IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2146	 48.19	0	2318621..2320282	-	553	15642173	ushA	VC2174	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
2147	 50.47	0	2320824..2321675	-	283	15642174	-	VC2175	-	2-dehydro-3-deoxyphosphooctonate aldolase
2148	 47.48	0	2321695..2322507	-	270	15642175	-	VC2176	-	hypothetical protein
2149	 46.09	0	2322523..2322906	-	127	15642176	-	VC2177	-	hypothetical protein
2150	 51.92	+1	2322906..2323766	-	286	15642177	-	VC2178	-	hemK protein
2151	 50.32	0	2323770..2324858	-	362	15642178	prfA	VC2179	-	peptide chain release factor 1
2152	 50.08	0	2324888..2326147	-	419	15642179	hemA	VC2180	-	glutamyl-tRNA reductase
2153	 46.23	0	2326288..2326923	+	211	15642180	lolB	VC2181	-	outer membrane lipoprotein LolB
2154	 51.01	0	2326905..2327792	+	295	15642181	-	VC2182	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2155	 49.84	0	2327823..2328767	+	314	15642182	-	VC2183	-	ribose-phosphate pyrophosphokinase
2156	 48.22	0	2328936..2329526	+	196	15642183	-	VC2184	-	peptidyl-tRNA hydrolase
2157	 48.63	0	2329537..2330628	+	363	161581994	-	VC2185	-	translation-associated GTPase
2158	 43.18	0	2332845..2332976	+	43	15642185	-	VC2186	-	hypothetical protein
2159	 48.32	0	2332968..2334101	-	377	15642186	-	VC2187	-	flagellin
2160	 48.77	0	2334656..2335795	-	379	15642187	-	VC2188	-	flagellin
2161	 41.11	-1	2335944..2336123	-	59	15642188	-	VC2189	-	hypothetical protein
2162	 47.40	0	2336203..2337396	-	397	15642189	flgL	VC2190	-	flagellar hook-associated protein FlgL
2163	 47.95	0	2337409..2339283	-	624	15642190	flgK	VC2191	-	flagellar hook-associated protein FlgK
2164	 48.78	0	2339463..2340401	-	312	15642191	flgJ	VC2192	-	peptidoglycan hydrolase
2165	 50.46	0	2340412..2341497	-	361	15642192	flgI	VC2193	-	flagellar basal body P-ring protein
2166	 49.11	0	2341588..2342373	-	261	15642193	flgH	VC2194	-	flagellar basal body L-ring protein
2167	 48.92	0	2342388..2343176	-	262	15642194	flgG	VC2195	-	flagellar basal body rod protein FlgG
2168	 51.60	0	2343196..2343945	-	249	15642195	flgF	VC2196	-	flagellar basal body rod protein FlgF
2169	 47.43	0	2344128..2345432	-	434	15642196	flgE	VC2197	-	flagellar hook protein FlgE
2170	 48.16	0	2345461..2346168	-	235	15642197	flgD	VC2198	-	flagellar basal body rod modification protein
2171	 46.28	0	2346186..2346602	-	138	15642198	flgC	VC2199	-	flagellar basal body rod protein FlgC
2172	 48.99	0	2346607..2347002	-	131	15642199	flgB	VC2200	-	flagellar basal body rod protein FlgB
2173	 46.38	0	2347222..2348049	-	275	15642200	-	VC2201	-	chemotaxis protein methyltransferase CheR
2174	 44.01	0	2348060..2348986	-	308	15642201	-	VC2202	-	chemotaxis protein CheV
2175	 45.70	0	2349043..2349810	+	255	15642202	flgA	VC2203	-	flagellar basal body P-ring biosynthesis protein FlgA
2176	 49.07	0	2349941..2350264	+	107	15642203	-	VC2204	-	negative regulator of flagellin synthesis FlgM, putative
2177	 44.91	0	2350362..2350793	+	143	15642204	-	VC2205	-	hypothetical protein
