IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2220	 49.56	0	2403195..2403983	-	262	15642246	-	VC2248	-	UDP-N-acetylglucosamine acyltransferase
2221	 44.81	0	2403985..2404446	-	153	15642247	fabZ	VC2249	-	(3R)-hydroxymyristoyl-ACP dehydratase
2222	 49.24	0	2404522..2405577	-	351	15642248	lpxD	VC2250	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2223	 44.71	0	2405587..2406096	-	169	15642249	-	VC2251	-	outer membrane protein OmpH
2224	 47.76	0	2406111..2408522	-	803	15642250	-	VC2252	-	outer membrane protein assembly factor YaeT
2225	 48.64	0	2408571..2409929	-	452	15642251	-	VC2253	-	hypothetical protein
2226	 50.79	0	2409926..2411134	-	402	15642252	-	VC2254	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2227	 48.16	0	2411183..2412025	-	280	15642253	-	VC2255	-	phosphatidate cytidylyltransferase
2228	 46.17	0	2412043..2412813	-	256	15642254	-	VC2256	-	undecaprenyl diphosphate synthase
2229	 47.31	0	2412887..2413444	-	185	15642255	frr	VC2257	-	ribosome recycling factor
2230	 49.04	0	2413498..2414229	-	243	15642256	pyrH	VC2258	-	uridylate kinase
2231	 48.16	0	2414417..2415259	-	280	15642257	tsf	VC2259	-	elongation factor Ts
2232	 47.33	0	2415391..2416119	-	242	15642258	rpsB	VC2260	-	30S ribosomal protein S2
2233	 46.86	0	2416460..2417302	+	280	15642259	-	VC2261	-	methionine aminopeptidase
2234	 49.28	0	2417392..2420037	+	881	15642260	-	VC2262	-	PII uridylyl-transferase
2235	 43.43	0	2420112..2420210	-	32	15642261	-	VC2263	-	hypothetical protein
2236	 39.61	-1	2420283..2420696	+	137	15642262	-	VC2264	-	hypothetical protein
2237	 48.82	0	2420737..2421246	-	169	15642263	-	VC2265	-	phosphatidylglycerophosphatase A
2238	 50.35	0	2421243..2422247	-	334	15642264	-	VC2266	-	thiamine monophosphate kinase
2239	 46.92	0	2422308..2422778	-	156	15642265	nusB	VC2267	-	transcription antitermination protein NusB
2240	 46.92	0	2422778..2423248	-	156	161581993	ribH	VC2268	-	riboflavin synthase subunit beta
2241	 51.44	0	2423513..2424622	-	369	15642267	-	VC2269	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2242	 48.78	0	2424663..2425316	-	217	15642268	-	VC2270	-	riboflavin synthase subunit alpha
2243	 51.90	+1	2425321..2426424	-	367	15642269	-	VC2271	-	riboflavin-specific deaminase
2244	 48.00	0	2426450..2426899	-	149	161581992	-	VC2272	-	transcriptional regulator NrdR
2245	 52.07	+1	2426999..2428252	-	417	15642271	proA	VC2273	-	gamma-glutamyl phosphate reductase
2246	 52.29	+1	2428261..2429394	-	377	161581991	-	VC2274	-	gamma-glutamyl kinase
2247	 47.44	0	2429515..2429904	-	129	15642273	-	VC2275	-	DNA-binding transcriptional regulator Crl
2248	 48.40	0	2430038..2431285	-	415	15642274	frsA	VC2276	-	fermentation/respiration switch protein
2249	 47.74	0	2431382..2431846	-	154	15642275	-	VC2277	-	xanthine-guanine phosphoribosyltransferase
2250	 49.34	0	2431884..2433176	-	430	15642276	-	VC2278	-	hypothetical protein
2251	 48.72	0	2433923..2435527	+	534	15642277	-	VC2279	-	aminoacyl-histidine dipeptidase
