IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2184	 43.35	0	2364507..2365205	+	232	15642210	-	VC2212	-	hypothetical protein
2185	 47.72	0	2365293..2366258	-	321	15642211	-	VC2213	-	outer membrane protein OmpA
2186	 48.50	0	2366554..2368083	-	509	15642212	gltX	VC2214	-	glutamyl-tRNA synthetase
2187	 51.02	0	2368152..2370899	+	915	15642213	-	VC2215	-	cation transporter E1-E2 family ATPase
2188	 46.80	0	2370896..2371348	+	150	15642214	-	VC2216	-	hypothetical protein
2189	 49.55	0	2371485..2374136	-	883	15642215	-	VC2217	-	beta-N-acetylhexosaminidase
2190	 42.11	-1	2374169..2374282	+	37	15642216	-	VC2218	-	hypothetical protein
2191	 45.30	0	2374364..2374480	-	38	15642217	-	VC2219	-	hypothetical protein
2192	 47.27	0	2374553..2375449	+	298	15642218	-	VC2220	-	hypothetical protein
2193	 43.26	0	2375930..2376070	+	46	15642219	-	VC2221	-	hypothetical protein
2194	 49.57	0	2376252..2376830	+	192	15642220	-	VC2222	-	hypothetical protein
2195	 47.41	0	2376860..2377882	+	340	15642221	-	VC2223	-	pseudouridine synthase family 1 protein
2196	 45.16	0	2377980..2379518	-	512	15642222	-	VC2224	-	GGDEF family protein
2197	 46.41	0	2379749..2380375	-	208	15642223	upp	VC2225	-	uracil phosphoribosyltransferase
2198	 50.14	0	2380542..2381582	+	346	15642224	-	VC2226	-	phosphoribosylaminoimidazole synthetase
2199	 48.51	0	2381585..2382223	+	212	15642225	purN	VC2227	-	phosphoribosylglycinamide formyltransferase
2200	 39.81	-1	2382242..2382349	+	35	15642226	-	VC2228	-	hypothetical protein
2201	 50.24	0	2382364..2383209	-	281	15642227	-	VC2229	-	hypothetical protein
2202	 45.66	0	2383272..2383847	-	191	15642228	gmhA	VC2230	-	phosphoheptose isomerase
2203	 50.31	0	2384165..2386609	+	814	15642229	fadE	VC2231	-	acyl-CoA dehydrogenase
2204	 47.30	0	2386756..2388015	-	419	15642230	-	VC2232	-	hypothetical protein
2205	 47.58	0	2388024..2388767	-	247	15642231	-	VC2233	-	DNA polymerase III subunit epsilon
2206	 52.87	+1	2388824..2389294	+	156	15642232	rnhA	VC2234	-	ribonuclease H
2207	 45.39	0	2389365..2390102	-	245	15642233	-	VC2235	-	hypothetical protein
2208	 49.41	0	2390140..2390898	+	252	15642234	-	VC2236	-	hydroxyacylglutathione hydrolase GloB, putative
2209	 49.66	0	2390970..2392568	+	532	15642235	-	VC2237	-	membrane-bound lytic murein transglycosylase D
2210	 47.87	0	2392585..2393430	-	281	15642236	-	VC2238	-	hypothetical protein
2211	 47.54	0	2393498..2393842	-	114	15642237	-	VC2239	-	nitrogen regulatory protein P-II
2212	 44.76	0	2393996..2394520	-	174	15642238	-	VC2240	-	decarboxylase
2213	 51.54	0	2394897..2395220	-	107	15642239	-	VC2241	-	cytochrome c554
2214	 52.31	+1	2395256..2396578	-	440	15642240	-	VC2242	-	mesJ protein
2215	 46.67	0	2396546..2396650	+	34	15642241	-	VC2243	-	hypothetical protein
2216	 50.00	0	2396718..2397677	-	319	15642242	-	VC2244	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2217	 50.73	0	2397732..2401226	-	1164	15642243	dnaE	VC2245	-	DNA polymerase III subunit alpha
