version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2338 44.01 0 2523852..2524235 - 127 15642364 - VC2367 - hypothetical protein 2339 47.56 0 2524550..2525266 + 238 15642365 - VC2368 - two-component response regulator 2340 46.90 0 2525325..2527682 - 785 15642366 - VC2369 - aerobic respiration control sensor protein ArcB 2341 49.43 0 2527789..2529528 - 579 15642367 - VC2370 - sensory box/GGDEF family protein 2342 50.05 0 2529596..2530546 - 316 15642368 - VC2371 - hypothetical protein 2343 31.67 -2 2530568..2530687 - 39 15642369 - VC2372 - hypothetical protein 2344 51.99 +1 2531065..2535657 + 1530 15642370 - VC2373 - glutamate synthase, large subunit 2345 52.38 +1 2535658..2537127 + 489 15642371 gltD VC2374 - glutamate synthase subunit beta 2346 43.24 0 2537161..2537271 + 36 15642372 - VC2375 - hypothetical protein 2347 53.00 +1 2537655..2542118 + 1487 15642373 gltB VC2376 - glutamate synthase subunit alpha 2348 52.61 +1 2542134..2543549 + 471 15642374 gltD VC2377 - glutamate synthase subunit beta 2349 50.57 0 2543736..2544170 + 144 15642375 - VC2378 - hypothetical protein 2350 49.86 0 2544258..2544953 + 231 15642376 - VC2379 - 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase 2351 52.10 +1 2544966..2545919 + 317 15642377 - VC2380 - adenosylcobinamide-phosphate synthase 2352 50.78 0 2545920..2546750 + 276 15642378 - VC2381 - hypothetical protein 2353 52.08 +1 2546734..2547453 + 239 15642379 - VC2382 - hypothetical protein 2354 51.57 0 2547605..2548465 + 286 15642380 - VC2383 - LysR family transcriptional regulator 2355 51.65 0 2548395..2549180 - 261 15642381 - VC2384 - hypothetical protein 2356 31.89 -2 2549642..2550613 + 323 15642382 - VC2385 - RNA-directed DNA polymerase 2357 30.68 -2 2550614..2552236 + 540 15642383 - VC2386 - hypothetical protein 2358 30.10 -2 2552249..2552866 + 205 15642384 - VC2387 - hypothetical protein 2359 48.24 0 2553477..2553959 + 160 15642385 - VC2388 - hypothetical protein 2360 51.81 +1 2554049..2557279 - 1076 15642386 carB VC2389 - carbamoyl phosphate synthase large subunit 2361 50.35 0 2557296..2558435 - 379 15642387 - VC2390 - carbamoyl phosphate synthase small subunit 2362 50.62 0 2558918..2559727 - 269 15642388 - VC2391 - dihydrodipicolinate reductase 2363 49.12 0 2559842..2560240 - 132 15642389 - VC2392 - mutator MutT protein 2364 43.45 0 2560226..2560393 + 55 15642390 - VC2393 - hypothetical protein 2365 48.97 0 2560390..2563101 - 903 15642391 secA VC2394 - preprotein translocase subunit SecA 2366 48.73 0 2563455..2563928 + 157 15642392 - VC2395 - hypothetical protein 2367 47.17 0 2564032..2564949 - 305 15642393 lpxC VC2396 - UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 2368 49.29 0 2565047..2566243 - 398 15642394 - VC2397 - cell division protein FtsZ 2369 48.61 0 2566274..2567536 - 420 15642395 ftsA VC2398 - cell division protein FtsA 2370 41.76 -1 2567529..2568311 - 260 15642396 - VC2399 - cell division protein FtsQ 2371 50.69 0 2568493..2570013 - 506 15642397 murC VC2400 - UDP-N-acetylmuramate--L-alanine ligase 2372 