IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2342	 50.05	0	2529596..2530546	-	316	15642368	-	VC2371	-	hypothetical protein
2343	 31.67	-2	2530568..2530687	-	39	15642369	-	VC2372	-	hypothetical protein
2344	 51.99	+1	2531065..2535657	+	1530	15642370	-	VC2373	-	glutamate synthase, large subunit
2345	 52.38	+1	2535658..2537127	+	489	15642371	gltD	VC2374	-	glutamate synthase subunit beta
2346	 43.24	0	2537161..2537271	+	36	15642372	-	VC2375	-	hypothetical protein
2347	 53.00	+1	2537655..2542118	+	1487	15642373	gltB	VC2376	-	glutamate synthase subunit alpha
2348	 52.61	+1	2542134..2543549	+	471	15642374	gltD	VC2377	-	glutamate synthase subunit beta
2349	 50.57	0	2543736..2544170	+	144	15642375	-	VC2378	-	hypothetical protein
2350	 49.86	0	2544258..2544953	+	231	15642376	-	VC2379	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2351	 52.10	+1	2544966..2545919	+	317	15642377	-	VC2380	-	adenosylcobinamide-phosphate synthase
2352	 50.78	0	2545920..2546750	+	276	15642378	-	VC2381	-	hypothetical protein
2353	 52.08	+1	2546734..2547453	+	239	15642379	-	VC2382	-	hypothetical protein
2354	 51.57	0	2547605..2548465	+	286	15642380	-	VC2383	-	LysR family transcriptional regulator
2355	 51.65	0	2548395..2549180	-	261	15642381	-	VC2384	-	hypothetical protein
2356	 31.89	-2	2549642..2550613	+	323	15642382	-	VC2385	-	RNA-directed DNA polymerase
2357	 30.68	-2	2550614..2552236	+	540	15642383	-	VC2386	-	hypothetical protein
2358	 30.10	-2	2552249..2552866	+	205	15642384	-	VC2387	-	hypothetical protein
2359	 48.24	0	2553477..2553959	+	160	15642385	-	VC2388	-	hypothetical protein
2360	 51.81	+1	2554049..2557279	-	1076	15642386	carB	VC2389	-	carbamoyl phosphate synthase large subunit
2361	 50.35	0	2557296..2558435	-	379	15642387	-	VC2390	-	carbamoyl phosphate synthase small subunit
2362	 50.62	0	2558918..2559727	-	269	15642388	-	VC2391	-	dihydrodipicolinate reductase
2363	 49.12	0	2559842..2560240	-	132	15642389	-	VC2392	-	mutator MutT protein
2364	 43.45	0	2560226..2560393	+	55	15642390	-	VC2393	-	hypothetical protein
2365	 48.97	0	2560390..2563101	-	903	15642391	secA	VC2394	-	preprotein translocase subunit SecA
2366	 48.73	0	2563455..2563928	+	157	15642392	-	VC2395	-	hypothetical protein
2367	 47.17	0	2564032..2564949	-	305	15642393	lpxC	VC2396	-	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase
2368	 49.29	0	2565047..2566243	-	398	15642394	-	VC2397	-	cell division protein FtsZ
2369	 48.61	0	2566274..2567536	-	420	15642395	ftsA	VC2398	-	cell division protein FtsA
2370	 41.76	-1	2567529..2568311	-	260	15642396	-	VC2399	-	cell division protein FtsQ
2371	 50.69	0	2568493..2570013	-	506	15642397	murC	VC2400	-	UDP-N-acetylmuramate--L-alanine ligase
2372	 52.86	+1	2569967..2571031	-	354	15642398	murG	VC2401	-	N-acetylglucosaminyl transferase
2373	 48.29	0	2571015..2572211	-	398	15642399	-	VC2402	-	cell division protein FtsW
2374	 50.41	0	2572228..2573562	-	444	161581989	murD	VC2403	-	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase
