IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2261	 46.01	0	2443773..2444876	-	367	15642287	-	VC2289	-	thiamin biosynthesis lipoprotein ApbE
2262	 46.94	0	2444923..2446149	-	408	15642288	-	VC2290	-	Na(+)-translocating NADH-quinone reductase subunit F
2263	 46.06	0	2446183..2446779	-	198	15642289	-	VC2291	-	Na(+)-translocating NADH-quinone reductase subunit E
2264	 45.34	0	2446787..2447419	-	210	15642290	-	VC2292	-	Na(+)-translocating NADH-quinone reductase subunit D
2265	 47.03	0	2447419..2448192	-	257	15642291	-	VC2293	-	Na(+)-translocating NADH-quinone reductase subunit C
2266	 49.69	0	2448179..2449462	-	427	15642292	-	VC2294	-	Na(+)-translocating NADH-quinone reductase subunit B
2267	 48.45	0	2449432..2450820	-	462	15642293	-	VC2295	-	Na(+)-translocating NADH-quinone reductase subunit A
2268	 47.66	0	2451257..2451577	-	106	15642294	-	VC2296	-	bolA protein
2269	 45.32	0	2451622..2452872	+	416	15642295	-	VC2297	-	hypothetical protein
2270	 46.22	0	2452869..2453489	+	206	15642296	-	VC2298	-	putative lipoprotein
2271	 48.55	0	2453446..2454030	+	194	15642297	-	VC2299	-	peptidyl-prolyl cis-trans isomerase A
2272	 47.88	0	2454099..2455487	+	462	15642298	-	VC2300	-	ampG protein, putative
2273	 48.75	0	2455575..2456255	-	226	15642299	-	VC2301	-	transcriptional activator, putative
2274	 46.15	0	2456252..2456836	-	194	15642300	-	VC2302	-	RNA polymerase sigma factor
2275	 45.02	0	2456927..2457508	-	193	15642301	-	VC2303	-	hypothetical protein
2276	 26.13	-2	2457577..2457687	+	36	15642302	-	VC2304	-	hypothetical protein
2277	 43.43	0	2457746..2458636	+	296	15642303	-	VC2305	-	outer membrane protein OmpK
2278	 41.94	-1	2458633..2458725	-	30	15642304	-	VC2306	-	hypothetical protein
2279	 49.94	0	2458775..2459665	+	296	15642305	-	VC2307	-	2-dehydropantoate 2-reductase
2280	 54.85	+1	2459650..2460267	+	205	15642306	-	VC2308	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
2281	 52.35	+1	2460251..2461465	+	404	15642307	-	VC2309	-	aminotransferase, class V
2282	 51.03	0	2461535..2461969	-	144	15642308	-	VC2310	-	hypothetical protein
2283	 49.27	0	2461974..2462795	-	273	15642309	-	VC2311	-	HesA/MoeB/ThiF family protein
2284	 49.59	0	2462887..2463993	-	368	15642310	mltA	VC2312	-	murein transglycosylase A
2285	 42.34	-1	2463957..2464067	+	36	15642311	-	VC2313	-	hypothetical protein
2286	 43.70	0	2464064..2464468	-	134	15642312	-	VC2314	-	hypothetical protein
2287	 37.50	-2	2464517..2464612	-	31	15642313	-	VC2315	-	hypothetical protein
2288	 49.74	0	2464704..2466074	+	456	15642314	-	VC2316	-	N-acetylglutamate synthase
2289	 33.33	-2	2466048..2466212	-	54	15642315	-	VC2317	-	hypothetical protein
2290	 44.62	0	2466301..2466486	+	61	15642316	-	VC2318	-	hypothetical protein
2291	 52.52	+1	2466516..2468636	-	706	15642317	-	VC2319	-	exodeoxyribonuclease V, 67 kDa subunit
2292	 54.04	+1	2468633..2472259	-	1208	15642318	-	VC2320	-	exodeoxyribonuclease V, 135 kDa subunit