52.86 +1 2569967..2571031 - 354 15642398 murG VC2401 - N-acetylglucosaminyl transferase 2373 48.29 0 2571015..2572211 - 398 15642399 - VC2402 - cell division protein FtsW 2374 50.41 0 2572228..2573562 - 444 161581989 murD VC2403 - UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase 2375 49.77 0 2573574..2574656 - 360 15642401 mraY VC2404 - phospho-N-acetylmuramoyl-pentapeptide-transferase 2376 50.66 0 2574653..2576014 - 453 15642402 - VC2405 - UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate--D-alanyl-D-alanyl ligase 2377 52.76 +1 2576011..2577549 - 512 15642403 murE VC2406 - UDP-N-acetylmuramoylalanyl-D-glutamate--2,6-diaminopimelate ligase 2378 51.46 0 2577515..2579257 - 580 15642404 - VC2407 - penicillin-binding protein 3 2379 48.60 0 2579254..2579574 - 106 15642405 - VC2408 - cell division protein FtsL 2380 50.26 0 2579584..2580534 - 316 15642406 mraW VC2409 - S-adenosyl-methyltransferase MraW 2381 50.98 0 2581102..2581203 - 33 15642407 - VC2410 - hypothetical protein 2382 38.52 -2 2581198..2581332 + 44 15642408 - VC2411 - hypothetical protein 2383 49.44 0 2581292..2582719 - 475 15642409 - VC2412 - dihydrolipoamide dehydrogenase 2384 52.20 +1 2582987..2584894 - 635 15642410 aceF VC2413 - dihydrolipoamide acetyltransferase 2385 50.66 0 2584895..2587555 - 886 15642411 aceE VC2414 - pyruvate dehydrogenase subunit E1 2386 49.81 0 2587605..2588375 - 256 15642412 pdhR VC2415 - transcriptional regulator PdhR 2387 46.09 0 2588859..2590763 + 634 15642413 - VC2416 - 2`,3`-cyclic-nucleotide 2`-phosphodiesterase, putative 2388 51.49 0 2590808..2592547 - 579 161581988 - VC2417 - ssDNA exonuclease RecJ 2389 50.60 0 2592606..2593358 - 250 15642415 - VC2418 - thiol:disulfide interchange protein DsbC 2390 50.50 0 2593375..2594283 - 302 15642416 xerD VC2419 - site-specific tyrosine recombinase XerD 2391 49.33 0 2594421..2594939 + 172 161581987 - VC2420 - flavodoxin FldB 2392 53.85 +1 2595217..2595762 - 181 15642418 - VC2421 - N-acetyl-anhydromuranmyl-L-alanine amidase 2393 54.32 +1 2596058..2596948 + 296 15642419 - VC2422 - quinolinate phosphoribosyltransferase 2394 39.88 -1 2597151..2597654 + 167 15642420 - VC2423 - fimbrial protein 2395 52.81 +1 2597654..2599342 + 562 15642421 - VC2424 - type IV pilus assembly protein PilB 2396 49.06 0 2599385..2600611 + 408 15642422 - VC2425 - type IV pilin biogenesis protein PilC 2397 51.60 0 2600669..2601544 + 291 15642423 - VC2426 - leader peptidase PilD 2398 50.31 0 2601508..2602149 + 213 15642424 coaE VC2427 - dephospho-CoA kinase 2399 49.53 0 2602181..2602921 + 246 15642425 - VC2428 - hypothetical protein 2400 49.49 0 2603063..2603260 + 65 15642426 - VC2429 - zinc-binding protein 2401 52.14 +1 2603309..2605594 - 761 15642427 - VC2430 - DNA topoisomerase IV subunit A 2402 52.74 +1 2605598..2607478 - 626 15642428 - VC2431 - DNA topoisomerase IV subunit B 2403 49.32 0 2607807..2608394 - 195 15642429 - VC2432 - esterase YqiA 2404 51.04 0 2608396..2609214 - 272 15642430 - VC2433 - cyclic 3',5'-adenosine monophosphate phosphodiesterase 2405 