2375	 49.77	0	2573574..2574656	-	360	15642401	mraY	VC2404	-	phospho-N-acetylmuramoyl-pentapeptide-transferase
2376	 50.66	0	2574653..2576014	-	453	15642402	-	VC2405	-	UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase
2377	 52.76	+1	2576011..2577549	-	512	15642403	murE	VC2406	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase
2378	 51.46	0	2577515..2579257	-	580	15642404	-	VC2407	-	penicillin-binding protein 3
2379	 48.60	0	2579254..2579574	-	106	15642405	-	VC2408	-	cell division protein FtsL
2380	 50.26	0	2579584..2580534	-	316	15642406	mraW	VC2409	-	S-adenosyl-methyltransferase MraW
2381	 50.98	0	2581102..2581203	-	33	15642407	-	VC2410	-	hypothetical protein
2382	 38.52	-2	2581198..2581332	+	44	15642408	-	VC2411	-	hypothetical protein
2383	 49.44	0	2581292..2582719	-	475	15642409	-	VC2412	-	dihydrolipoamide dehydrogenase
2384	 52.20	+1	2582987..2584894	-	635	15642410	aceF	VC2413	-	dihydrolipoamide acetyltransferase
2385	 50.66	0	2584895..2587555	-	886	15642411	aceE	VC2414	-	pyruvate dehydrogenase subunit E1
2386	 49.81	0	2587605..2588375	-	256	15642412	pdhR	VC2415	-	transcriptional regulator PdhR
2387	 46.09	0	2588859..2590763	+	634	15642413	-	VC2416	-	2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative
2388	 51.49	0	2590808..2592547	-	579	161581988	-	VC2417	-	ssDNA exonuclease RecJ
2389	 50.60	0	2592606..2593358	-	250	15642415	-	VC2418	-	thiol:disulfide interchange protein DsbC
2390	 50.50	0	2593375..2594283	-	302	15642416	xerD	VC2419	-	site-specific tyrosine recombinase XerD
2391	 49.33	0	2594421..2594939	+	172	161581987	-	VC2420	-	flavodoxin FldB
2392	 53.85	+1	2595217..2595762	-	181	15642418	-	VC2421	-	N-acetyl-anhydromuranmyl-L-alanine amidase
2393	 54.32	+1	2596058..2596948	+	296	15642419	-	VC2422	-	quinolinate phosphoribosyltransferase
2394	 39.88	-1	2597151..2597654	+	167	15642420	-	VC2423	-	fimbrial protein
2395	 52.81	+1	2597654..2599342	+	562	15642421	-	VC2424	-	type IV pilus assembly protein PilB
2396	 49.06	0	2599385..2600611	+	408	15642422	-	VC2425	-	type IV pilin biogenesis protein PilC
2397	 51.60	0	2600669..2601544	+	291	15642423	-	VC2426	-	leader peptidase PilD
2398	 50.31	0	2601508..2602149	+	213	15642424	coaE	VC2427	-	dephospho-CoA kinase
2399	 49.53	0	2602181..2602921	+	246	15642425	-	VC2428	-	hypothetical protein
2400	 49.49	0	2603063..2603260	+	65	15642426	-	VC2429	-	zinc-binding protein
2401	 52.14	+1	2603309..2605594	-	761	15642427	-	VC2430	-	DNA topoisomerase IV subunit A
2402	 52.74	+1	2605598..2607478	-	626	15642428	-	VC2431	-	DNA topoisomerase IV subunit B
2403	 49.32	0	2607807..2608394	-	195	15642429	-	VC2432	-	esterase YqiA
2404	 51.04	0	2608396..2609214	-	272	15642430	-	VC2433	-	cyclic 3',5'-adenosine monophosphate phosphodiesterase
2405	 47.65	0	2609239..2609685	-	148	15642431	-	VC2434	-	hypothetical protein
2406	 46.73	0	2609692..2610318	-	208	15642432	-	VC2435	-	MutT/nudix family protein
2407	 48.75	0	2610550..2611866	+	438	15642433	tolC	VC2436	-	outer membrane channel protein
