IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2533	 50.54	0	2746119..2747501	-	460	15642559	-	VC2564	-	ATP-dependent RNA helicase DbpA
2534	 49.11	0	2747727..2748176	+	149	15642560	-	VC2565	-	elaA protein
2535	 51.60	0	2748179..2748988	+	269	15642561	-	VC2566	-	hypothetical protein
2536	 50.09	0	2748938..2749510	-	190	15642562	-	VC2567	-	hypothetical protein
2537	 50.48	0	2749721..2750350	+	209	15642563	-	VC2568	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
2538	 45.34	0	2750486..2750968	+	160	15642564	-	VC2569	-	hypothetical protein
2539	 49.10	0	2751112..2751498	-	128	15642565	rplQ	VC2570	-	50S ribosomal protein L17
2540	 47.03	0	2751525..2752517	-	330	15642566	-	VC2571	-	DNA-directed RNA polymerase subunit alpha
2541	 46.54	0	2752542..2753162	-	206	15642567	rpsD	VC2572	-	30S ribosomal protein S4
2542	 50.26	0	2753190..2753579	-	129	15642568	-	VC2573	-	30S ribosomal protein S11
2543	 47.34	0	2753599..2753955	-	118	15642569	rpsM	VC2574	-	30S ribosomal protein S13
2544	 45.61	0	2754105..2754218	-	37	15642570	rpmJ	VC2575	-	50S ribosomal protein L36
2545	 45.62	0	2754257..2755591	-	444	15642571	secY	VC2576	-	preprotein translocase subunit SecY
2546	 46.90	0	2755612..2756046	-	144	15642572	rplO	VC2577	-	50S ribosomal protein L15
2547	 41.24	-1	2756052..2756228	-	58	15642573	rpmD	VC2578	-	50S ribosomal protein L30
2548	 46.23	0	2756235..2756738	-	167	15642574	rpsE	VC2579	-	30S ribosomal protein S5
2549	 50.00	0	2756753..2757106	-	117	15642575	rplR	VC2580	-	50S ribosomal protein L18
2550	 47.75	0	2757116..2757649	-	177	15642576	rplF	VC2581	-	50S ribosomal protein L6
2551	 46.06	0	2757664..2758056	-	130	15642577	rpsH	VC2582	-	30S ribosomal protein S8
2552	 46.73	0	2758086..2758391	-	101	15642578	rpsN	VC2583	-	30S ribosomal protein S14
2553	 47.78	0	2758409..2758948	-	179	15642579	rplE	VC2584	-	50S ribosomal protein L5
2554	 41.19	-1	2758973..2759290	-	105	15642580	rplX	VC2585	-	50S ribosomal protein L24
2555	 47.31	0	2759303..2759674	-	123	15642581	rplN	VC2586	-	50S ribosomal protein L14
2556	 43.92	0	2759837..2760091	-	84	15642582	rpsQ	VC2587	-	30S ribosomal protein S17
2557	 46.35	0	2760091..2760282	-	63	15642583	rpmC	VC2588	-	50S ribosomal protein L29
2558	 47.69	0	2760282..2760692	-	136	15642584	rplP	VC2589	-	50S ribosomal protein L16
2559	 50.00	0	2760704..2761405	-	233	15642585	rpsC	VC2590	-	30S ribosomal protein S3
2560	 47.15	0	2761425..2761757	-	110	15642586	rplV	VC2591	-	50S ribosomal protein L22
2561	 45.16	0	2761768..2762046	-	92	15642587	rpsS	VC2592	-	30S ribosomal protein S19
2562	 51.39	0	2762067..2762891	-	274	15642588	rplB	VC2593	-	50S ribosomal protein L2
2563	 43.56	0	2762908..2763210	-	100	15642589	rplW	VC2594	-	50S ribosomal protein L23
2564	 46.60	0	2763207..2763809	-	200	15642590	rplD	VC2595	-	50S ribosomal protein L4
2565	 47.14	0	2763826..2764455	-	209	15642591	rplC	VC2596	-	50S ribosomal protein L3
2566	 46.79	0	2764470..2764781	-	103	15642592	rpsJ	VC2597	-	30S ribosomal protein S10
