IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
173	 36.90	-2	175343..176941	-	532	15640205	-	VC0175	-	deoxycytidylate deaminase-related protein
174	 39.16	-1	177450..177758	-	102	15640206	-	VC0176	-	transcriptional regulator, putative
175	 37.77	-2	177861..178424	+	187	15640207	-	VC0177	-	hypothetical protein
176	 42.51	-1	179338..180405	+	355	15640208	-	VC0178	-	patatin-related protein
177	 41.80	-1	180419..181729	+	436	15640209	-	VC0179	-	hypothetical protein
178	 43.53	0	181732..183486	+	584	15640210	-	VC0180	-	hypothetical protein
179	 45.65	0	183476..183946	+	156	15640211	-	VC0181	-	hypothetical protein
180	 37.27	-2	183957..184388	-	143	15640212	-	VC0182	-	hypothetical protein
181	 37.55	-2	184360..186471	-	703	15640213	-	VC0183	-	hypothetical protein
182	 39.61	-1	186481..188169	-	562	15640214	-	VC0184	-	hypothetical protein
183	 36.95	-2	188166..189380	-	404	15640215	-	VC0185	-	transposase, putative
184	 52.16	+1	189457..190821	-	454	15640216	-	VC0186	-	glutathione reductase
185	 51.19	0	190915..191754	-	279	15640217	-	VC0187	-	hypothetical protein
186	 52.13	+1	192034..194076	+	680	15640218	-	VC0188	-	oligopeptidase A
187	 48.48	0	194101..194199	+	32	15640219	-	VC0189	-	hypothetical protein
188	 53.08	+1	194214..196385	+	723	15640220	uvrD	VC0190	-	DNA-dependent helicase II
189	 51.42	0	197130..197798	-	222	15640221	-	VC0191	-	hypothetical protein
190	 50.06	0	197873..198685	-	270	15640222	-	VC0192	-	AraC/XylS family transcriptional regulator
191	 46.88	0	198722..198817	-	31	15640223	-	VC0193	-	hypothetical protein
192	 55.29	+1	198833..200599	-	588	15640224	-	VC0194	-	gamma-glutamyltranspeptidase
193	 52.26	+1	200761..201669	-	302	15640225	-	VC0195	-	rarD protein
194	 52.89	+1	201830..203665	+	611	161582034	-	VC0196	-	ATP-dependent DNA helicase RecQ
195	 52.67	+1	203658..203957	+	99	15640227	-	VC0197	-	gene 3 protein-related protein
196	 50.00	0	204113..204490	+	125	15640228	-	VC0198	-	hypothetical protein
197	 50.71	0	204526..206361	-	611	15640229	-	VC0199	-	hemolysin secretion ATP-binding protein, putative
198	 49.56	0	206433..208589	+	718	15640230	-	VC0200	-	iron(III) compound receptor
199	 52.33	+1	208648..209505	+	285	15640231	-	VC0201	-	iron(III) ABC transporter, ATP-binding protein
200	 53.54	+1	209496..210455	+	319	15640232	-	VC0202	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
201	 56.01	+2	210452..212413	+	653	15640233	-	VC0203	-	iron-hydroxamate transporter permease subunit
202	 53.36	+1	212440..213288	-	282	15640234	-	VC0204	-	hypothetical protein
203	 35.94	-2	213331..213522	+	63	15640235	-	VC0205	-	hypothetical protein
204	 53.70	+1	213504..214421	+	305	15640236	murQ	VC0206	-	N-acetylmuramic acid-6-phosphate etherase
205	 51.90	+1	214449..215897	+	482	15640237	murP	VC0207	-	N-acetylmuramic acid phosphotransfer permease
206	 43.35	0	216004..216492	-	162	15640238	-	VC0208	-	hypothetical protein
207	 52.13	+1	216558..217424	-	288	15640239	-	VC0209	-	hypothetical protein
208	 52.72	+1	217588..218304	+	238	161582033	rph	VC0210	-	ribonuclease PH
209	 48.13	0	218670..219311	+	213	161582032	pyrE	VC0211	-	orotate phosphoribosyltransferase
210	 52.76	+1	219397..220374	-	325	15640242	-	VC0212	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
211	 49.53	0	220385..221341	-	318	15640243	-	VC0213	-	lipid A biosynthesis lauroyl acyltransferase
212	 48.05	0	221338..221928	-	196	161582031	slmA	VC0214	-	nucleoid occlusion protein
213	 55.25	+1	222087..223286	-	399	15640245	-	VC0215	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
214	 50.44	0	223454..225148	+	564	15640246	-	VC0216	-	methyl-accepting chemotaxis protein
215	 51.26	0	225260..225934	+	224	15640247	radC	VC0217	-	DNA repair protein RadC
216	 44.73	0	226229..226465	+	78	15640248	-	VC0218	-	ribosomal protein L28
217	 42.86	-1	226479..226646	+	55	15640249	rpmG	VC0219	-	50S ribosomal protein L33
218	 49.28	0	226867..227355	+	162	15640250	-	VC0220	-	hypothetical protein
219	 52.22	+1	227365..228174	+	269	15640251	-	VC0221	-	formamidopyrimidine-DNA glycosylase
220	 49.09	0	228271..228765	-	164	15640252	coaD	VC0222	-	phosphopantetheine adenylyltransferase
221	 51.45	0	228876..229913	+	345	15640253	-	VC0223	-	ADP-heptose--LPS heptosyltransferase II, putative
222	 49.10	0	229975..230754	-	259	15640254	-	VC0224	-	lipopolysaccharide biosynthesis glycosyltransferase, putative