2408	 51.74	+1	2613465..2616311	-	948	15642434	-	VC2438	-	bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase
2409	 50.08	0	2616435..2617736	-	433	15642435	-	VC2439	-	methyl-accepting chemotaxis protein
2410	 49.54	0	2618176..2619693	-	505	15642436	-	VC2440	-	hypothetical protein
2411	 46.00	0	2619893..2620579	+	228	15642437	-	VC2441	-	hypothetical protein
2412	 49.69	0	2620683..2621984	+	433	15642438	-	VC2442	-	pho4 family protein
2413	 47.95	0	2622151..2622759	+	202	15642439	-	VC2443	-	hypothetical protein
2414	 49.81	0	2622851..2623621	-	256	15642440	-	VC2444	-	general secretion pathway protein B, putative
2415	 52.01	+1	2623621..2625210	-	529	15642441	-	VC2445	-	general secretion pathway protein A
2416	 54.29	+1	2625303..2626514	+	403	15642442	cca	VC2446	-	multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase
2417	 48.00	0	2626616..2627917	-	433	15642443	eno	VC2447	-	phosphopyruvate hydratase
2418	 49.57	0	2627996..2629633	-	545	15642444	-	VC2448	-	CTP synthetase
2419	 35.46	-2	2629719..2629859	+	46	15642445	-	VC2449	-	hypothetical protein
2420	 47.92	0	2629908..2630723	-	271	161581986	mazG	VC2450	-	nucleoside triphosphate pyrophosphohydrolase
2421	 52.10	+1	2630823..2633039	-	738	15642447	-	VC2451	-	GTP pyrophosphokinase
2422	 50.42	0	2633103..2634425	-	440	15642448	rumA	VC2452	-	23S rRNA 5-methyluridine methyltransferase
2423	 50.61	0	2634597..2637380	+	927	15642449	-	VC2453	-	hybrid sensory histidine kinase BarA
2424	 47.49	0	2637368..2638660	-	430	15642450	-	VC2454	-	GGDEF family protein
2425	 47.45	0	2638653..2639063	-	136	15642451	-	VC2455	-	hypothetical protein
2426	 49.18	0	2639073..2640410	-	445	15642452	-	VC2456	-	hypothetical protein
2427	 50.13	0	2640613..2640993	-	126	15642453	acpS	VC2457	-	4'-phosphopantetheinyl transferase
2428	 51.23	0	2640997..2641728	-	243	15642454	-	VC2458	-	pyridoxal phosphate biosynthetic protein PdxJ
2429	 51.10	0	2641725..2642450	-	241	15642455	recO	VC2459	-	DNA repair protein RecO
2430	 48.67	0	2642520..2643497	-	325	15642456	era	VC2460	-	GTP-binding protein Era
2431	 50.15	0	2643490..2644167	-	225	15642457	rnc	VC2461	-	ribonuclease III
2432	 49.16	0	2644199..2645095	-	298	15642458	-	VC2462	-	signal peptidase I
2433	 50.67	0	2645187..2646980	-	597	15642459	-	VC2463	-	GTP-binding protein LepA
2434	 51.38	0	2647093..2647563	-	156	15642460	-	VC2464	-	sigma-E factor regulatory protein RseC
2435	 49.69	0	2647560..2648525	-	321	15642461	rseB	VC2465	-	periplasmic negative regulator of sigmaE
2436	 49.61	0	2648522..2649160	-	212	15642462	-	VC2466	-	sigma-E factor negative regulatory protein RseA
2437	 44.85	0	2649174..2649746	-	190	15642463	-	VC2467	-	RNA polymerase sigma factor RpoE
2438	 40.40	-1	2650077..2650274	-	65	15642464	-	VC2468	-	hypothetical protein
2439	 50.82	0	2650206..2651858	+	550	15642465	-	VC2469	-	L-aspartate oxidase
2440	 49.66	0	2651883..2652329	-	148	15642466	-	VC2470	-	hypothetical protein
2441	 48.28	0	2652277..2652537	-	86	15642467	-	VC2471	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.