47.65 0 2609239..2609685 - 148 15642431 - VC2434 - hypothetical protein 2406 46.73 0 2609692..2610318 - 208 15642432 - VC2435 - MutT/nudix family protein 2407 48.75 0 2610550..2611866 + 438 15642433 tolC VC2436 - outer membrane channel protein 2408 51.74 +1 2613465..2616311 - 948 15642434 - VC2438 - bifunctional glutamine-synthetase adenylyltransferase/deadenyltransferase 2409 50.08 0 2616435..2617736 - 433 15642435 - VC2439 - methyl-accepting chemotaxis protein 2410 49.54 0 2618176..2619693 - 505 15642436 - VC2440 - hypothetical protein 2411 46.00 0 2619893..2620579 + 228 15642437 - VC2441 - hypothetical protein 2412 49.69 0 2620683..2621984 + 433 15642438 - VC2442 - pho4 family protein 2413 47.95 0 2622151..2622759 + 202 15642439 - VC2443 - hypothetical protein 2414 49.81 0 2622851..2623621 - 256 15642440 - VC2444 - general secretion pathway protein B, putative 2415 52.01 +1 2623621..2625210 - 529 15642441 - VC2445 - general secretion pathway protein A 2416 54.29 +1 2625303..2626514 + 403 15642442 cca VC2446 - multifunctional tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase 2417 48.00 0 2626616..2627917 - 433 15642443 eno VC2447 - phosphopyruvate hydratase 2418 49.57 0 2627996..2629633 - 545 15642444 - VC2448 - CTP synthetase 2419 35.46 -2 2629719..2629859 + 46 15642445 - VC2449 - hypothetical protein 2420 47.92 0 2629908..2630723 - 271 161581986 mazG VC2450 - nucleoside triphosphate pyrophosphohydrolase 2421 52.10 +1 2630823..2633039 - 738 15642447 - VC2451 - GTP pyrophosphokinase 2422 50.42 0 2633103..2634425 - 440 15642448 rumA VC2452 - 23S rRNA 5-methyluridine methyltransferase 2423 50.61 0 2634597..2637380 + 927 15642449 - VC2453 - hybrid sensory histidine kinase BarA 2424 47.49 0 2637368..2638660 - 430 15642450 - VC2454 - GGDEF family protein 2425 47.45 0 2638653..2639063 - 136 15642451 - VC2455 - hypothetical protein 2426 49.18 0 2639073..2640410 - 445 15642452 - VC2456 - hypothetical protein 2427 50.13 0 2640613..2640993 - 126 15642453 acpS VC2457 - 4'-phosphopantetheinyl transferase 2428 51.23 0 2640997..2641728 - 243 15642454 - VC2458 - pyridoxal phosphate biosynthetic protein PdxJ 2429 51.10 0 2641725..2642450 - 241 15642455 recO VC2459 - DNA repair protein RecO 2430 48.67 0 2642520..2643497 - 325 15642456 era VC2460 - GTP-binding protein Era 2431 50.15 0 2643490..2644167 - 225 15642457 rnc VC2461 - ribonuclease III 2432 49.16 0 2644199..2645095 - 298 15642458 - VC2462 - signal peptidase I 2433 50.67 0 2645187..2646980 - 597 15642459 - VC2463 - GTP-binding protein LepA 2434 51.38 0 2647093..2647563 - 156 15642460 - VC2464 - sigma-E factor regulatory protein RseC 2435 49.69 0 2647560..2648525 - 321 15642461 rseB VC2465 - periplasmic negative regulator of sigmaE 2436 49.61 0 2648522..2649160 - 212 15642462 - VC2466 - sigma-E factor negative regulatory protein RseA 2437 44.85 0 2649174..2649746 - 190 15642463 - VC2467 - RNA polymerase sigma factor RpoE 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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