2252	 46.40	0	2435761..2436204	+	147	15642278	-	VC2280	-	hypothetical protein
2253	 50.22	0	2436201..2437106	+	301	15642279	-	VC2281	-	ribosomal protein S6 modification protein
2254	 48.85	0	2437066..2438154	+	362	15642280	-	VC2282	-	hypothetical protein
2255	 48.30	0	2438223..2439578	-	451	15642281	-	VC2283	-	sodium-dependent transporter
2256	 30.39	-2	2439637..2439738	+	33	15642282	-	VC2284	-	hypothetical protein
2257	 44.60	0	2439735..2441252	-	505	15642283	-	VC2285	-	GGDEF family protein
2258	 43.19	0	2441316..2442086	-	256	15642284	-	VC2286	-	hypothetical protein
2259	 47.00	0	2442332..2443414	-	360	15642285	-	VC2287	-	DNA polymerase IV
2260	 49.57	0	2443523..2443756	-	77	15642286	-	VC2288	-	hypothetical protein
2261	 46.01	0	2443773..2444876	-	367	15642287	-	VC2289	-	thiamin biosynthesis lipoprotein ApbE
2262	 46.94	0	2444923..2446149	-	408	15642288	-	VC2290	-	Na(+)-translocating NADH-quinone reductase subunit F
2263	 46.06	0	2446183..2446779	-	198	15642289	-	VC2291	-	Na(+)-translocating NADH-quinone reductase subunit E
2264	 45.34	0	2446787..2447419	-	210	15642290	-	VC2292	-	Na(+)-translocating NADH-quinone reductase subunit D
2265	 47.03	0	2447419..2448192	-	257	15642291	-	VC2293	-	Na(+)-translocating NADH-quinone reductase subunit C
2266	 49.69	0	2448179..2449462	-	427	15642292	-	VC2294	-	Na(+)-translocating NADH-quinone reductase subunit B
2267	 48.45	0	2449432..2450820	-	462	15642293	-	VC2295	-	Na(+)-translocating NADH-quinone reductase subunit A
2268	 47.66	0	2451257..2451577	-	106	15642294	-	VC2296	-	bolA protein
2269	 45.32	0	2451622..2452872	+	416	15642295	-	VC2297	-	hypothetical protein
2270	 46.22	0	2452869..2453489	+	206	15642296	-	VC2298	-	putative lipoprotein
2271	 48.55	0	2453446..2454030	+	194	15642297	-	VC2299	-	peptidyl-prolyl cis-trans isomerase A
2272	 47.88	0	2454099..2455487	+	462	15642298	-	VC2300	-	ampG protein, putative
2273	 48.75	0	2455575..2456255	-	226	15642299	-	VC2301	-	transcriptional activator, putative
2274	 46.15	0	2456252..2456836	-	194	15642300	-	VC2302	-	RNA polymerase sigma factor
2275	 45.02	0	2456927..2457508	-	193	15642301	-	VC2303	-	hypothetical protein
2276	 26.13	-2	2457577..2457687	+	36	15642302	-	VC2304	-	hypothetical protein
2277	 43.43	0	2457746..2458636	+	296	15642303	-	VC2305	-	outer membrane protein OmpK
2278	 41.94	-1	2458633..2458725	-	30	15642304	-	VC2306	-	hypothetical protein
2279	 49.94	0	2458775..2459665	+	296	15642305	-	VC2307	-	2-dehydropantoate 2-reductase
2280	 54.85	+1	2459650..2460267	+	205	15642306	-	VC2308	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
2281	 52.35	+1	2460251..2461465	+	404	15642307	-	VC2309	-	aminotransferase, class V
2282	 51.03	0	2461535..2461969	-	144	15642308	-	VC2310	-	hypothetical protein
2283	 49.27	0	2461974..2462795	-	273	15642309	-	VC2311	-	HesA/MoeB/ThiF family protein
2284	 49.59	0	2462887..2463993	-	368	15642310	mltA	VC2312	-	murein transglycosylase A
2285	 42.34	-1	2463957..2464067	+	36	15642311	-	VC2313	-	hypothetical protein
