version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 2014 44.61 0 2196041..2197042 - 333 15642041 - VC2039 - nucleoid-associated protein NdpA 2015 40.74 -1 2197127..2197342 + 71 15642042 - VC2040 - hypothetical protein 2016 45.76 0 2197377..2199179 + 600 15642043 - VC2041 - hypothetical protein 2017 49.62 0 2199637..2200557 - 306 15642044 - VC2042 - histone deacetylase/AcuC/AphA family protein 2018 49.13 0 2200578..2202521 - 647 15642045 - VC2043 - DNA topoisomerase III 2019 48.05 0 2202606..2202938 - 110 15642046 - VC2044 - hypothetical protein 2020 47.35 0 2203190..2203774 + 194 15642047 - VC2045 - superoxide dismutase, Fe 2021 48.79 0 2203856..2204392 + 178 15642048 - VC2046 - hypothetical protein 2022 46.70 0 2204761..2205441 + 226 15642049 - VC2047 - short chain dehydrogenase 2023 47.32 0 2205454..2206218 - 254 15642050 - VC2048 - vacJ lipoprotein 2024 45.05 0 2207961..2208515 - 184 15642051 - VC2051 - thiol:disulfide interchange protein DsbE 2025 49.85 0 2208516..2210471 - 651 15642052 - VC2052 - cytochrome c-type biogenesis protein CcmF 2026 47.83 0 2210468..2210950 - 160 15642053 - VC2053 - cytochrome c-type biogenesis protein CcmE 2027 46.38 0 2210947..2211153 - 68 15642054 - VC2054 - heme exporter protein D 2028 50.46 0 2211153..2211905 - 250 15642055 - VC2055 - heme exporter protein C 2029 49.48 0 2211996..2212664 - 222 15642056 - VC2056 - heme exporter protein B 2030 47.12 0 2212661..2213284 - 207 15642057 - VC2057 - cytochrome c biogenesis protein CcmA 2031 47.42 0 2213658..2214161 - 167 15642058 - VC2058 - hypothetical protein 2032 45.90 0 2214137..2214661 - 174 15642059 - VC2059 - purine-binding chemotaxis protein CheW 2033 46.80 0 2214670..2215686 - 338 15642060 - VC2060 - hypothetical protein 2034 46.20 0 2215679..2216455 - 258 15642061 - VC2061 - ParA family protein 2035 49.03 0 2216465..2217598 - 377 15642062 - VC2062 - chemotaxis-specific methylesterase 2036 48.85 0 2217625..2219982 - 785 15642063 - VC2063 - chemotaxis protein CheA 2037 45.28 0 2219992..2220711 - 239 15642064 - VC2064 - chemotaxis protein CheZ 2038 42.24 -1 2220767..2221159 - 130 15642065 - VC2065 - chemotaxis protein CheY 2039 45.44 0 2221181..2221915 - 244 15642066 fliA VC2066 - flagellar biosynthesis sigma factor 2040 47.77 0 2221908..2222849 - 313 15642067 - VC2067 - MinD-related protein 2041 50.27 0 2222809..2224296 - 495 15642068 flhF VC2068 - flagellar biosynthesis regulator FlhF 2042 49.95 0 2224331..2226424 - 697 15642069 flhA VC2069 - flagellar biosynthesis protein FlhA 2043 49.37 0 2226756..2227229 - 157 15642070 - VC2070 - phosphohistidine phosphatase 2044 41.03 -1 2227222..2227338 + 38 15642071 - VC2071 - hypothetical protein 2045 47.59 0 2227373..2230192 + 939 15642072 - VC2072 - peptidase insulinase family protein 2046 49.41 0 2230189..2230785 - 198 15642073 - VC2073 - hypothetical protein 2047 48.67 0 2230919..2232718 + 599 15642074 argS VC2074 - arginyl-tRNA synthetase 2048 49.32 0 2232809..2233252 + 147 15642075 - VC2075 - histidine triad family protein 2049 48.48 0 2233514..2233744 - 76 15642076 - VC2076 - hypothetical protein 2050 46.90 0 2233741..2236017 - 758 15642077 - VC2077 - ferrous iron transport protein B 2051 47.62 0 2236014..2236244 - 76 15642078 - VC2078 - ferrous iron transport protein A 2052 38.89 -2 2236868..2236975 + 35 15642079 - VC2079 - hypothetical protein 2053 44.12 0 2237016..2240381 - 1121 15642080 - VC2080 - AraC/XylS family transcriptional regulator 2054 46.98 0 2240563..2241456 - 297 15642081 - VC2081 - zinc ABC transporter, periplasmic zinc-binding protein 2055 46.26 0 2241531..2242319 + 262 15642082 - VC2082 - zinc ABC transporter, ATP-binding protein 2056 49.81 0 2242312..2243094 + 260 15642083 - VC2083 - zinc ABC transporter, permease protein 2057 48.57 0 2243201..2244073 - 290 15642084 - VC2084 - succinyl-CoA synthetase subunit alpha 2058 47.47 0 2244073..2245239 - 388 15642085 sucC VC2085 - succinyl-CoA synthetase subunit beta 2059 49.22 0 2245407..2246621 - 404 15642086 - VC2086 - dihydrolipoamide acetyltransferase 2060 50.23 0 2246650..2249460 - 936 15642087 kgd VC2087 - alpha-ketoglutarate decarboxylase 2061 44.30 0 2249549..2250259 - 236 15642088 sdhB VC2088 - succinate dehydrogenase iron-sulfur subunit 2062 49.41 0 2250274..2252040 - 588 15642089 sdhA VC2089 - succinate dehydrogenase flavoprotein subunit 2063 43.48 0 2252041..2252385 - 114 15642090 - VC2090 - succinate dehydrogenase, hydrophobic membrane anchor protein 2064 48.09 0 