2293	 50.98	0	2472416..2472517	-	33	15642319	-	VC2321	-	hypothetical protein
2294	 52.74	+1	2472524..2475970	-	1148	15642320	recC	VC2322	-	exonuclease V subunit gamma
2295	 53.56	+1	2476209..2477177	-	322	15642321	-	VC2323	-	hypothetical protein
2296	 49.62	0	2477288..2478202	+	304	15642322	-	VC2324	-	LysR family transcriptional regulator
2297	 49.55	0	2478157..2478267	+	36	15642323	-	VC2325	-	hypothetical protein
2298	 50.49	0	2478318..2478626	+	102	15642324	-	VC2326	-	hypothetical protein
2299	 44.44	0	2478627..2478725	-	32	15642325	-	VC2327	-	hypothetical protein
2300	 45.45	0	2478920..2479051	+	43	15642326	-	VC2328	-	hypothetical protein
2301	 53.39	+1	2479033..2480064	+	343	15642327	-	VC2329	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2302	 51.65	0	2480146..2481390	-	414	15642328	-	VC2330	-	hypothetical protein
2303	 34.26	-2	2481353..2481460	-	35	15642329	-	VC2331	-	hypothetical protein
2304	 49.18	0	2481493..2482584	-	363	15642330	-	VC2332	-	acetyltransferase
2305	 49.10	0	2482789..2484240	+	483	15642331	-	VC2333	-	ribosomal protein S6 modification protein-related protein
2306	 48.17	0	2484430..2485413	+	327	15642332	-	VC2334	-	hypothetical protein
2307	 49.66	0	2485397..2485984	+	195	15642333	-	VC2335	-	hypothetical protein
2308	 50.14	0	2485981..2486325	-	114	15642334	-	VC2336	-	hypothetical protein
2309	 51.69	0	2486484..2487491	+	335	15642335	-	VC2337	-	LacI family transcription regulator
2310	 51.27	0	2490959..2492101	+	380	15642336	-	VC2339	-	chromate resistance protein-related protein
2311	 45.89	0	2492237..2493391	+	384	15642337	-	VC2340	-	hypothetical protein
2312	 46.75	0	2493591..2495282	+	563	15642338	-	VC2341	-	long-chain-fatty-acid--CoA ligase, putative
2313	 47.13	0	2495396..2497483	-	695	15642339	-	VC2342	-	elongation factor G
2314	 49.28	0	2497754..2499133	-	459	15642340	-	VC2343	-	DNA repair protein RadA
2315	 47.31	0	2499261..2501600	+	779	15642341	-	VC2344	-	hypothetical protein
2316	 49.44	0	2501805..2502791	-	328	15642342	serB	VC2345	-	phosphoserine phosphatase
2317	 44.98	0	2502825..2503511	+	228	15642343	-	VC2346	-	smp protein, putative
2318	 48.76	0	2503591..2504316	-	241	15642344	deoD	VC2347	-	purine nucleoside phosphorylase
2319	 50.53	0	2504399..2505619	-	406	15642345	-	VC2348	-	phosphopentomutase
2320	 52.41	+1	2505637..2506983	-	448	161581990	deoA	VC2349	-	thymidine phosphorylase
2321	 48.46	0	2507071..2507850	-	259	15642347	-	VC2350	-	deoxyribose-phosphate aldolase
2322	 49.21	0	2507952..2508140	+	62	15642348	-	VC2351	-	hypothetical protein
2323	 48.77	0	2508452..2509708	-	418	15642349	-	VC2352	-	NupC family protein
2324	 50.35	0	2509895..2510746	-	283	15642350	-	VC2353	-	hypothetical protein
2325	 48.61	0	2510691..2510834	-	47	15642351	-	VC2354	-	hypothetical protein
2326	 45.35	0	2510861..2511634	-	257	15642352	-	VC2355	-	hypothetical protein
2327	 48.71	0	2511798..2513228	-	476	15642353	-	VC2356	-	sodium/alanine symporter
