version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2427 50.13 0 2640613..2640993 - 126 15642453 acpS VC2457 - 4'-phosphopantetheinyl transferase 2428 51.23 0 2640997..2641728 - 243 15642454 - VC2458 - pyridoxal phosphate biosynthetic protein PdxJ 2429 51.10 0 2641725..2642450 - 241 15642455 recO VC2459 - DNA repair protein RecO 2430 48.67 0 2642520..2643497 - 325 15642456 era VC2460 - GTP-binding protein Era 2431 50.15 0 2643490..2644167 - 225 15642457 rnc VC2461 - ribonuclease III 2432 49.16 0 2644199..2645095 - 298 15642458 - VC2462 - signal peptidase I 2433 50.67 0 2645187..2646980 - 597 15642459 - VC2463 - GTP-binding protein LepA 2434 51.38 0 2647093..2647563 - 156 15642460 - VC2464 - sigma-E factor regulatory protein RseC 2435 49.69 0 2647560..2648525 - 321 15642461 rseB VC2465 - periplasmic negative regulator of sigmaE 2436 49.61 0 2648522..2649160 - 212 15642462 - VC2466 - sigma-E factor negative regulatory protein RseA 2437 44.85 0 2649174..2649746 - 190 15642463 - VC2467 - RNA polymerase sigma factor RpoE 2438 40.40 -1 2650077..2650274 - 65 15642464 - VC2468 - hypothetical protein 2439 50.82 0 2650206..2651858 + 550 15642465 - VC2469 - L-aspartate oxidase 2440 49.66 0 2651883..2652329 - 148 15642466 - VC2470 - hypothetical protein 2441 48.28 0 2652277..2652537 - 86 15642467 - VC2471 - hypothetical protein 2442 51.03 0 2652690..2653661 + 323 15642468 - VC2472 - hypothetical protein 2443 44.02 0 2654268..2654501 + 77 15642469 - VC2473 - hypothetical protein 2444 53.17 +1 2654602..2655831 - 409 15642470 - VC2474 - 2-octaprenyl-6-methoxyphenol hydroxylase 2445 53.10 +1 2655843..2657051 - 402 15642471 - VC2475 - 2-octaprenyl-6-methoxyphenyl hydroxylase 2446 47.89 0 2657072..2657545 - 157 15642472 - VC2476 - hypothetical protein 2447 46.88 0 2657551..2657646 - 31 15642473 - VC2477 - hypothetical protein 2448 45.31 0 2657888..2658196 + 102 15642474 - VC2478 - hypothetical protein 2449 50.77 0 2658396..2658980 + 194 15642475 - VC2479 - hypothetical protein 2450 49.47 0 2659090..2659746 + 218 15642476 - VC2480 - ribose-5-phosphate isomerase A 2451 49.19 0 2660000..2661229 + 409 15642477 - VC2481 - D-3-phosphoglycerate dehydrogenase 2452 49.90 0 2661461..2661955 - 164 15642478 - VC2482 - acetolactate synthase 3 regulatory subunit 2453 47.91 0 2661957..2663678 - 573 15642479 - VC2483 - acetolactate synthase 3 catalytic subunit 2454 46.35 0 2664163..2665968 - 601 15642480 - VC2484 - long-chain-fatty-acid--CoA ligase, putative 2455 47.72 0 2666145..2667110 - 321 15642481 leuO VC2485 - leucine transcriptional activator 2456 40.20 -1 2667128..2667229 - 33 15642482 - VC2486 - hypothetical protein 2457 43.16 -1 2667410..2668498 - 362 15642483 - VC2487 - hypothetical protein 2458 47.67 0 2668495..2669031 - 178 15642484 - VC2488 - hypothetical protein 2459 42.61 -1 2669158..2669793 - 211 15642485 - VC2489 - TetR family transcriptional regulator 2460 48.03 0 2670176..2671726 + 516 15642486 - VC2490 - 2-isopropylmalate synthase 2461 51.19 0 2671838..2672929 + 363 15642487 - VC2491 - 3-isopropylmalate dehydrogenase 2462 51.07 0 2672987..2674390 + 467 15642488 - VC2492 - isopropylmalate isomerase large subunit 2463 47.10 0 2674406..2675008 + 200 15642489 leuD VC2493 - isopropylmalate isomerase small subunit 2464 42.55 -1 2675109..2675900 + 263 15642490 - VC2494 - hypothetical protein 2465 35.00 -2 2681453..2681572 - 39 15642491 - VC2495 - hypothetical protein 2466 37.63 -2 2681585..2681677 - 30 15642492 - VC2496 - hypothetical protein 2467 43.94 0 2681920..2683173 - 417 15642493 - VC2497 - hypothetical protein 2468 49.28 0 2683604..2684086 + 160 15642494 - VC2498 - hypothetical protein 2469 47.06 0 2684192..2685262 - 356 15642495 - VC2499 - hypothetical protein 2470 46.50 0 2685266..2686366 - 366 15642496 - VC2500 - hypothetical protein 2471 50.60 0 2686560..2688071 + 503 15642497 - VC2501 - leucyl aminopeptidase 2472 50.44 0 2688155..2688604 + 149 15642498 - VC2502 - DNA polymerase III subunit chi 2473 50.77 0 2688698..2691559 + 953 15642499 valS VC2503 - valyl-tRNA synthetase 2474 51.02 0 2691637..2692614 - 325 15642500 - VC2504 - D-lactate dehydrogenase 2475 49.73 0 2692654..2693391 - 245 15642501 - VC2505 - ribosomal large subunit pseudouridine synthase A 2476 51.82 +1 2693488..2696397 - 969 15642502 - VC2506 - ATP-dependent helicase HepA 2477 51.13 0 2696819..2698195 + 458 15642503 - VC2507 - hypothetical protein 2478 49.35 0 2698345..2699349 + 334 15642504 - VC2508 - ornithine carbamoyltransferase 2479 43.75 0 2699447..2699542 + 31 15642505 - VC2509 - hypothetical protein 2480 49.75 0 2699536..2700528 + 330 15642506 pyrB VC2510 - aspartate carbamoyltransferase catalytic subunit 2481 47.65 0 2700540..2701007 + 155 15642507 - VC2511 - aspartate carbamoyltransferase regulatory subunit 2482 50.51 0 2701112..2701501 + 129 15642508 - VC2512 - hypothetical protein 2483 49.75 0 2701582..2702367 - 261 15642509 - VC2513 - 1-acyl-sn-glycerol-3-phosphate acyltransferase 2484 51.75 +1 2702389..2703648 - 419 15642510 - VC2514 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase 2485 44.31 0 2703656..2703910 - 84 15642511 - VC2515 - BolA/YrbA family protein 2486 43.03 -1 2703903..2704232 - 109 15642512 - VC2516 - anti-sigma B factor antagonist, putative 2487 46.88 0 2704229..2704870 - 213 15642513 - VC2517 - hypothetical protein 2488 46.54 0 2704871..2705362 - 163 15642514 - VC2518 - hypothetical protein 2489 53.93 +1 2705365..2706141 - 258 15642515 - VC2519 - hypothetical protein 2490 50.25 0 2706146..2706949 - 267 15642516 - VC2520 - ABC transporter, ATP-binding protein 2491 42.19 -1 2707077..2707268 - 63 15642517 - VC2521 - hypothetical protein 2492 49.55 0 2707506..2708504 + 332 15642518 - VC2522 - hypothetical protein 2493 49.64 0 2708554..2709534 + 326 15642519 - VC2523 - hypothetical protein 2494 48.03 0 2709534..2710091 + 185 15642520 - VC2524 - 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase 2495 45.04 0 2710088..2710651 + 187 15642521 - VC2525 - hypothetical protein 2496 45.00 0 2710587..2711126 + 179 15642522 - VC2527 - hypothetical protein 2497 51.24 0 2711129..2711854 + 241 15642523 - VC2528 - ABC transporter, ATP-binding protein 2498 49.80 0 2711910..2713373 + 487 15642524 - VC2529 - RNA polymerase factor sigma-54 2499 40.97 -1 2713398..2713685 + 95 15642525 - VC2530 - sigma-54 modulation protein, putative 2500 46.98 0 2713688..2714134 + 148 15642526 - VC2531 - PTS system, nitrogen regulatory IIA component 2501 50.64 0 2714147..2715007 + 286 15642527 - VC2532 - hypothetical protein 2502 51.61 0 2715016..2715294 + 92 15642528 - VC2533 - phosphocarrier protein NPr 2503 53.30 +1 2715455..2716816 + 453 15642529 - VC2534 - magnesium transporter 2504 50.74 0 2716888..2718231 - 447 15642530 - VC2535 - peptidase PmbA 2505 50.00 0 2718330..2718911 + 193 15642531 - VC2536 - hypothetical protein 2506 51.84 +1 2719014..2719748 - 244 15642532 - VC2537 - thiamine ABC transporter, ATP-binding protein, putative 2507 52.73 +1 2719742..2721334 - 530 15642533 thiP VC2538 - thiamine transporter membrane protein 2508 51.16 0 2721344..2722336 - 330 15642534 tbpA VC2539 - thiamine transporter substrate binding subunit 2509 52.93 +1 2722206..2722598 - 130 15642535 - VC2540 - hypothetical protein 2510 55.35 +1 2722598..2723233 - 211 15642536 - VC2541 - aromatic acid decarboxylase 2511 50.59 0 2723240..2724595 - 451 15642537 - VC2542 - UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase 2512 43.94 0 2724584..2724847 + 87 15642538 - VC2543 - hypothetical protein 2513 48.76 0 2724901..2725911 + 336 15642539 - VC2544 - fructose-1,6-bisphosphatase 2514 49.34 0 2726081..2726611 + 176 15642540 - VC2545 - inorganic pyrophosphatase 2515 48.28 0 2726671..2727018 - 115 15642541 - VC2546 - hypothetical protein 2516 50.86 0 2727029..2730793 - 1254 15642542 - VC2547 - hypothetical protein 2517 49.51 0 2730790..2732538 - 582 15642543 - VC2548 - hypothetical protein 2518 53.83 +1 2732684..2733322 + 212 15642544 - VC2549 - methionine sulfoxide reductase A 2519 49.46 0 2733404..2733955 + 183 15642545 - VC2550 - hypothetical protein 2520 50.00 0 2734173..2734478 + 101 15642546 - VC2551 - hypothetical protein 2521 48.15 0 2734527..2735255 + 242 15642547 - VC2552 - hypothetical protein 2522 50.77 0 2735337..2736053 + 238 15642548 - VC2553 - ABC transporter, ATP-binding protein, authentic frameshift 2523 51.50 0 2736044..2737309 + 421 15642549 - VC2554 - hypothetical protein 2524 47.89 0 2737362..2737883 + 173 15642550 - VC2555 - hypothetical protein 2525 50.27 0 2738194..2738559 + 121 15642551 - VC2556 - hypothetical protein 2526 50.34 0 2738505..2739092 + 195 15642552 - VC2557 - hypothetical protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0