2252379..2252771 - 130 15642091 sdhC VC2091 - succinate dehydrogenase cytochrome b556 large membrane subunit 2065 46.84 0 2253161..2254456 + 431 15642092 gltA VC2092 - type II citrate synthase 2066 45.65 0 2254508..2255278 - 256 15642093 - VC2093 - hypothetical protein 2067 44.06 0 2255331..2256104 + 257 15642094 - VC2094 - hypothetical protein 2068 48.82 0 2256154..2257800 - 548 15642095 - VC2095 - phosphoglucomutase 2069 46.63 0 2257909..2258442 - 177 15642096 - VC2096 - replication initiation regulator SeqA 2070 47.67 0 2258535..2259308 + 257 15642097 - VC2097 - esterase/lipase YbfF, putative 2071 45.50 0 2259404..2259625 + 73 15642098 - VC2098 - hypothetical protein 2072 46.40 0 2259674..2260201 + 175 15642099 - VC2099 - flavodoxin FldA 2073 50.29 0 2260275..2260964 - 229 15642100 - VC2100 - hypothetical protein 2074 48.07 0 2260970..2261410 - 146 15642101 - VC2101 - hypothetical protein 2075 36.96 -2 2261373..2261510 - 45 15642102 - VC2102 - hypothetical protein 2076 50.51 0 2261526..2262404 + 292 15642103 - VC2103 - LysR family transcriptional regulator 2077 47.62 0 2262408..2262617 - 69 15642104 - VC2104 - hypothetical protein 2078 47.20 0 2262535..2262909 - 124 15642105 - VC2105 - hypothetical protein 2079 43.93 0 2263275..2263727 + 150 15642106 fur VC2106 - ferric uptake regulator 2080 49.36 0 2263809..2264825 - 338 15642107 - VC2107 - aspartate-semialdehyde dehydrogenase 2081 49.91 0 2264806..2265969 - 387 15642108 - VC2108 - erythronate-4-phosphate dehydrogenase 2082 51.56 0 2267483..2269507 + 674 15642109 mnmC VC2110 - 5-methylaminomethyl-2-thiouridine methyltransferase 2083 50.57 0 2269586..2270113 - 175 15642110 - VC2111 - hypothetical protein 2084 51.89 +1 2270321..2270584 - 87 15642111 - VC2112 - hypothetical protein 2085 47.65 0 2270623..2271153 - 176 15642112 - VC2113 - hypothetical protein 2086 43.59 0 2271344..2271460 - 38 15642113 - VC2114 - hypothetical protein 2087 52.24 +1 2271517..2272140 + 207 15642114 - VC2115 - hypothetical protein 2088 51.01 0 2272222..2273307 - 361 15642115 - VC2116 - chorismate synthase 2089 46.67 0 2273405..2273629 + 74 15642116 - VC2117 - hypothetical protein 2090 49.31 0 2273537..2274481 - 314 15642117 - VC2118 - N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase 2091 50.09 0 2274536..2275096 + 186 15642118 - VC2119 - hypothetical protein 2092 50.49 0 2275104..2276234 - 376 15642119 flhB VC2120 - flagellar biosynthesis protein FlhB 2093 49.81 0 2276244..2277026 - 260 15642120 fliR VC2121 - flagellar biosynthesis protein FliR 2094 45.19 0 2277035..2277304 - 89 15642121 fliQ VC2122 - flagellar biosynthesis protein FliQ 2095 47.89 0 2277317..2278216 - 299 15642122 fliP VC2123 - flagellar biosynthesis protein FliP 2096 50.51 0 2278194..2278583 - 129 15642123 - VC2124 - flagellar protein FliO 2097 50.60 0 2278587..2279003 - 138 15642124 fliN VC2125 - flagellar motor switch protein 2098 49.05 0 2279068..2280117 - 349 15642125 fliM VC2126 - flagellar motor switch protein FliM 2099 51.39 0 2280125..2280628 - 167 15642126 fliL VC2127 - flagellar basal body-associated protein FliL 2100 53.04 +1 2280663..2282687 - 674 15642127 - VC2128 - flagellar hook-length control protein FliK, putative 2101 46.06 0 2282851..2283345 - 164 15642128 fliJ VC2129 - flagellar biosynthesis chaperone 2102 52.80 +1 2283309..2284628 - 439 15642129 fliI VC2130 - flagellum-specific ATP synthase 2103 52.28 +1 2284632..2285444 - 270 15642130 fliH VC2131 - flagellar assembly protein H 2104 49.09 0 2285525..2286571 - 348 15642131 fliG VC2132 - flagellar motor switch protein G 2105 50.37 0 2286564..2288306 - 580 15642132 fliF VC2133 - flagellar MS-ring protein 2106 45.19 0 2288322..2288633 - 103 161581995 fliE VC2134 - flagellar hook-basal body protein FliE 2107 50.28 0 2288709..2290148 - 479 15642134 - VC2135 - sigma-54 dependent response regulator 2108 50.85 0 2290145..2291200 - 351 15642135 - VC2136 - sensory box sensor histidine kinase 2109 49.90 0 2291312..2292778 - 488 15642136 - VC2137 - sigma-54 dependent transcriptional activator 2110 46.23 0 2293010..2293420 - 136 15642137 fliS VC2138 - flagellar protein FliS 2111 41.90 -1 2293431..2293745 - 104 15642138 - VC2139 - flagellar rod protein FlaI, putative 2112 51.52 0 2293738..2295738 - 666 15642139 fliD VC2140 - flagellar capping protein 2113 48.48 0 2295760..2296221 - 153 15642140 - VC2141 - flagellar protein FlaG 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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