2328	 41.88	-1	2513867..2514100	+	77	15642354	-	VC2357	-	hypothetical protein
2329	 42.68	-1	2514244..2514885	-	213	15642355	-	VC2358	-	hypothetical protein
2330	 48.75	0	2514885..2515565	-	226	15642356	-	VC2359	-	uracil-DNA glycosylase
2331	 47.85	0	2515934..2516794	-	286	15642357	-	VC2360	-	endonuclease IV
2332	 47.88	0	2517140..2517517	+	125	15642358	-	VC2361	-	autonomous glycyl radical cofactor GrcA
2333	 49.73	0	2517597..2518877	-	426	15642359	-	VC2362	-	threonine synthase
2334	 52.04	+1	2518874..2519830	-	318	15642360	-	VC2363	-	homoserine kinase
2335	 50.08	0	2519851..2522328	-	825	15642361	thrA	VC2364	-	bifunctional aspartokinase I/homeserine dehydrogenase I
2336	 47.20	0	2522858..2523340	+	160	15642362	-	VC2365	-	hypothetical protein
2337	 44.58	0	2523337..2523825	-	162	15642363	-	VC2366	-	ribonuclease activity regulator protein RraA
2338	 44.01	0	2523852..2524235	-	127	15642364	-	VC2367	-	hypothetical protein
2339	 47.56	0	2524550..2525266	+	238	15642365	-	VC2368	-	two-component response regulator
2340	 46.90	0	2525325..2527682	-	785	15642366	-	VC2369	-	aerobic respiration control sensor protein ArcB
2341	 49.43	0	2527789..2529528	-	579	15642367	-	VC2370	-	sensory box/GGDEF family protein
2342	 50.05	0	2529596..2530546	-	316	15642368	-	VC2371	-	hypothetical protein
2343	 31.67	-2	2530568..2530687	-	39	15642369	-	VC2372	-	hypothetical protein
2344	 51.99	+1	2531065..2535657	+	1530	15642370	-	VC2373	-	glutamate synthase, large subunit
2345	 52.38	+1	2535658..2537127	+	489	15642371	gltD	VC2374	-	glutamate synthase subunit beta
2346	 43.24	0	2537161..2537271	+	36	15642372	-	VC2375	-	hypothetical protein
2347	 53.00	+1	2537655..2542118	+	1487	15642373	gltB	VC2376	-	glutamate synthase subunit alpha
2348	 52.61	+1	2542134..2543549	+	471	15642374	gltD	VC2377	-	glutamate synthase subunit beta
2349	 50.57	0	2543736..2544170	+	144	15642375	-	VC2378	-	hypothetical protein
2350	 49.86	0	2544258..2544953	+	231	15642376	-	VC2379	-	5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase
2351	 52.10	+1	2544966..2545919	+	317	15642377	-	VC2380	-	adenosylcobinamide-phosphate synthase
2352	 50.78	0	2545920..2546750	+	276	15642378	-	VC2381	-	hypothetical protein
2353	 52.08	+1	2546734..2547453	+	239	15642379	-	VC2382	-	hypothetical protein
2354	 51.57	0	2547605..2548465	+	286	15642380	-	VC2383	-	LysR family transcriptional regulator
2355	 51.65	0	2548395..2549180	-	261	15642381	-	VC2384	-	hypothetical protein
2356	 31.89	-2	2549642..2550613	+	323	15642382	-	VC2385	-	RNA-directed DNA polymerase
2357	 30.68	-2	2550614..2552236	+	540	15642383	-	VC2386	-	hypothetical protein
2358	 30.10	-2	2552249..2552866	+	205	15642384	-	VC2387	-	hypothetical protein
2359	 48.24	0	2553477..2553959	+	160	15642385	-	VC2388	-	hypothetical protein
2360	 51.81	+1	2554049..2557279	-	1076	15642386	carB	VC2389	-	carbamoyl phosphate synthase large subunit
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.