642707 envZ VC2713 - osmolarity sensor protein 2682 51.18 0 2888451..2889173 - 240 15642708 ompR VC2714 - osmolarity response regulator 2683 48.77 0 2889311..2889796 - 161 15642709 greB VC2715 - transcription elongation factor GreB 2684 53.88 +1 2890041..2892362 + 773 15642710 - VC2716 - hypothetical protein 2685 54.22 +1 2892454..2892951 - 165 15642711 - VC2717 - hypothetical protein 2686 54.28 +1 2893086..2893892 - 268 15642712 - VC2718 - bioH protein 2687 53.77 +1 2893783..2894643 + 286 15642713 - VC2719 - ComF-related protein 2688 51.19 0 2894731..2895318 + 195 15642714 - VC2720 - putative DNA uptake protein 2689 49.54 0 2895457..2896005 + 182 161581978 nudE VC2721 - ADP-ribose diphosphatase NudE 2690 53.09 +1 2895950..2896855 + 301 15642716 - VC2722 - cysQ protein 2691 54.15 +1 2896907..2897665 - 252 15642717 - VC2723 - general secretion pathway protein N 2692 52.89 +1 2897667..2898167 - 166 15642718 - VC2724 - cholera toxin secretion protein EpsM 2693 51.14 0 2898174..2899397 - 407 15642719 - VC2725 - general secretion pathway protein L 2694 52.23 +1 2899354..2900364 - 336 15642720 - VC2726 - general secretion pathway protein K 2695 52.25 +1 2900354..2901019 - 221 15642721 - VC2727 - general secretion pathway protein J 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0