version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2518 53.83 +1 2732684..2733322 + 212 15642544 - VC2549 - methionine sulfoxide reductase A 2519 49.46 0 2733404..2733955 + 183 15642545 - VC2550 - hypothetical protein 2520 50.00 0 2734173..2734478 + 101 15642546 - VC2551 - hypothetical protein 2521 48.15 0 2734527..2735255 + 242 15642547 - VC2552 - hypothetical protein 2522 50.77 0 2735337..2736053 + 238 15642548 - VC2553 - ABC transporter, ATP-binding protein, authentic frameshift 2523 51.50 0 2736044..2737309 + 421 15642549 - VC2554 - hypothetical protein 2524 47.89 0 2737362..2737883 + 173 15642550 - VC2555 - hypothetical protein 2525 50.27 0 2738194..2738559 + 121 15642551 - VC2556 - hypothetical protein 2526 50.34 0 2738505..2739092 + 195 15642552 - VC2557 - hypothetical protein 2527 53.40 +1 2739165..2739812 - 215 15642553 - VC2558 - adenylylsulfate kinase 2528 48.50 0 2739823..2741253 - 476 15642554 cysN VC2559 - sulfate adenylyltransferase subunit 1 2529 49.50 0 2741271..2742179 - 302 161581985 - VC2560 - sulfate adenylyltransferase subunit 2 2530 54.78 +1 2742282..2743181 - 299 15642556 - VC2561 - uroporphyrin-III C-methyltransferase 2531 48.97 0 2743382..2745427 + 681 15642557 cpdB VC2562 - bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein 2532 50.53 0 2745547..2746116 + 189 15642558 - VC2563 - hypothetical protein 2533 50.54 0 2746119..2747501 - 460 15642559 - VC2564 - ATP-dependent RNA helicase DbpA 2534 49.11 0 2747727..2748176 + 149 15642560 - VC2565 - elaA protein 2535 51.60 0 2748179..2748988 + 269 15642561 - VC2566 - hypothetical protein 2536 50.09 0 2748938..2749510 - 190 15642562 - VC2567 - hypothetical protein 2537 50.48 0 2749721..2750350 + 209 15642563 - VC2568 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2538 45.34 0 2750486..2750968 + 160 15642564 - VC2569 - hypothetical protein 2539 49.10 0 2751112..2751498 - 128 15642565 rplQ VC2570 - 50S ribosomal protein L17 2540 47.03 0 2751525..2752517 - 330 15642566 - VC2571 - DNA-directed RNA polymerase subunit alpha 2541 46.54 0 2752542..2753162 - 206 15642567 rpsD VC2572 - 30S ribosomal protein S4 2542 50.26 0 2753190..2753579 - 129 15642568 - VC2573 - 30S ribosomal protein S11 2543 47.34 0 2753599..2753955 - 118 15642569 rpsM VC2574 - 30S ribosomal protein S13 2544 45.61 0 2754105..2754218 - 37 15642570 rpmJ VC2575 - 50S ribosomal protein L36 2545 45.62 0 2754257..2755591 - 444 15642571 secY VC2576 - preprotein translocase subunit SecY 2546 46.90 0 2755612..2756046 - 144 15642572 rplO VC2577 - 50S ribosomal protein L15 2547 41.24 -1 2756052..2756228 - 58 15642573 rpmD VC2578 - 50S ribosomal protein L30 2548 46.23 0 2756235..2756738 - 167 15642574 rpsE VC2579 - 30S ribosomal protein S5 2549 50.00 0 2756753..2757106 - 117 15642575 rplR VC2580 - 50S ribosomal protein L18 2550 47.75 0 2757116..2757649 - 177 15642576 rplF VC2581 - 50S ribosomal protein L6 2551 46.06 0 2757664..2758056 - 130 15642577 rpsH VC2582 - 30S ribosomal protein S8 2552 46.73 0 2758086..2758391 - 101 15642578 rpsN VC2583 - 30S ribosomal protein S14 2553 47.78 0 2758409..2758948 - 179 15642579 rplE VC2584 - 50S ribosomal protein L5 2554 41.19 -1 2758973..2759290 - 105 15642580 rplX VC2585 - 50S ribosomal protein L24 2555 47.31 0 2759303..2759674 - 123 15642581 rplN VC2586 - 50S ribosomal protein L14 2556 43.92 0 2759837..2760091 - 84 15642582 rpsQ VC2587 - 30S ribosomal protein S17 2557 46.35 0 2760091..2760282 - 63 15642583 rpmC VC2588 - 50S ribosomal protein L29 2558 47.69 0 2760282..2760692 - 136 15642584 rplP VC2589 - 50S ribosomal protein L16 2559 50.00 0 2760704..2761405 - 233 15642585 rpsC VC2590 - 30S ribosomal protein S3 2560 47.15 0 2761425..2761757 - 110 15642586 rplV VC2591 - 50S ribosomal protein L22 2561 45.16 0 2761768..2762046 - 92 15642587 rpsS VC2592 - 30S ribosomal protein S19 2562 51.39 0 2762067..2762891 - 274 15642588 rplB VC2593 - 50S ribosomal protein L2 2563 43.56 0 2762908..2763210 - 100 15642589 rplW VC2594 - 50S ribosomal protein L23 2564 46.60 0 2763207..2763809 - 200 15642590 rplD VC2595 - 50S ribosomal protein L4 2565 47.14 0 2763826..2764455 - 209 15642591 rplC VC2596 - 50S ribosomal protein L3 2566 46.79 0 2764470..2764781 - 103 15642592 rpsJ VC2597 - 30S ribosomal protein S10 2567 52.42 +1 2765252..2765995 - 247 15642593 - VC2598 - 23S rRNA (guanosine-2'-O-)-methyltransferase 2568 50.61 0 2766003..2768468 - 821 15642594 - VC2599 - ribonuclease R 2569 47.83 0 2768612..2770480 + 622 15642595 - VC2600 - hypothetical protein 2570 50.47 0 2770507..2771142 - 211 15642596 - VC2601 - sodium-type flagellar protein MotX 2571 48.96 0 2771350..2772648 - 432 15642597 - VC2602 - adenylosuccinate synthetase 2572 52.50 +1 2772776..2773756 - 326 15642598 - VC2603 - asparaginase, putative 2573 52.31 +1 2773919..2774524 - 201 15642599 - VC2604 - peptidyl-prolyl cis-trans isomerase, FKBP-type 2574 49.25 0 2774616..2774816 - 66 15642600 - VC2605 - hypothetical protein 2575 51.80 +1 2774826..2776628 - 600 161581984 - VC2606 - glutathione-regulated potassium-efflux system protein KefB 2576 51.10 0 2776609..2777199 - 196 15642602 - VC2607 - glutathione-regulated potassium-efflux system ancillary protein KefG 2577 51.18 0 2777245..2779239 + 664 15642603 - VC2608 - ABC transporter, ATP-binding protein 2578 46.91 0 2779240..2779725 + 161 15642604 - VC2609 - hypothetical protein 2579 52.63 +1 2779722..2780711 + 329 15642605 - VC2610 - putative hydrolase 2580 46.08 0 2780720..2780821 - 33 15642606 - VC2611 - hypothetical protein 2581 43.81 0 2780839..2781048 + 69 15642607 - VC2612 - hypothetical protein 2582 49.43 0 2781145..2782014 + 289 15642608 - VC2613 - phosphoribulokinase 2583 47.24 0 2782257..2782889 + 210 15642609 - VC2614 - cAMP-regulatory protein 2584 48.23 0 2782968..2783759 - 263 15642610 - VC2615 - hypothetical protein 2585 54.39 +1 2783902..2785359 - 485 15642611 - VC2616 - succinylglutamic semialdehyde dehydrogenase 2586 48.82 0 2785369..2786427 - 352 15642612 - VC2617 - arginine/ornithine succinyltransferase, putative 2587 51.16 0 2786528..2787739 - 403 15642613 argD VC2618 - bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein 2588 49.14 0 2788137..2788718 - 193 15642614 - VC2619 - para-aminobenzoate synthase component II 2589 50.53 0 2788972..2790384 + 470 15642615 - VC2620 - hypothetical protein 2590 50.31 0 2790458..2793067 - 869 15642616 - VC2621 - extracellular nuclease-related protein 2591 48.32 0 2793337..2794110 - 257 15642617 - VC2622 - hypothetical protein 2592 49.16 0 2794267..2795283 - 338 161581983 - VC2623 - tryptophanyl-tRNA synthetase 2593 50.07 0 2795411..2796091 - 226 15642619 - VC2624 - phosphoglycolate phosphatase 2594 50.77 0 2796111..2796821 - 236 15642620 - VC2625 - ribulose-phosphate 3-epimerase 2595 48.32 0 2796912..2797745 - 277 15642621 - VC2626 - DNA adenine methylase 2596 48.44 0 2797815..2799290 - 491 15642622 - VC2627 - DamX-related protein 2597 50.77 0 2799345..2800445 - 366 15642623 aroB VC2628 - 3-dehydroquinate synthase 2598 47.24 0 2800458..2800982 - 174 15642624 aroK VC2629 - shikimate kinase I 2599 46.86 0 2801169..2802905 - 578 15642625 - VC2630 - fimbrial assembly protein 2600 49.13 0 2802910..2803428 - 172 15642626 - VC2631 - fimbrial assembly protein PilP, putative 2601 49.50 0 2803418..2804017 - 199 15642627 - VC2632 - fimbrial assembly protein PilO, putative 2602 47.21 0 2804001..2804591 - 196 15642628 - VC2633 - fimbrial assembly protein PilN, putative 2603 47.20 0 2804575..2805591 - 338 15642629 - VC2634 - fimbrial assembly protein PilM, putative 2604 49.60 0 2805704..2808211 + 835 15642630 - VC2635 - penicillin-binding protein 1A 2605 49.66 0 2808285..2809178 - 297 15642631 - VC2636 - DNA-binding transcriptional regulator OxyR 2606 46.91 0 2809306..2810049 + 247 15642632 - VC2637 - peroxiredoxin family protein/glutaredoxin 2607 51.27 0 2810121..2811575 + 484 15642633 - VC2638 - dihydrolipoamide dehydrogenase 2608 39.81 -1 2811572..2811679 - 35 15642634 - VC2639 - hypothetical protein 2609 46.21 0 2811801..2812064 + 87 15642635 - VC2640 - hypothetical protein 2610 50.18 0 2812315..2813691 - 458 15642636 - VC2641 - argininosuccinate lyase 2611 50.95 0 2813924..2815138 - 404 15642637 - VC2642 - argininosuccinate synthase 2612 53.61 +1 2815214..2816002 - 262 15642638 - VC2643 - acetylglutamate kinase 2613 50.60 0 2816012..2817013 - 333 161581982 argC VC2644 - N-acetyl-gamma-glutamyl-phosphate reductase 2614 50.31 0 2817169..2818305 + 378 15642640 - VC2645 - acetylornithine deacetylase 2615 50.59 0 2818512..2821142 + 876 161581981 - VC2646 - phosphoenolpyruvate carboxylase 2616 47.41 0 2821501..2822040 + 179 15642642 - VC2647 - hypothetical protein 2617 44.19 0 2821989..2822117 + 42 15642643 - VC2648 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0