2178	 50.00	0	2350903..2351340	-	145	15642205	-	VC2206	-	hypothetical protein
2179	 47.98	0	2351348..2352016	-	222	15642206	-	VC2207	-	hypothetical protein
2180	 47.62	0	2352144..2353277	+	377	15642207	-	VC2208	-	hypothetical protein
2181	 49.58	0	2353407..2360647	-	2413	15642774	vibF	VC2209	-	nonribosomal peptide synthetase VibF
2182	 45.83	0	2360905..2361720	-	271	15642208	-	VC2210	-	vibriobactin utilization protein ViuB
2183	 46.27	0	2362024..2364087	-	687	15642209	-	VC2211	-	ferric vibriobactin receptor
2184	 43.35	0	2364507..2365205	+	232	15642210	-	VC2212	-	hypothetical protein
2185	 47.72	0	2365293..2366258	-	321	15642211	-	VC2213	-	outer membrane protein OmpA
2186	 48.50	0	2366554..2368083	-	509	15642212	gltX	VC2214	-	glutamyl-tRNA synthetase
2187	 51.02	0	2368152..2370899	+	915	15642213	-	VC2215	-	cation transporter E1-E2 family ATPase
2188	 46.80	0	2370896..2371348	+	150	15642214	-	VC2216	-	hypothetical protein
2189	 49.55	0	2371485..2374136	-	883	15642215	-	VC2217	-	beta-N-acetylhexosaminidase
2190	 42.11	-1	2374169..2374282	+	37	15642216	-	VC2218	-	hypothetical protein
2191	 45.30	0	2374364..2374480	-	38	15642217	-	VC2219	-	hypothetical protein
2192	 47.27	0	2374553..2375449	+	298	15642218	-	VC2220	-	hypothetical protein
2193	 43.26	0	2375930..2376070	+	46	15642219	-	VC2221	-	hypothetical protein
2194	 49.57	0	2376252..2376830	+	192	15642220	-	VC2222	-	hypothetical protein
2195	 47.41	0	2376860..2377882	+	340	15642221	-	VC2223	-	pseudouridine synthase family 1 protein
2196	 45.16	0	2377980..2379518	-	512	15642222	-	VC2224	-	GGDEF family protein
2197	 46.41	0	2379749..2380375	-	208	15642223	upp	VC2225	-	uracil phosphoribosyltransferase
2198	 50.14	0	2380542..2381582	+	346	15642224	-	VC2226	-	phosphoribosylaminoimidazole synthetase
2199	 48.51	0	2381585..2382223	+	212	15642225	purN	VC2227	-	phosphoribosylglycinamide formyltransferase
2200	 39.81	-1	2382242..2382349	+	35	15642226	-	VC2228	-	hypothetical protein
2201	 50.24	0	2382364..2383209	-	281	15642227	-	VC2229	-	hypothetical protein
2202	 45.66	0	2383272..2383847	-	191	15642228	gmhA	VC2230	-	phosphoheptose isomerase
2203	 50.31	0	2384165..2386609	+	814	15642229	fadE	VC2231	-	acyl-CoA dehydrogenase
2204	 47.30	0	2386756..2388015	-	419	15642230	-	VC2232	-	hypothetical protein
2205	 47.58	0	2388024..2388767	-	247	15642231	-	VC2233	-	DNA polymerase III subunit epsilon
2206	 52.87	+1	2388824..2389294	+	156	15642232	rnhA	VC2234	-	ribonuclease H
2207	 45.39	0	2389365..2390102	-	245	15642233	-	VC2235	-	hypothetical protein
2208	 49.41	0	2390140..2390898	+	252	15642234	-	VC2236	-	hydroxyacylglutathione hydrolase GloB, putative
2209	 49.66	0	2390970..2392568	+	532	15642235	-	VC2237	-	membrane-bound lytic murein transglycosylase D
2210	 47.87	0	2392585..2393430	-	281	15642236	-	VC2238	-	hypothetical protein
2211	 47.54	0	2393498..2393842	-	114	15642237	-	VC2239	-	nitrogen regulatory protein P-II
2212	 44.76	0	2393996..2394520	-	174	15642238	-	VC2240	-	decarboxylase
2213	 51.54	0	2394897..2395220	-	107	15642239	-	VC2241	-	cytochrome c554