2218	 51.53	0	2401250..2401870	-	206	15642244	rnhB	VC2246	-	ribonuclease HII
2219	 51.84	+1	2401895..2403034	-	379	15642245	lpxB	VC2247	-	lipid-A-disaccharide synthase
2220	 49.56	0	2403195..2403983	-	262	15642246	-	VC2248	-	UDP-N-acetylglucosamine acyltransferase
2221	 44.81	0	2403985..2404446	-	153	15642247	fabZ	VC2249	-	(3R)-hydroxymyristoyl-ACP dehydratase
2222	 49.24	0	2404522..2405577	-	351	15642248	lpxD	VC2250	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2223	 44.71	0	2405587..2406096	-	169	15642249	-	VC2251	-	outer membrane protein OmpH
2224	 47.76	0	2406111..2408522	-	803	15642250	-	VC2252	-	outer membrane protein assembly factor YaeT
2225	 48.64	0	2408571..2409929	-	452	15642251	-	VC2253	-	hypothetical protein
2226	 50.79	0	2409926..2411134	-	402	15642252	-	VC2254	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2227	 48.16	0	2411183..2412025	-	280	15642253	-	VC2255	-	phosphatidate cytidylyltransferase
2228	 46.17	0	2412043..2412813	-	256	15642254	-	VC2256	-	undecaprenyl diphosphate synthase
2229	 47.31	0	2412887..2413444	-	185	15642255	frr	VC2257	-	ribosome recycling factor
2230	 49.04	0	2413498..2414229	-	243	15642256	pyrH	VC2258	-	uridylate kinase
2231	 48.16	0	2414417..2415259	-	280	15642257	tsf	VC2259	-	elongation factor Ts
2232	 47.33	0	2415391..2416119	-	242	15642258	rpsB	VC2260	-	30S ribosomal protein S2
2233	 46.86	0	2416460..2417302	+	280	15642259	-	VC2261	-	methionine aminopeptidase
2234	 49.28	0	2417392..2420037	+	881	15642260	-	VC2262	-	PII uridylyl-transferase
2235	 43.43	0	2420112..2420210	-	32	15642261	-	VC2263	-	hypothetical protein
2236	 39.61	-1	2420283..2420696	+	137	15642262	-	VC2264	-	hypothetical protein
2237	 48.82	0	2420737..2421246	-	169	15642263	-	VC2265	-	phosphatidylglycerophosphatase A
2238	 50.35	0	2421243..2422247	-	334	15642264	-	VC2266	-	thiamine monophosphate kinase
2239	 46.92	0	2422308..2422778	-	156	15642265	nusB	VC2267	-	transcription antitermination protein NusB
2240	 46.92	0	2422778..2423248	-	156	161581993	ribH	VC2268	-	riboflavin synthase subunit beta
2241	 51.44	0	2423513..2424622	-	369	15642267	-	VC2269	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2242	 48.78	0	2424663..2425316	-	217	15642268	-	VC2270	-	riboflavin synthase subunit alpha
2243	 51.90	+1	2425321..2426424	-	367	15642269	-	VC2271	-	riboflavin-specific deaminase
2244	 48.00	0	2426450..2426899	-	149	161581992	-	VC2272	-	transcriptional regulator NrdR
2245	 52.07	+1	2426999..2428252	-	417	15642271	proA	VC2273	-	gamma-glutamyl phosphate reductase
2246	 52.29	+1	2428261..2429394	-	377	161581991	-	VC2274	-	gamma-glutamyl kinase
2247	 47.44	0	2429515..2429904	-	129	15642273	-	VC2275	-	DNA-binding transcriptional regulator Crl
2248	 48.40	0	2430038..2431285	-	415	15642274	frsA	VC2276	-	fermentation/respiration switch protein
2249	 47.74	0	2431382..2431846	-	154	15642275	-	VC2277	-	xanthine-guanine phosphoribosyltransferase
2250	 49.34	0	2431884..2433176	-	430	15642276	-	VC2278	-	hypothetical protein
