IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2436	 49.61	0	2648522..2649160	-	212	15642462	-	VC2466	-	sigma-E factor negative regulatory protein RseA
2437	 44.85	0	2649174..2649746	-	190	15642463	-	VC2467	-	RNA polymerase sigma factor RpoE
2438	 40.40	-1	2650077..2650274	-	65	15642464	-	VC2468	-	hypothetical protein
2439	 50.82	0	2650206..2651858	+	550	15642465	-	VC2469	-	L-aspartate oxidase
2440	 49.66	0	2651883..2652329	-	148	15642466	-	VC2470	-	hypothetical protein
2441	 48.28	0	2652277..2652537	-	86	15642467	-	VC2471	-	hypothetical protein
2442	 51.03	0	2652690..2653661	+	323	15642468	-	VC2472	-	hypothetical protein
2443	 44.02	0	2654268..2654501	+	77	15642469	-	VC2473	-	hypothetical protein
2444	 53.17	+1	2654602..2655831	-	409	15642470	-	VC2474	-	2-octaprenyl-6-methoxyphenol hydroxylase
2445	 53.10	+1	2655843..2657051	-	402	15642471	-	VC2475	-	2-octaprenyl-6-methoxyphenyl hydroxylase
2446	 47.89	0	2657072..2657545	-	157	15642472	-	VC2476	-	hypothetical protein
2447	 46.88	0	2657551..2657646	-	31	15642473	-	VC2477	-	hypothetical protein
2448	 45.31	0	2657888..2658196	+	102	15642474	-	VC2478	-	hypothetical protein
2449	 50.77	0	2658396..2658980	+	194	15642475	-	VC2479	-	hypothetical protein
2450	 49.47	0	2659090..2659746	+	218	15642476	-	VC2480	-	ribose-5-phosphate isomerase A
2451	 49.19	0	2660000..2661229	+	409	15642477	-	VC2481	-	D-3-phosphoglycerate dehydrogenase
2452	 49.90	0	2661461..2661955	-	164	15642478	-	VC2482	-	acetolactate synthase 3 regulatory subunit
2453	 47.91	0	2661957..2663678	-	573	15642479	-	VC2483	-	acetolactate synthase 3 catalytic subunit
2454	 46.35	0	2664163..2665968	-	601	15642480	-	VC2484	-	long-chain-fatty-acid--CoA ligase, putative
2455	 47.72	0	2666145..2667110	-	321	15642481	leuO	VC2485	-	leucine transcriptional activator
2456	 40.20	-1	2667128..2667229	-	33	15642482	-	VC2486	-	hypothetical protein
2457	 43.16	-1	2667410..2668498	-	362	15642483	-	VC2487	-	hypothetical protein
2458	 47.67	0	2668495..2669031	-	178	15642484	-	VC2488	-	hypothetical protein
2459	 42.61	-1	2669158..2669793	-	211	15642485	-	VC2489	-	TetR family transcriptional regulator
2460	 48.03	0	2670176..2671726	+	516	15642486	-	VC2490	-	2-isopropylmalate synthase
2461	 51.19	0	2671838..2672929	+	363	15642487	-	VC2491	-	3-isopropylmalate dehydrogenase
2462	 51.07	0	2672987..2674390	+	467	15642488	-	VC2492	-	isopropylmalate isomerase large subunit
2463	 47.10	0	2674406..2675008	+	200	15642489	leuD	VC2493	-	isopropylmalate isomerase small subunit
2464	 42.55	-1	2675109..2675900	+	263	15642490	-	VC2494	-	hypothetical protein
2465	 35.00	-2	2681453..2681572	-	39	15642491	-	VC2495	-	hypothetical protein
2466	 37.63	-2	2681585..2681677	-	30	15642492	-	VC2496	-	hypothetical protein
2467	 43.94	0	2681920..2683173	-	417	15642493	-	VC2497	-	hypothetical protein
2468	 49.28	0	2683604..2684086	+	160	15642494	-	VC2498	-	hypothetical protein
2469	 47.06	0	2684192..2685262	-	356	15642495	-	VC2499	-	hypothetical protein
