version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 210 52.76 +1 219397..220374 - 325 15640242 - VC0212 - lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 211 49.53 0 220385..221341 - 318 15640243 - VC0213 - lipid A biosynthesis lauroyl acyltransferase 212 48.05 0 221338..221928 - 196 161582031 slmA VC0214 - nucleoid occlusion protein 213 55.25 +1 222087..223286 - 399 15640245 - VC0215 - bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase 214 50.44 0 223454..225148 + 564 15640246 - VC0216 - methyl-accepting chemotaxis protein 215 51.26 0 225260..225934 + 224 15640247 radC VC0217 - DNA repair protein RadC 216 44.73 0 226229..226465 + 78 15640248 - VC0218 - ribosomal protein L28 217 42.86 -1 226479..226646 + 55 15640249 rpmG VC0219 - 50S ribosomal protein L33 218 49.28 0 226867..227355 + 162 15640250 - VC0220 - hypothetical protein 219 52.22 +1 227365..228174 + 269 15640251 - VC0221 - formamidopyrimidine-DNA glycosylase 220 49.09 0 228271..228765 - 164 15640252 coaD VC0222 - phosphopantetheine adenylyltransferase 221 51.45 0 228876..229913 + 345 15640253 - VC0223 - ADP-heptose--LPS heptosyltransferase II, putative 222 49.10 0 229975..230754 - 259 15640254 - VC0224 - lipopolysaccharide biosynthesis glycosyltransferase, putative 223 51.68 0 230797..231870 - 357 15640255 - VC0225 - lipopolysaccharide biosynthesis protein, putative 224 39.58 -1 231873..231968 - 31 15640256 - VC0226 - hypothetical protein 225 46.16 0 231950..232705 + 251 15640257 - VC0227 - 3-deoxy-D-manno-octulosonic-acid kinase 226 32.60 -2 232709..233668 + 319 15640258 - VC0228 - hypothetical protein 227 43.98 0 233672..234601 - 309 15640259 - VC0229 - hypothetical protein 228 46.24 0 234598..235341 - 247 15640260 - VC0230 - hypothetical protein 229 45.52 0 235338..236921 - 527 15640261 - VC0231 - hypothetical protein 230 44.09 0 236912..237292 - 126 15640262 - VC0232 - hypothetical protein 231 47.50 0 237289..238608 - 439 15640263 - VC0233 - 3-deoxy-D-manno-octulosonic-acid transferase 232 44.23 0 238569..239357 - 262 15640264 - VC0234 - hypothetical protein 233 44.48 0 239354..240403 - 349 15640265 - VC0235 - lipopolysaccharide biosynthesis protein, putative 234 46.30 0 240400..241440 - 346 15640266 - VC0236 - ADP-heptose--LPS heptosyltransferase II 235 35.33 -2 241437..242636 - 399 15640267 - VC0237 - hypothetical protein 236 37.04 -2 242638..243204 - 188 15640268 - VC0238 - hexapaptide repeat-containing transferase 237 45.23 0 243212..244984 - 590 15640269 - VC0239 - hypothetical protein 238 46.14 0 245143..246087 - 314 15640270 rfaD VC0240 - ADP-L-glycero-D-mannoheptose-6-epimerase 239 42.13 -1 246529..247926 + 465 15640271 - VC0241 - mannose-1-phosphate guanylyltransferase 240 38.65 -2 247929..249320 + 463 15640272 - VC0242 - phosphomannomutase 241 39.57 -1 249323..250444 + 373 15640273 - VC0243 - GDP-mannose 4,6-dehydratase 242 40.04 -1 250455..251558 + 367 15640274 - VC0244 - perosamine synthase 243 35.13 -2 251555..252946 + 463 15640275 - VC0245 - rfbG protein 244 34.84 -2 252918..253712 + 264 15640276 - VC0246 - lipopolysaccharide/O-antigen transport protein 245 36.40 -2 253651..254466 + 271 15640277 - VC0247 - lipopolysaccharide/O-antigen transport protein 246 33.33 -2 254505..254747 + 80 15640278 - VC0248 - acyl carrier protein, putative 247 37.64 -2 254753..256168 + 471 15640279 - VC0249 - rfbL protein 248 42.49 -1 256177..257301 + 374 15640280 - VC0250 - iron-containing alcohol dehydrogenase family protein RfbM 249 42.37 -1 257292..259769 + 825 15640281 - VC0251 - acyl protein synthase/acyl-CoA reductase RfbN 250 38.98 -1 259839..260405 + 188 15640282 - VC0252 - acetyltransferase 251 46.91 0 260555..260635 + 26 15640283 - VC0253 - IS1004 transposase 252 32.88 -2 262098..262319 + 73 15640284 - VC0255 - rfbT-related protein 253 43.19 0 262326..262670 + 114 15640285 - VC0256 - transposase OrfAB, subunit A 254 44.44 0 262667..263539 + 290 15640286 - VC0257 - transposase OrfAB, subunit B 255 31.87 -2 263536..264219 + 227 15640287 - VC0258 - rfbT protein 256 35.36 -2 264254..265486 - 410 15640288 - VC0259 - lipopolysaccharide biosynthesis protein RfbV 257 43.52 0 265374..267239 - 621 15640289 - VC0260 - mannosyl-transferase 258 39.01 -1 267300..267440 - 46 15640290 - VC0261 - hypothetical protein 259 45.06 0 