2567	 52.42	+1	2765252..2765995	-	247	15642593	-	VC2598	-	23S rRNA (guanosine-2'-O-)-methyltransferase
2568	 50.61	0	2766003..2768468	-	821	15642594	-	VC2599	-	ribonuclease R
2569	 47.83	0	2768612..2770480	+	622	15642595	-	VC2600	-	hypothetical protein
2570	 50.47	0	2770507..2771142	-	211	15642596	-	VC2601	-	sodium-type flagellar protein MotX
2571	 48.96	0	2771350..2772648	-	432	15642597	-	VC2602	-	adenylosuccinate synthetase
2572	 52.50	+1	2772776..2773756	-	326	15642598	-	VC2603	-	asparaginase, putative
2573	 52.31	+1	2773919..2774524	-	201	15642599	-	VC2604	-	peptidyl-prolyl cis-trans isomerase, FKBP-type
2574	 49.25	0	2774616..2774816	-	66	15642600	-	VC2605	-	hypothetical protein
2575	 51.80	+1	2774826..2776628	-	600	161581984	-	VC2606	-	glutathione-regulated potassium-efflux system protein KefB
2576	 51.10	0	2776609..2777199	-	196	15642602	-	VC2607	-	glutathione-regulated potassium-efflux system ancillary protein KefG
2577	 51.18	0	2777245..2779239	+	664	15642603	-	VC2608	-	ABC transporter, ATP-binding protein
2578	 46.91	0	2779240..2779725	+	161	15642604	-	VC2609	-	hypothetical protein
2579	 52.63	+1	2779722..2780711	+	329	15642605	-	VC2610	-	putative hydrolase
2580	 46.08	0	2780720..2780821	-	33	15642606	-	VC2611	-	hypothetical protein
2581	 43.81	0	2780839..2781048	+	69	15642607	-	VC2612	-	hypothetical protein
2582	 49.43	0	2781145..2782014	+	289	15642608	-	VC2613	-	phosphoribulokinase
2583	 47.24	0	2782257..2782889	+	210	15642609	-	VC2614	-	cAMP-regulatory protein
2584	 48.23	0	2782968..2783759	-	263	15642610	-	VC2615	-	hypothetical protein
2585	 54.39	+1	2783902..2785359	-	485	15642611	-	VC2616	-	succinylglutamic semialdehyde dehydrogenase
2586	 48.82	0	2785369..2786427	-	352	15642612	-	VC2617	-	arginine/ornithine succinyltransferase, putative
2587	 51.16	0	2786528..2787739	-	403	15642613	argD	VC2618	-	bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein
2588	 49.14	0	2788137..2788718	-	193	15642614	-	VC2619	-	para-aminobenzoate synthase component II
2589	 50.53	0	2788972..2790384	+	470	15642615	-	VC2620	-	hypothetical protein
2590	 50.31	0	2790458..2793067	-	869	15642616	-	VC2621	-	extracellular nuclease-related protein
2591	 48.32	0	2793337..2794110	-	257	15642617	-	VC2622	-	hypothetical protein
2592	 49.16	0	2794267..2795283	-	338	161581983	-	VC2623	-	tryptophanyl-tRNA synthetase
2593	 50.07	0	2795411..2796091	-	226	15642619	-	VC2624	-	phosphoglycolate phosphatase
2594	 50.77	0	2796111..2796821	-	236	15642620	-	VC2625	-	ribulose-phosphate 3-epimerase
2595	 48.32	0	2796912..2797745	-	277	15642621	-	VC2626	-	DNA adenine methylase
2596	 48.44	0	2797815..2799290	-	491	15642622	-	VC2627	-	DamX-related protein
2597	 50.77	0	2799345..2800445	-	366	15642623	aroB	VC2628	-	3-dehydroquinate synthase
2598	 47.24	0	2800458..2800982	-	174	15642624	aroK	VC2629	-	shikimate kinase I
2599	 46.86	0	2801169..2802905	-	578	15642625	-	VC2630	-	fimbrial assembly protein