2470	 46.50	0	2685266..2686366	-	366	15642496	-	VC2500	-	hypothetical protein
2471	 50.60	0	2686560..2688071	+	503	15642497	-	VC2501	-	leucyl aminopeptidase
2472	 50.44	0	2688155..2688604	+	149	15642498	-	VC2502	-	DNA polymerase III subunit chi
2473	 50.77	0	2688698..2691559	+	953	15642499	valS	VC2503	-	valyl-tRNA synthetase
2474	 51.02	0	2691637..2692614	-	325	15642500	-	VC2504	-	D-lactate dehydrogenase
2475	 49.73	0	2692654..2693391	-	245	15642501	-	VC2505	-	ribosomal large subunit pseudouridine synthase A
2476	 51.82	+1	2693488..2696397	-	969	15642502	-	VC2506	-	ATP-dependent helicase HepA
2477	 51.13	0	2696819..2698195	+	458	15642503	-	VC2507	-	hypothetical protein
2478	 49.35	0	2698345..2699349	+	334	15642504	-	VC2508	-	ornithine carbamoyltransferase
2479	 43.75	0	2699447..2699542	+	31	15642505	-	VC2509	-	hypothetical protein
2480	 49.75	0	2699536..2700528	+	330	15642506	pyrB	VC2510	-	aspartate carbamoyltransferase catalytic subunit
2481	 47.65	0	2700540..2701007	+	155	15642507	-	VC2511	-	aspartate carbamoyltransferase regulatory subunit
2482	 50.51	0	2701112..2701501	+	129	15642508	-	VC2512	-	hypothetical protein
2483	 49.75	0	2701582..2702367	-	261	15642509	-	VC2513	-	1-acyl-sn-glycerol-3-phosphate acyltransferase
2484	 51.75	+1	2702389..2703648	-	419	15642510	-	VC2514	-	UDP-N-acetylglucosamine 1-carboxyvinyltransferase
2485	 44.31	0	2703656..2703910	-	84	15642511	-	VC2515	-	BolA/YrbA family protein
2486	 43.03	-1	2703903..2704232	-	109	15642512	-	VC2516	-	anti-sigma B factor antagonist, putative
2487	 46.88	0	2704229..2704870	-	213	15642513	-	VC2517	-	hypothetical protein
2488	 46.54	0	2704871..2705362	-	163	15642514	-	VC2518	-	hypothetical protein
2489	 53.93	+1	2705365..2706141	-	258	15642515	-	VC2519	-	hypothetical protein
2490	 50.25	0	2706146..2706949	-	267	15642516	-	VC2520	-	ABC transporter, ATP-binding protein
2491	 42.19	-1	2707077..2707268	-	63	15642517	-	VC2521	-	hypothetical protein
2492	 49.55	0	2707506..2708504	+	332	15642518	-	VC2522	-	hypothetical protein
2493	 49.64	0	2708554..2709534	+	326	15642519	-	VC2523	-	hypothetical protein
2494	 48.03	0	2709534..2710091	+	185	15642520	-	VC2524	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase
2495	 45.04	0	2710088..2710651	+	187	15642521	-	VC2525	-	hypothetical protein
2496	 45.00	0	2710587..2711126	+	179	15642522	-	VC2527	-	hypothetical protein
2497	 51.24	0	2711129..2711854	+	241	15642523	-	VC2528	-	ABC transporter, ATP-binding protein
2498	 49.80	0	2711910..2713373	+	487	15642524	-	VC2529	-	RNA polymerase factor sigma-54
2499	 40.97	-1	2713398..2713685	+	95	15642525	-	VC2530	-	sigma-54 modulation protein, putative
2500	 46.98	0	2713688..2714134	+	148	15642526	-	VC2531	-	PTS system, nitrogen regulatory IIA component
2501	 50.64	0	2714147..2715007	+	286	15642527	-	VC2532	-	hypothetical protein
2502	 51.61	0	2715016..2715294	+	92	15642528	-	VC2533	-	phosphocarrier protein NPr