267392..268363 + 323 15640291 - VC0262 - UDP-glucose 4-epimerase 260 43.78 0 268371..268925 + 184 15640292 - VC0263 - galactosyl-transferase, putative 261 55.19 +1 269068..270435 + 455 15640293 - VC0264 - hypothetical protein 262 49.48 0 270697..271935 - 412 15640294 - VC0265 - hypothetical protein 263 54.28 +1 271990..272562 - 190 15640295 - VC0266 - hypothetical protein 264 53.25 +1 272562..273485 - 307 15640296 - VC0267 - D-isomer specific 2-hydroxyacid dehydrogenase family protein 265 47.98 0 273478..274146 + 222 15640297 - VC0268 - hypothetical protein 266 41.25 -1 274509..275708 + 399 15640298 - VC0269 - mannose-6-phosphate isomerase 267 44.24 0 275674..276654 + 326 15640299 - VC0270 - ROK family protein 268 53.07 +1 277002..278060 - 352 15640300 - VC0271 - hypothetical protein 269 43.64 0 278069..278233 + 54 15640301 - VC0272 - hypothetical protein 270 47.25 0 278432..278704 + 90 15640302 - VC0273 - DNA-binding protein HU 271 47.76 0 278705..279439 + 244 15640303 - VC0274 - hypothetical protein 272 55.19 +1 279539..280828 - 429 15640304 - VC0275 - phosphoribosylamine--glycine ligase 273 53.17 +1 280887..282479 - 530 15640305 purH VC0276 - bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase 274 49.75 0 282765..283166 + 133 15640306 zntR VC0277 - zinc-responsive transcriptional regulator 275 50.12 0 283327..284952 + 541 15640307 - VC0278 - DNA-binding transcriptional activator CadC 276 27.91 -2 285375..285503 + 42 15640308 - VC0279 - hypothetical protein 277 51.20 0 285652..286989 + 445 15640309 - VC0280 - lysine/cadaverine antiporter 278 50.05 0 287033..289234 + 733 15640310 - VC0281 - lysine decarboxylase, inducible 279 51.35 0 289352..291022 - 556 15640311 - VC0282 - methyl-accepting chemotaxis protein 280 55.46 +1 291257..291934 - 225 15640312 - VC0283 - hypothetical protein 281 55.12 +1 294219..294824 - 201 15640313 - VC0285 - keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase 282 54.76 +1 294837..296213 - 458 15640314 - VC0286 - gluconate permease, putative 283 50.19 0 296367..296882 + 171 15640315 - VC0287 - thermoresistant gluconokinase 284 54.26 +1 296879..298675 + 598 161582030 - VC0288 - phosphogluconate dehydratase 285 51.85 +1 298752..299750 - 332 15640317 - VC0289 - gluconate utilization system gnt-I transcriptional repressor 286 42.76 -1 299889..300185 - 98 15640318 fis VC0290 - DNA-binding protein Fis 287 49.90 0 300209..301204 - 331 15640319 - VC0291 - NifR3/Smm1 family protein 288 40.86 -1 301185..301277 - 30 15640320 - VC0292 - hypothetical protein 289 53.60 +1 301317..302204 - 295 15640321 prmA VC0293 - ribosomal protein L11 methyltransferase 290 42.74 -1 302185..302301 - 38 15640322 - VC0294 - hypothetical protein 291 51.49 0 302413..303756 - 447 15640323 - VC0295 - acetyl-CoA carboxylase biotin carboxylase subunit 292 50.43 0 303771..304232 - 153 161582029 - VC0296 - acetyl-CoA carboxylase biotin carboxyl carrier protein subunit 293 45.92 0 304289..304741 - 150 15640325 - VC0297 - 3-dehydroquinate dehydratase 294 51.33 0 305121..307070 - 649 161582028 - VC0298 - acetyl-CoA synthetase 295 50.89 0 307273..307944 - 223 15640327 - VC0299 - DNA polymerase III subunit epsilon 296 50.99 0 307911..309734 - 607 15640328 - VC0300 - hypothetical protein 297 47.83 0 309689..309895 - 68 15640329 - VC0301 - hypothetical protein 298 53.48 +1 309994..311184 + 396 15640330 - VC0302 - putative 3-phenylpropionic acid transporter 299 51.92 +1 311277..314720 + 1147 15640331 - VC0303 - sensor histidine kinase 300 50.20 0 314843..316336 - 497 15640332 - VC0304 - guanosine pentaphosphate phosphohydrolase 301 50.95 0 316344..317660 - 438 15640333 - VC0305 - ATP-dependent RNA helicase RhlB 302 48.01 0 317772..318098 + 108 15640334 - VC0306 - thioredoxin 303 47.62 0 318296..319555 + 419 15640335 rho VC0307 - transcription termination factor Rho 304 46.42 0 319654..320646 + 330 15640336 - VC0308 - hypothetical protein 305 48.75 0 320728..322569 + 613 15640337 - VC0309 - hypothetical protein 306 47.78 0 322566..322835 + 89 15640338 - VC0311 - ferredoxin 307 48.80 0 322851..323561 + 236 15640339 fre VC0312 - FMN reductase 308 43.75 0 323721..323816 + 31 15640340 - VC0313 - hypothetical protein 309 34.85 -2 323974..324171 + 65 15640341 - VC0314 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0