IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2382	 38.52	-2	2581198..2581332	+	44	15642408	-	VC2411	-	hypothetical protein
2383	 49.44	0	2581292..2582719	-	475	15642409	-	VC2412	-	dihydrolipoamide dehydrogenase
2384	 52.20	+1	2582987..2584894	-	635	15642410	aceF	VC2413	-	dihydrolipoamide acetyltransferase
2385	 50.66	0	2584895..2587555	-	886	15642411	aceE	VC2414	-	pyruvate dehydrogenase subunit E1
2386	 49.81	0	2587605..2588375	-	256	15642412	pdhR	VC2415	-	transcriptional regulator PdhR
2387	 46.09	0	2588859..2590763	+	634	15642413	-	VC2416	-	2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative
2388	 51.49	0	2590808..2592547	-	579	161581988	-	VC2417	-	ssDNA exonuclease RecJ
2389	 50.60	0	2592606..2593358	-	250	15642415	-	VC2418	-	thiol:disulfide interchange protein DsbC
2390	 50.50	0	2593375..2594283	-	302	15642416	xerD	VC2419	-	site-specific tyrosine recombinase XerD
2391	 49.33	0	2594421..2594939	+	172	161581987	-	VC2420	-	flavodoxin FldB
2392	 53.85	+1	2595217..2595762	-	181	15642418	-	VC2421	-	N-acetyl-anhydromuranmyl-L-alanine amidase
2393	 54.32	+1	2596058..2596948	+	296	15642419	-	VC2422	-	quinolinate phosphoribosyltransferase
2394	 39.88	-1	2597151..2597654	+	167	15642420	-	VC2423	-	fimbrial protein
2395	 52.81	+1	2597654..2599342	+	562	15642421	-	VC2424	-	type IV pilus assembly protein PilB
2396	 49.06	0	2599385..2600611	+	408	15642422	-	VC2425	-	type IV pilin biogenesis protein PilC
2397	 51.60	0	2600669..2601544	+	291	15642423	-	VC2426	-	leader peptidase PilD
2398	 50.31	0	2601508..2602149	+	213	15642424	coaE	VC2427	-	dephospho-CoA kinase
2399	 49.53	0	2602181..2602921	+	246	15642425	-	VC2428	-	hypothetical protein
2400	 49.49	0	2603063..2603260	+	65	15642426	-	VC2429	-	zinc-binding protein
2401	 52.14	+1	2603309..2605594	-	761	15642427	-	VC2430	-	DNA topoisomerase IV subunit A
2402	 52.74	+1	2605598..2607478	-	626	15642428	-	VC2431	-	DNA topoisomerase IV subunit B
2403	 49.32	0	2607807..2608394	-	195	15642429	-	VC2432	-	esterase YqiA
2404	 51.04	0	2608396..2609214	-	272	15642430	-	VC2433	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2405	 47.65	0	2609239..2609685	-	148	15642431	-	VC2434	-	hypothetical protein
2406	 46.73	0	2609692..2610318	-	208	15642432	-	VC2435	-	MutT/nudix family protein
2407	 48.75	0	2610550..2611866	+	438	15642433	tolC	VC2436	-	outer membrane channel protein
2408	 51.74	+1	2613465..2616311	-	948	15642434	-	VC2438	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2409	 50.08	0	2616435..2617736	-	433	15642435	-	VC2439	-	methyl-accepting chemotaxis protein
2410	 49.54	0	2618176..2619693	-	505	15642436	-	VC2440	-	hypothetical protein
2411	 46.00	0	2619893..2620579	+	228	15642437	-	VC2441	-	hypothetical protein
2412	 49.69	0	2620683..2621984	+	433	15642438	-	VC2442	-	pho4 family protein
2413	 47.95	0	2622151..2622759	+	202	15642439	-	VC2443	-	hypothetical protein
2414	 49.81	0	2622851..2623621	-	256	15642440	-	VC2444	-	general secretion pathway protein B, putative