223	 51.68	0	230797..231870	-	357	15640255	-	VC0225	-	lipopolysaccharide biosynthesis protein, putative
224	 39.58	-1	231873..231968	-	31	15640256	-	VC0226	-	hypothetical protein
225	 46.16	0	231950..232705	+	251	15640257	-	VC0227	-	3-deoxy-D-manno-octulosonic-acid kinase
226	 32.60	-2	232709..233668	+	319	15640258	-	VC0228	-	hypothetical protein
227	 43.98	0	233672..234601	-	309	15640259	-	VC0229	-	hypothetical protein
228	 46.24	0	234598..235341	-	247	15640260	-	VC0230	-	hypothetical protein
229	 45.52	0	235338..236921	-	527	15640261	-	VC0231	-	hypothetical protein
230	 44.09	0	236912..237292	-	126	15640262	-	VC0232	-	hypothetical protein
231	 47.50	0	237289..238608	-	439	15640263	-	VC0233	-	3-deoxy-D-manno-octulosonic-acid transferase
232	 44.23	0	238569..239357	-	262	15640264	-	VC0234	-	hypothetical protein
233	 44.48	0	239354..240403	-	349	15640265	-	VC0235	-	lipopolysaccharide biosynthesis protein, putative
234	 46.30	0	240400..241440	-	346	15640266	-	VC0236	-	ADP-heptose--LPS heptosyltransferase II
235	 35.33	-2	241437..242636	-	399	15640267	-	VC0237	-	hypothetical protein
236	 37.04	-2	242638..243204	-	188	15640268	-	VC0238	-	hexapaptide repeat-containing transferase
237	 45.23	0	243212..244984	-	590	15640269	-	VC0239	-	hypothetical protein
238	 46.14	0	245143..246087	-	314	15640270	rfaD	VC0240	-	ADP-L-glycero-D-mannoheptose-6-epimerase
239	 42.13	-1	246529..247926	+	465	15640271	-	VC0241	-	mannose-1-phosphate guanylyltransferase
240	 38.65	-2	247929..249320	+	463	15640272	-	VC0242	-	phosphomannomutase
241	 39.57	-1	249323..250444	+	373	15640273	-	VC0243	-	GDP-mannose 4,6-dehydratase
242	 40.04	-1	250455..251558	+	367	15640274	-	VC0244	-	perosamine synthase
243	 35.13	-2	251555..252946	+	463	15640275	-	VC0245	-	rfbG protein
244	 34.84	-2	252918..253712	+	264	15640276	-	VC0246	-	lipopolysaccharide/O-antigen transport protein
245	 36.40	-2	253651..254466	+	271	15640277	-	VC0247	-	lipopolysaccharide/O-antigen transport protein
246	 33.33	-2	254505..254747	+	80	15640278	-	VC0248	-	acyl carrier protein, putative
247	 37.64	-2	254753..256168	+	471	15640279	-	VC0249	-	rfbL protein
248	 42.49	-1	256177..257301	+	374	15640280	-	VC0250	-	iron-containing alcohol dehydrogenase family protein RfbM
249	 42.37	-1	257292..259769	+	825	15640281	-	VC0251	-	acyl protein synthase/acyl-CoA reductase RfbN
250	 38.98	-1	259839..260405	+	188	15640282	-	VC0252	-	acetyltransferase
251	 46.91	0	260555..260635	+	26	15640283	-	VC0253	-	IS1004 transposase
252	 32.88	-2	262098..262319	+	73	15640284	-	VC0255	-	rfbT-related protein
253	 43.19	0	262326..262670	+	114	15640285	-	VC0256	-	transposase OrfAB, subunit A
254	 44.44	0	262667..263539	+	290	15640286	-	VC0257	-	transposase OrfAB, subunit B
255	 31.87	-2	263536..264219	+	227	15640287	-	VC0258	-	rfbT protein
256	 35.36	-2	264254..265486	-	410	15640288	-	VC0259	-	lipopolysaccharide biosynthesis protein RfbV
257	 43.52	0	265374..267239	-	621	15640289	-	VC0260	-	mannosyl-transferase
258	 39.01	-1	267300..267440	-	46	15640290	-	VC0261	-	hypothetical protein
259	 45.06	0	267392..268363	+	323	15640291	-	VC0262	-	UDP-glucose 4-epimerase
260	 43.78	0	268371..268925	+	184	15640292	-	VC0263	-	galactosyl-transferase, putative
261	 55.19	+1	269068..270435	+	455	15640293	-	VC0264	-	hypothetical protein
262	 49.48	0	270697..271935	-	412	15640294	-	VC0265	-	hypothetical protein
263	 54.28	+1	271990..272562	-	190	15640295	-	VC0266	-	hypothetical protein
264	 53.25	+1	272562..273485	-	307	15640296	-	VC0267	-	D-isomer specific 2-hydroxyacid dehydrogenase family protein
265	 47.98	0	273478..274146	+	222	15640297	-	VC0268	-	hypothetical protein
266	 41.25	-1	274509..275708	+	399	15640298	-	VC0269	-	mannose-6-phosphate isomerase
267	 44.24	0	275674..276654	+	326	15640299	-	VC0270	-	ROK family protein
268	 53.07	+1	277002..278060	-	352	15640300	-	VC0271	-	hypothetical protein
269	 43.64	0	278069..278233	+	54	15640301	-	VC0272	-	hypothetical protein
270	 47.25	0	278432..278704	+	90	15640302	-	VC0273	-	DNA-binding protein HU
271	 47.76	0	278705..279439	+	244	15640303	-	VC0274	-	hypothetical protein
272	 55.19	+1	279539..280828	-	429	15640304	-	VC0275	-	phosphoribosylamine--glycine ligase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.