2214	 52.31	+1	2395256..2396578	-	440	15642240	-	VC2242	-	mesJ protein
2215	 46.67	0	2396546..2396650	+	34	15642241	-	VC2243	-	hypothetical protein
2216	 50.00	0	2396718..2397677	-	319	15642242	-	VC2244	-	acetyl-CoA carboxylase carboxyltransferase subunit alpha
2217	 50.73	0	2397732..2401226	-	1164	15642243	dnaE	VC2245	-	DNA polymerase III subunit alpha
2218	 51.53	0	2401250..2401870	-	206	15642244	rnhB	VC2246	-	ribonuclease HII
2219	 51.84	+1	2401895..2403034	-	379	15642245	lpxB	VC2247	-	lipid-A-disaccharide synthase
2220	 49.56	0	2403195..2403983	-	262	15642246	-	VC2248	-	UDP-N-acetylglucosamine acyltransferase
2221	 44.81	0	2403985..2404446	-	153	15642247	fabZ	VC2249	-	(3R)-hydroxymyristoyl-ACP dehydratase
2222	 49.24	0	2404522..2405577	-	351	15642248	lpxD	VC2250	-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase
2223	 44.71	0	2405587..2406096	-	169	15642249	-	VC2251	-	outer membrane protein OmpH
2224	 47.76	0	2406111..2408522	-	803	15642250	-	VC2252	-	outer membrane protein assembly factor YaeT
2225	 48.64	0	2408571..2409929	-	452	15642251	-	VC2253	-	hypothetical protein
2226	 50.79	0	2409926..2411134	-	402	15642252	-	VC2254	-	1-deoxy-D-xylulose 5-phosphate reductoisomerase
2227	 48.16	0	2411183..2412025	-	280	15642253	-	VC2255	-	phosphatidate cytidylyltransferase
2228	 46.17	0	2412043..2412813	-	256	15642254	-	VC2256	-	undecaprenyl diphosphate synthase
2229	 47.31	0	2412887..2413444	-	185	15642255	frr	VC2257	-	ribosome recycling factor
2230	 49.04	0	2413498..2414229	-	243	15642256	pyrH	VC2258	-	uridylate kinase
2231	 48.16	0	2414417..2415259	-	280	15642257	tsf	VC2259	-	elongation factor Ts
2232	 47.33	0	2415391..2416119	-	242	15642258	rpsB	VC2260	-	30S ribosomal protein S2
2233	 46.86	0	2416460..2417302	+	280	15642259	-	VC2261	-	methionine aminopeptidase
2234	 49.28	0	2417392..2420037	+	881	15642260	-	VC2262	-	PII uridylyl-transferase
2235	 43.43	0	2420112..2420210	-	32	15642261	-	VC2263	-	hypothetical protein
2236	 39.61	-1	2420283..2420696	+	137	15642262	-	VC2264	-	hypothetical protein
2237	 48.82	0	2420737..2421246	-	169	15642263	-	VC2265	-	phosphatidylglycerophosphatase A
2238	 50.35	0	2421243..2422247	-	334	15642264	-	VC2266	-	thiamine monophosphate kinase
2239	 46.92	0	2422308..2422778	-	156	15642265	nusB	VC2267	-	transcription antitermination protein NusB
2240	 46.92	0	2422778..2423248	-	156	161581993	ribH	VC2268	-	riboflavin synthase subunit beta
2241	 51.44	0	2423513..2424622	-	369	15642267	-	VC2269	-	3,4-dihydroxy-2-butanone 4-phosphate synthase/GTP cyclohydrolase II
2242	 48.78	0	2424663..2425316	-	217	15642268	-	VC2270	-	riboflavin synthase subunit alpha
2243	 51.90	+1	2425321..2426424	-	367	15642269	-	VC2271	-	riboflavin-specific deaminase
2244	 48.00	0	2426450..2426899	-	149	161581992	-	VC2272	-	transcriptional regulator NrdR
2245	 52.07	+1	2426999..2428252	-	417	15642271	proA	VC2273	-	gamma-glutamyl phosphate reductase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.