IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
2059	 49.22	0	2245407..2246621	-	404	15642086	-	VC2086	-	dihydrolipoamide acetyltransferase
2060	 50.23	0	2246650..2249460	-	936	15642087	kgd	VC2087	-	alpha-ketoglutarate decarboxylase
2061	 44.30	0	2249549..2250259	-	236	15642088	sdhB	VC2088	-	succinate dehydrogenase iron-sulfur subunit
2062	 49.41	0	2250274..2252040	-	588	15642089	sdhA	VC2089	-	succinate dehydrogenase flavoprotein subunit
2063	 43.48	0	2252041..2252385	-	114	15642090	-	VC2090	-	succinate dehydrogenase, hydrophobic membrane anchor protein
2064	 48.09	0	2252379..2252771	-	130	15642091	sdhC	VC2091	-	succinate dehydrogenase cytochrome b556 large membrane subunit
2065	 46.84	0	2253161..2254456	+	431	15642092	gltA	VC2092	-	type II citrate synthase
2066	 45.65	0	2254508..2255278	-	256	15642093	-	VC2093	-	hypothetical protein
2067	 44.06	0	2255331..2256104	+	257	15642094	-	VC2094	-	hypothetical protein
2068	 48.82	0	2256154..2257800	-	548	15642095	-	VC2095	-	phosphoglucomutase
2069	 46.63	0	2257909..2258442	-	177	15642096	-	VC2096	-	replication initiation regulator SeqA
2070	 47.67	0	2258535..2259308	+	257	15642097	-	VC2097	-	esterase/lipase YbfF, putative
2071	 45.50	0	2259404..2259625	+	73	15642098	-	VC2098	-	hypothetical protein
2072	 46.40	0	2259674..2260201	+	175	15642099	-	VC2099	-	flavodoxin FldA
2073	 50.29	0	2260275..2260964	-	229	15642100	-	VC2100	-	hypothetical protein
2074	 48.07	0	2260970..2261410	-	146	15642101	-	VC2101	-	hypothetical protein
2075	 36.96	-2	2261373..2261510	-	45	15642102	-	VC2102	-	hypothetical protein
2076	 50.51	0	2261526..2262404	+	292	15642103	-	VC2103	-	LysR family transcriptional regulator
2077	 47.62	0	2262408..2262617	-	69	15642104	-	VC2104	-	hypothetical protein
2078	 47.20	0	2262535..2262909	-	124	15642105	-	VC2105	-	hypothetical protein
2079	 43.93	0	2263275..2263727	+	150	15642106	fur	VC2106	-	ferric uptake regulator
2080	 49.36	0	2263809..2264825	-	338	15642107	-	VC2107	-	aspartate-semialdehyde dehydrogenase
2081	 49.91	0	2264806..2265969	-	387	15642108	-	VC2108	-	erythronate-4-phosphate dehydrogenase
2082	 51.56	0	2267483..2269507	+	674	15642109	mnmC	VC2110	-	5-methylaminomethyl-2-thiouridine methyltransferase
2083	 50.57	0	2269586..2270113	-	175	15642110	-	VC2111	-	hypothetical protein
2084	 51.89	+1	2270321..2270584	-	87	15642111	-	VC2112	-	hypothetical protein
2085	 47.65	0	2270623..2271153	-	176	15642112	-	VC2113	-	hypothetical protein
2086	 43.59	0	2271344..2271460	-	38	15642113	-	VC2114	-	hypothetical protein
2087	 52.24	+1	2271517..2272140	+	207	15642114	-	VC2115	-	hypothetical protein
2088	 51.01	0	2272222..2273307	-	361	15642115	-	VC2116	-	chorismate synthase
2089	 46.67	0	2273405..2273629	+	74	15642116	-	VC2117	-	hypothetical protein
2090	 49.31	0	2273537..2274481	-	314	15642117	-	VC2118	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
2091	 50.09	0	2274536..2275096	+	186	15642118	-	VC2119	-	hypothetical protein