2503	 53.30	+1	2715455..2716816	+	453	15642529	-	VC2534	-	magnesium transporter
2504	 50.74	0	2716888..2718231	-	447	15642530	-	VC2535	-	peptidase PmbA
2505	 50.00	0	2718330..2718911	+	193	15642531	-	VC2536	-	hypothetical protein
2506	 51.84	+1	2719014..2719748	-	244	15642532	-	VC2537	-	thiamine ABC transporter, ATP-binding protein, putative
2507	 52.73	+1	2719742..2721334	-	530	15642533	thiP	VC2538	-	thiamine transporter membrane protein
2508	 51.16	0	2721344..2722336	-	330	15642534	tbpA	VC2539	-	thiamine transporter substrate binding subunit
2509	 52.93	+1	2722206..2722598	-	130	15642535	-	VC2540	-	hypothetical protein
2510	 55.35	+1	2722598..2723233	-	211	15642536	-	VC2541	-	aromatic acid decarboxylase
2511	 50.59	0	2723240..2724595	-	451	15642537	-	VC2542	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase
2512	 43.94	0	2724584..2724847	+	87	15642538	-	VC2543	-	hypothetical protein
2513	 48.76	0	2724901..2725911	+	336	15642539	-	VC2544	-	fructose-1,6-bisphosphatase
2514	 49.34	0	2726081..2726611	+	176	15642540	-	VC2545	-	inorganic pyrophosphatase
2515	 48.28	0	2726671..2727018	-	115	15642541	-	VC2546	-	hypothetical protein
2516	 50.86	0	2727029..2730793	-	1254	15642542	-	VC2547	-	hypothetical protein
2517	 49.51	0	2730790..2732538	-	582	15642543	-	VC2548	-	hypothetical protein
2518	 53.83	+1	2732684..2733322	+	212	15642544	-	VC2549	-	methionine sulfoxide reductase A
2519	 49.46	0	2733404..2733955	+	183	15642545	-	VC2550	-	hypothetical protein
2520	 50.00	0	2734173..2734478	+	101	15642546	-	VC2551	-	hypothetical protein
2521	 48.15	0	2734527..2735255	+	242	15642547	-	VC2552	-	hypothetical protein
2522	 50.77	0	2735337..2736053	+	238	15642548	-	VC2553	-	ABC transporter, ATP-binding protein, authentic frameshift
2523	 51.50	0	2736044..2737309	+	421	15642549	-	VC2554	-	hypothetical protein
2524	 47.89	0	2737362..2737883	+	173	15642550	-	VC2555	-	hypothetical protein
2525	 50.27	0	2738194..2738559	+	121	15642551	-	VC2556	-	hypothetical protein
2526	 50.34	0	2738505..2739092	+	195	15642552	-	VC2557	-	hypothetical protein
2527	 53.40	+1	2739165..2739812	-	215	15642553	-	VC2558	-	adenylylsulfate kinase
2528	 48.50	0	2739823..2741253	-	476	15642554	cysN	VC2559	-	sulfate adenylyltransferase subunit 1
2529	 49.50	0	2741271..2742179	-	302	161581985	-	VC2560	-	sulfate adenylyltransferase subunit 2
2530	 54.78	+1	2742282..2743181	-	299	15642556	-	VC2561	-	uroporphyrin-III C-methyltransferase
2531	 48.97	0	2743382..2745427	+	681	15642557	cpdB	VC2562	-	bifunctional 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase periplasmic precursor protein
2532	 50.53	0	2745547..2746116	+	189	15642558	-	VC2563	-	hypothetical protein
2533	 50.54	0	2746119..2747501	-	460	15642559	-	VC2564	-	ATP-dependent RNA helicase DbpA
2534	 49.11	0	2747727..2748176	+	149	15642560	-	VC2565	-	elaA protein
2535	 51.60	0	2748179..2748988	+	269	15642561	-	VC2566	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.