2286	 43.70	0	2464064..2464468	-	134	15642312	-	VC2314	-	hypothetical protein
2287	 37.50	-2	2464517..2464612	-	31	15642313	-	VC2315	-	hypothetical protein
2288	 49.74	0	2464704..2466074	+	456	15642314	-	VC2316	-	N-acetylglutamate synthase
2289	 33.33	-2	2466048..2466212	-	54	15642315	-	VC2317	-	hypothetical protein
2290	 44.62	0	2466301..2466486	+	61	15642316	-	VC2318	-	hypothetical protein
2291	 52.52	+1	2466516..2468636	-	706	15642317	-	VC2319	-	exodeoxyribonuclease V, 67 kDa subunit
2292	 54.04	+1	2468633..2472259	-	1208	15642318	-	VC2320	-	exodeoxyribonuclease V, 135 kDa subunit
2293	 50.98	0	2472416..2472517	-	33	15642319	-	VC2321	-	hypothetical protein
2294	 52.74	+1	2472524..2475970	-	1148	15642320	recC	VC2322	-	exonuclease V subunit gamma
2295	 53.56	+1	2476209..2477177	-	322	15642321	-	VC2323	-	hypothetical protein
2296	 49.62	0	2477288..2478202	+	304	15642322	-	VC2324	-	LysR family transcriptional regulator
2297	 49.55	0	2478157..2478267	+	36	15642323	-	VC2325	-	hypothetical protein
2298	 50.49	0	2478318..2478626	+	102	15642324	-	VC2326	-	hypothetical protein
2299	 44.44	0	2478627..2478725	-	32	15642325	-	VC2327	-	hypothetical protein
2300	 45.45	0	2478920..2479051	+	43	15642326	-	VC2328	-	hypothetical protein
2301	 53.39	+1	2479033..2480064	+	343	15642327	-	VC2329	-	2,3,4,5-tetrahydropyridine-2-carboxylate N-succinyltransferase
2302	 51.65	0	2480146..2481390	-	414	15642328	-	VC2330	-	hypothetical protein
2303	 34.26	-2	2481353..2481460	-	35	15642329	-	VC2331	-	hypothetical protein
2304	 49.18	0	2481493..2482584	-	363	15642330	-	VC2332	-	acetyltransferase
2305	 49.10	0	2482789..2484240	+	483	15642331	-	VC2333	-	ribosomal protein S6 modification protein-related protein
2306	 48.17	0	2484430..2485413	+	327	15642332	-	VC2334	-	hypothetical protein
2307	 49.66	0	2485397..2485984	+	195	15642333	-	VC2335	-	hypothetical protein
2308	 50.14	0	2485981..2486325	-	114	15642334	-	VC2336	-	hypothetical protein
2309	 51.69	0	2486484..2487491	+	335	15642335	-	VC2337	-	LacI family transcription regulator
2310	 51.27	0	2490959..2492101	+	380	15642336	-	VC2339	-	chromate resistance protein-related protein
2311	 45.89	0	2492237..2493391	+	384	15642337	-	VC2340	-	hypothetical protein
2312	 46.75	0	2493591..2495282	+	563	15642338	-	VC2341	-	long-chain-fatty-acid--CoA ligase, putative
2313	 47.13	0	2495396..2497483	-	695	15642339	-	VC2342	-	elongation factor G
2314	 49.28	0	2497754..2499133	-	459	15642340	-	VC2343	-	DNA repair protein RadA
2315	 47.31	0	2499261..2501600	+	779	15642341	-	VC2344	-	hypothetical protein
2316	 49.44	0	2501805..2502791	-	328	15642342	serB	VC2345	-	phosphoserine phosphatase
2317	 44.98	0	2502825..2503511	+	228	15642343	-	VC2346	-	smp protein, putative
2318	 48.76	0	2503591..2504316	-	241	15642344	deoD	VC2347	-	purine nucleoside phosphorylase
2319	 50.53	0	2504399..2505619	-	406	15642345	-	VC2348	-	phosphopentomutase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.