2092	 50.49	0	2275104..2276234	-	376	15642119	flhB	VC2120	-	flagellar biosynthesis protein FlhB
2093	 49.81	0	2276244..2277026	-	260	15642120	fliR	VC2121	-	flagellar biosynthesis protein FliR
2094	 45.19	0	2277035..2277304	-	89	15642121	fliQ	VC2122	-	flagellar biosynthesis protein FliQ
2095	 47.89	0	2277317..2278216	-	299	15642122	fliP	VC2123	-	flagellar biosynthesis protein FliP
2096	 50.51	0	2278194..2278583	-	129	15642123	-	VC2124	-	flagellar protein FliO
2097	 50.60	0	2278587..2279003	-	138	15642124	fliN	VC2125	-	flagellar motor switch protein
2098	 49.05	0	2279068..2280117	-	349	15642125	fliM	VC2126	-	flagellar motor switch protein FliM
2099	 51.39	0	2280125..2280628	-	167	15642126	fliL	VC2127	-	flagellar basal body-associated protein FliL
2100	 53.04	+1	2280663..2282687	-	674	15642127	-	VC2128	-	flagellar hook-length control protein FliK, putative
2101	 46.06	0	2282851..2283345	-	164	15642128	fliJ	VC2129	-	flagellar biosynthesis chaperone
2102	 52.80	+1	2283309..2284628	-	439	15642129	fliI	VC2130	-	flagellum-specific ATP synthase
2103	 52.28	+1	2284632..2285444	-	270	15642130	fliH	VC2131	-	flagellar assembly protein H
2104	 49.09	0	2285525..2286571	-	348	15642131	fliG	VC2132	-	flagellar motor switch protein G
2105	 50.37	0	2286564..2288306	-	580	15642132	fliF	VC2133	-	flagellar MS-ring protein
2106	 45.19	0	2288322..2288633	-	103	161581995	fliE	VC2134	-	flagellar hook-basal body protein FliE
2107	 50.28	0	2288709..2290148	-	479	15642134	-	VC2135	-	sigma-54 dependent response regulator
2108	 50.85	0	2290145..2291200	-	351	15642135	-	VC2136	-	sensory box sensor histidine kinase
2109	 49.90	0	2291312..2292778	-	488	15642136	-	VC2137	-	sigma-54 dependent transcriptional activator
2110	 46.23	0	2293010..2293420	-	136	15642137	fliS	VC2138	-	flagellar protein FliS
2111	 41.90	-1	2293431..2293745	-	104	15642138	-	VC2139	-	flagellar rod protein FlaI, putative
2112	 51.52	0	2293738..2295738	-	666	15642139	fliD	VC2140	-	flagellar capping protein
2113	 48.48	0	2295760..2296221	-	153	15642140	-	VC2141	-	flagellar protein FlaG
2114	 50.40	0	2296295..2297425	-	376	15642141	-	VC2142	-	flagellin
2115	 48.68	0	2297661..2298794	-	377	15642142	-	VC2143	-	flagellin
2116	 49.52	0	2299084..2300220	-	378	15642143	-	VC2144	-	flagellin
2117	 48.84	0	2300344..2301252	-	302	15642144	-	VC2145	-	tyrA protein
2118	 48.39	0	2301318..2301782	-	154	15642145	-	VC2146	-	hypothetical protein
2119	 45.10	0	2301926..2302282	+	118	15642146	-	VC2147	-	hypothetical protein
2120	 49.49	0	2302258..2302356	-	32	15642147	-	VC2148	-	hypothetical protein
2121	 49.31	0	2302349..2302636	-	95	15642148	-	VC2149	-	hypothetical protein
2122	 45.45	0	2302839..2303234	+	131	15642149	-	VC2150	-	hypothetical protein
2123	 41.67	-1	2303200..2303295	-	31	15642150	-	VC2151	-	hypothetical protein
2124	 51.59	0	2303265..2304398	+	377	15642151	-	VC2152	-	succinyl-diaminopimelate desuccinylase