2415	 52.01	+1	2623621..2625210	-	529	15642441	-	VC2445	-	general secretion pathway protein A
2416	 54.29	+1	2625303..2626514	+	403	15642442	cca	VC2446	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2417	 48.00	0	2626616..2627917	-	433	15642443	eno	VC2447	-	phosphopyruvate hydratase
2418	 49.57	0	2627996..2629633	-	545	15642444	-	VC2448	-	CTP synthetase
2419	 35.46	-2	2629719..2629859	+	46	15642445	-	VC2449	-	hypothetical protein
2420	 47.92	0	2629908..2630723	-	271	161581986	mazG	VC2450	-	nucleoside triphosphate pyrophosphohydrolase
2421	 52.10	+1	2630823..2633039	-	738	15642447	-	VC2451	-	GTP pyrophosphokinase
2422	 50.42	0	2633103..2634425	-	440	15642448	rumA	VC2452	-	23S rRNA 5-methyluridine methyltransferase
2423	 50.61	0	2634597..2637380	+	927	15642449	-	VC2453	-	hybrid sensory histidine kinase BarA
2424	 47.49	0	2637368..2638660	-	430	15642450	-	VC2454	-	GGDEF family protein
2425	 47.45	0	2638653..2639063	-	136	15642451	-	VC2455	-	hypothetical protein
2426	 49.18	0	2639073..2640410	-	445	15642452	-	VC2456	-	hypothetical protein
2427	 50.13	0	2640613..2640993	-	126	15642453	acpS	VC2457	-	4'-phosphopantetheinyl transferase
2428	 51.23	0	2640997..2641728	-	243	15642454	-	VC2458	-	pyridoxal phosphate biosynthetic protein PdxJ
2429	 51.10	0	2641725..2642450	-	241	15642455	recO	VC2459	-	DNA repair protein RecO
2430	 48.67	0	2642520..2643497	-	325	15642456	era	VC2460	-	GTP-binding protein Era
2431	 50.15	0	2643490..2644167	-	225	15642457	rnc	VC2461	-	ribonuclease III
2432	 49.16	0	2644199..2645095	-	298	15642458	-	VC2462	-	signal peptidase I
2433	 50.67	0	2645187..2646980	-	597	15642459	-	VC2463	-	GTP-binding protein LepA
2434	 51.38	0	2647093..2647563	-	156	15642460	-	VC2464	-	sigma-E factor regulatory protein RseC
2435	 49.69	0	2647560..2648525	-	321	15642461	rseB	VC2465	-	periplasmic negative regulator of sigmaE
2436	 49.61	0	2648522..2649160	-	212	15642462	-	VC2466	-	sigma-E factor negative regulatory protein RseA
2437	 44.85	0	2649174..2649746	-	190	15642463	-	VC2467	-	RNA polymerase sigma factor RpoE
2438	 40.40	-1	2650077..2650274	-	65	15642464	-	VC2468	-	hypothetical protein
2439	 50.82	0	2650206..2651858	+	550	15642465	-	VC2469	-	L-aspartate oxidase
2440	 49.66	0	2651883..2652329	-	148	15642466	-	VC2470	-	hypothetical protein
2441	 48.28	0	2652277..2652537	-	86	15642467	-	VC2471	-	hypothetical protein
2442	 51.03	0	2652690..2653661	+	323	15642468	-	VC2472	-	hypothetical protein
2443	 44.02	0	2654268..2654501	+	77	15642469	-	VC2473	-	hypothetical protein
2444	 53.17	+1	2654602..2655831	-	409	15642470	-	VC2474	-	2-octaprenyl-6-methoxyphenol hydroxylase
2445	 53.10	+1	2655843..2657051	-	402	15642471	-	VC2475	-	2-octaprenyl-6-methoxyphenyl hydroxylase
2446	 47.89	0	2657072..2657545	-	157	15642472	-	VC2476	-	hypothetical protein
2447	 46.88	0	2657551..2657646	-	31	15642473	-	VC2477	-	hypothetical protein
2448	 45.31	0	2657888..2658196	+	102	15642474	-	VC2478	-	hypothetical protein