2251	 48.72	0	2433923..2435527	+	534	15642277	-	VC2279	-	aminoacyl-histidine dipeptidase
2252	 46.40	0	2435761..2436204	+	147	15642278	-	VC2280	-	hypothetical protein
2253	 50.22	0	2436201..2437106	+	301	15642279	-	VC2281	-	ribosomal protein S6 modification protein
2254	 48.85	0	2437066..2438154	+	362	15642280	-	VC2282	-	hypothetical protein
2255	 48.30	0	2438223..2439578	-	451	15642281	-	VC2283	-	sodium-dependent transporter
2256	 30.39	-2	2439637..2439738	+	33	15642282	-	VC2284	-	hypothetical protein
2257	 44.60	0	2439735..2441252	-	505	15642283	-	VC2285	-	GGDEF family protein
2258	 43.19	0	2441316..2442086	-	256	15642284	-	VC2286	-	hypothetical protein
2259	 47.00	0	2442332..2443414	-	360	15642285	-	VC2287	-	DNA polymerase IV
2260	 49.57	0	2443523..2443756	-	77	15642286	-	VC2288	-	hypothetical protein
2261	 46.01	0	2443773..2444876	-	367	15642287	-	VC2289	-	thiamin biosynthesis lipoprotein ApbE
2262	 46.94	0	2444923..2446149	-	408	15642288	-	VC2290	-	Na(+)-translocating NADH-quinone reductase subunit F
2263	 46.06	0	2446183..2446779	-	198	15642289	-	VC2291	-	Na(+)-translocating NADH-quinone reductase subunit E
2264	 45.34	0	2446787..2447419	-	210	15642290	-	VC2292	-	Na(+)-translocating NADH-quinone reductase subunit D
2265	 47.03	0	2447419..2448192	-	257	15642291	-	VC2293	-	Na(+)-translocating NADH-quinone reductase subunit C
2266	 49.69	0	2448179..2449462	-	427	15642292	-	VC2294	-	Na(+)-translocating NADH-quinone reductase subunit B
2267	 48.45	0	2449432..2450820	-	462	15642293	-	VC2295	-	Na(+)-translocating NADH-quinone reductase subunit A
2268	 47.66	0	2451257..2451577	-	106	15642294	-	VC2296	-	bolA protein
2269	 45.32	0	2451622..2452872	+	416	15642295	-	VC2297	-	hypothetical protein
2270	 46.22	0	2452869..2453489	+	206	15642296	-	VC2298	-	putative lipoprotein
2271	 48.55	0	2453446..2454030	+	194	15642297	-	VC2299	-	peptidyl-prolyl cis-trans isomerase A
2272	 47.88	0	2454099..2455487	+	462	15642298	-	VC2300	-	ampG protein, putative
2273	 48.75	0	2455575..2456255	-	226	15642299	-	VC2301	-	transcriptional activator, putative
2274	 46.15	0	2456252..2456836	-	194	15642300	-	VC2302	-	RNA polymerase sigma factor
2275	 45.02	0	2456927..2457508	-	193	15642301	-	VC2303	-	hypothetical protein
2276	 26.13	-2	2457577..2457687	+	36	15642302	-	VC2304	-	hypothetical protein
2277	 43.43	0	2457746..2458636	+	296	15642303	-	VC2305	-	outer membrane protein OmpK
2278	 41.94	-1	2458633..2458725	-	30	15642304	-	VC2306	-	hypothetical protein
2279	 49.94	0	2458775..2459665	+	296	15642305	-	VC2307	-	2-dehydropantoate 2-reductase
2280	 54.85	+1	2459650..2460267	+	205	15642306	-	VC2308	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme
2281	 52.35	+1	2460251..2461465	+	404	15642307	-	VC2309	-	aminotransferase, class V
2282	 51.03	0	2461535..2461969	-	144	15642308	-	VC2310	-	hypothetical protein
2283	 49.27	0	2461974..2462795	-	273	15642309	-	VC2311	-	HesA/MoeB/ThiF family protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.