2600	 49.13	0	2802910..2803428	-	172	15642626	-	VC2631	-	fimbrial assembly protein PilP, putative
2601	 49.50	0	2803418..2804017	-	199	15642627	-	VC2632	-	fimbrial assembly protein PilO, putative
2602	 47.21	0	2804001..2804591	-	196	15642628	-	VC2633	-	fimbrial assembly protein PilN, putative
2603	 47.20	0	2804575..2805591	-	338	15642629	-	VC2634	-	fimbrial assembly protein PilM, putative
2604	 49.60	0	2805704..2808211	+	835	15642630	-	VC2635	-	penicillin-binding protein 1A
2605	 49.66	0	2808285..2809178	-	297	15642631	-	VC2636	-	DNA-binding transcriptional regulator OxyR
2606	 46.91	0	2809306..2810049	+	247	15642632	-	VC2637	-	peroxiredoxin family protein/glutaredoxin
2607	 51.27	0	2810121..2811575	+	484	15642633	-	VC2638	-	dihydrolipoamide dehydrogenase
2608	 39.81	-1	2811572..2811679	-	35	15642634	-	VC2639	-	hypothetical protein
2609	 46.21	0	2811801..2812064	+	87	15642635	-	VC2640	-	hypothetical protein
2610	 50.18	0	2812315..2813691	-	458	15642636	-	VC2641	-	argininosuccinate lyase
2611	 50.95	0	2813924..2815138	-	404	15642637	-	VC2642	-	argininosuccinate synthase
2612	 53.61	+1	2815214..2816002	-	262	15642638	-	VC2643	-	acetylglutamate kinase
2613	 50.60	0	2816012..2817013	-	333	161581982	argC	VC2644	-	N-acetyl-gamma-glutamyl-phosphate reductase
2614	 50.31	0	2817169..2818305	+	378	15642640	-	VC2645	-	acetylornithine deacetylase
2615	 50.59	0	2818512..2821142	+	876	161581981	-	VC2646	-	phosphoenolpyruvate carboxylase
2616	 47.41	0	2821501..2822040	+	179	15642642	-	VC2647	-	hypothetical protein
2617	 44.19	0	2821989..2822117	+	42	15642643	-	VC2648	-	hypothetical protein
2618	 52.92	+1	2822156..2822977	-	273	15642644	cysE	VC2649	-	serine acetyltransferase
2619	 47.76	0	2822864..2823175	+	103	15642645	-	VC2650	-	hypothetical protein
2620	 51.79	+1	2823050..2824084	-	344	15642646	gpsA	VC2651	-	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
2621	 48.54	0	2824217..2824387	+	56	15642647	-	VC2652	-	hypothetical protein
2622	 49.68	0	2824274..2824738	-	154	15642648	-	VC2653	-	preprotein translocase subunit SecB
2623	 45.29	0	2824905..2825339	-	144	15642649	-	VC2654	-	hypothetical protein
2624	 48.67	0	2825469..2826518	-	349	15642650	-	VC2655	-	lysyl-tRNA synthetase
2625	 49.97	0	2826752..2828560	+	602	15642651	-	VC2656	-	fumarate reductase flavoprotein subunit
2626	 49.54	0	2828560..2829318	+	252	15642652	-	VC2657	-	fumarate reductase iron-sulfur subunit
2627	 48.18	0	2829321..2829704	+	127	15642653	-	VC2658	-	fumarate reductase subunit C
2628	 49.11	0	2829685..2830077	+	130	15642654	-	VC2659	-	fumarate reductase subunit D
2629	 47.44	0	2830191..2830757	-	188	15642655	-	VC2660	-	elongation factor P
2630	 48.88	0	2830790..2831812	+	340	15642656	-	VC2661	-	hypothetical protein
2631	 45.66	0	2831849..2832424	-	191	15642657	-	VC2662	-	hypothetical protein
2632	 38.10	-2	2832447..2832551	-	34	15642658	-	VC2663	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.