2449	 50.77	0	2658396..2658980	+	194	15642475	-	VC2479	-	hypothetical protein
2450	 49.47	0	2659090..2659746	+	218	15642476	-	VC2480	-	ribose-5-phosphate isomerase A
2451	 49.19	0	2660000..2661229	+	409	15642477	-	VC2481	-	D-3-phosphoglycerate dehydrogenase
2452	 49.90	0	2661461..2661955	-	164	15642478	-	VC2482	-	acetolactate synthase 3 regulatory subunit
2453	 47.91	0	2661957..2663678	-	573	15642479	-	VC2483	-	acetolactate synthase 3 catalytic subunit
2454	 46.35	0	2664163..2665968	-	601	15642480	-	VC2484	-	long-chain-fatty-acid--CoA ligase, putative
2455	 47.72	0	2666145..2667110	-	321	15642481	leuO	VC2485	-	leucine transcriptional activator
2456	 40.20	-1	2667128..2667229	-	33	15642482	-	VC2486	-	hypothetical protein
2457	 43.16	-1	2667410..2668498	-	362	15642483	-	VC2487	-	hypothetical protein
2458	 47.67	0	2668495..2669031	-	178	15642484	-	VC2488	-	hypothetical protein
2459	 42.61	-1	2669158..2669793	-	211	15642485	-	VC2489	-	TetR family transcriptional regulator
2460	 48.03	0	2670176..2671726	+	516	15642486	-	VC2490	-	2-isopropylmalate synthase
2461	 51.19	0	2671838..2672929	+	363	15642487	-	VC2491	-	3-isopropylmalate dehydrogenase
2462	 51.07	0	2672987..2674390	+	467	15642488	-	VC2492	-	isopropylmalate isomerase large subunit
2463	 47.10	0	2674406..2675008	+	200	15642489	leuD	VC2493	-	isopropylmalate isomerase small subunit
2464	 42.55	-1	2675109..2675900	+	263	15642490	-	VC2494	-	hypothetical protein
2465	 35.00	-2	2681453..2681572	-	39	15642491	-	VC2495	-	hypothetical protein
2466	 37.63	-2	2681585..2681677	-	30	15642492	-	VC2496	-	hypothetical protein
2467	 43.94	0	2681920..2683173	-	417	15642493	-	VC2497	-	hypothetical protein
2468	 49.28	0	2683604..2684086	+	160	15642494	-	VC2498	-	hypothetical protein
2469	 47.06	0	2684192..2685262	-	356	15642495	-	VC2499	-	hypothetical protein
2470	 46.50	0	2685266..2686366	-	366	15642496	-	VC2500	-	hypothetical protein
2471	 50.60	0	2686560..2688071	+	503	15642497	-	VC2501	-	leucyl aminopeptidase
2472	 50.44	0	2688155..2688604	+	149	15642498	-	VC2502	-	DNA polymerase III subunit chi
2473	 50.77	0	2688698..2691559	+	953	15642499	valS	VC2503	-	valyl-tRNA synthetase
2474	 51.02	0	2691637..2692614	-	325	15642500	-	VC2504	-	D-lactate dehydrogenase
2475	 49.73	0	2692654..2693391	-	245	15642501	-	VC2505	-	ribosomal large subunit pseudouridine synthase A
2476	 51.82	+1	2693488..2696397	-	969	15642502	-	VC2506	-	ATP-dependent helicase HepA
2477	 51.13	0	2696819..2698195	+	458	15642503	-	VC2507	-	hypothetical protein
2478	 49.35	0	2698345..2699349	+	334	15642504	-	VC2508	-	ornithine carbamoyltransferase
2479	 43.75	0	2699447..2699542	+	31	15642505	-	VC2509	-	hypothetical protein
2480	 49.75	0	2699536..2700528	+	330	15642506	pyrB	VC2510	-	aspartate carbamoyltransferase catalytic subunit
2481	 47.65	0	2700540..2701007	+	155	15642507	-	VC2511	-	aspartate carbamoyltransferase regulatory subunit
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.