2125	 47.20	0	2304326..2305075	+	249	15642152	-	VC2153	-	D,D-carboxypeptidase-related protein
2126	 45.78	0	2305065..2305289	+	74	15642153	-	VC2154	-	hypothetical protein
2127	 42.71	-1	2305273..2305368	-	31	15642154	-	VC2155	-	hypothetical protein
2128	 49.41	0	2305382..2306401	-	339	15642155	-	VC2156	-	lipoprotein
2129	 48.58	0	2306459..2307337	-	292	15642156	dapA	VC2157	-	dihydrodipicolinate synthase
2130	 42.86	-1	2307501..2307605	+	34	15642157	-	VC2158	-	hypothetical protein
2131	 45.86	0	2307615..2308157	+	180	15642158	-	VC2159	-	glycine cleavage system transcriptional repressor, putative
2132	 45.51	0	2308172..2308639	+	155	15642159	bcp	VC2160	-	thioredoxin-dependent thiol peroxidase
2133	 48.24	0	2308741..2310612	-	623	15642160	-	VC2161	-	methyl-accepting chemotaxis protein
2134	 47.70	0	2310803..2311867	-	354	15642161	-	VC2162	-	permease PerM, putative
2135	 48.52	0	2311860..2312096	-	78	15642162	-	VC2163	-	hypothetical protein
2136	 50.03	0	2312280..2313734	+	484	15642163	-	VC2164	-	hypothetical protein
2137	 47.58	0	2313757..2314107	+	116	15642164	-	VC2165	-	arsenate reductase
2138	 51.87	+1	2314104..2314664	+	186	15642165	-	VC2166	-	Trp repressor-binding protein
2139	 48.86	0	2314667..2315104	+	145	15642166	-	VC2167	-	hypothetical protein
2140	 50.04	0	2315311..2316459	-	382	15642167	-	VC2168	-	hypothetical protein
2141	 45.05	0	2316513..2316623	-	36	15642168	-	VC2169	-	hypothetical protein
2142	 39.64	-1	2316596..2316706	-	36	15642169	-	VC2170	-	hypothetical protein
2143	 52.39	+1	2316680..2317933	+	417	15642170	-	VC2171	-	uracil permease
2144	 47.20	0	2318004..2318486	-	160	15642171	-	VC2172	-	hypothetical protein
2145	 49.55	0	2318504..2318614	-	36	15642172	-	VC2173	-	hypothetical protein
2146	 48.19	0	2318621..2320282	-	553	15642173	ushA	VC2174	-	bifunctional UDP-sugar hydrolase/5'-nucleotidase periplasmic precursor
2147	 50.47	0	2320824..2321675	-	283	15642174	-	VC2175	-	2-dehydro-3-deoxyphosphooctonate aldolase
2148	 47.48	0	2321695..2322507	-	270	15642175	-	VC2176	-	hypothetical protein
2149	 46.09	0	2322523..2322906	-	127	15642176	-	VC2177	-	hypothetical protein
2150	 51.92	+1	2322906..2323766	-	286	15642177	-	VC2178	-	hemK protein
2151	 50.32	0	2323770..2324858	-	362	15642178	prfA	VC2179	-	peptide chain release factor 1
2152	 50.08	0	2324888..2326147	-	419	15642179	hemA	VC2180	-	glutamyl-tRNA reductase
2153	 46.23	0	2326288..2326923	+	211	15642180	lolB	VC2181	-	outer membrane lipoprotein LolB
2154	 51.01	0	2326905..2327792	+	295	15642181	-	VC2182	-	4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
2155	 49.84	0	2327823..2328767	+	314	15642182	-	VC2183	-	ribose-phosphate pyrophosphokinase
2156	 48.22	0	2328936..2329526	+	196	15642183	-	VC2184	-	peptidyl-tRNA hydrolase
2157	 48.63	0	2329537..2330628	+	363	161581994	-	VC2185	-	translation-associated GTPase
2158	 43.18	0	2332845..2332976	+	43	15642185	-	VC2186	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.