IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1991	 48.36	0	2170246..2170884	-	212	15642018	tdk	VC2016	-	thymidylate kinase
1992	 46.41	0	2170881..2171897	-	338	15642019	-	VC2017	-	hypothetical protein
1993	 47.76	0	2171894..2172697	-	267	161581997	-	VC2018	-	4-amino-4-deoxychorismate lyase
1994	 50.12	0	2172775..2174019	-	414	15642021	-	VC2019	-	3-oxoacyl-(acyl carrier protein) synthase II
1995	 43.46	0	2174108..2174344	-	78	161581996	acpP	VC2020	-	acyl carrier protein
1996	 50.47	0	2174580..2175326	-	248	15642023	fabG	VC2021	-	3-ketoacyl-(acyl-carrier-protein) reductase
1997	 48.99	0	2175342..2176280	-	312	15642024	-	VC2022	-	acyl carrier protein S-malonyltransferase
1998	 49.53	0	2176335..2177285	-	316	15642025	-	VC2023	-	3-oxoacyl-(acyl carrier protein) synthase III
1999	 48.34	0	2177291..2178316	-	341	15642026	-	VC2024	-	putative glycerol-3-phosphate acyltransferase PlsX
2000	 48.54	0	2178326..2178496	-	56	15642027	rpmF	VC2025	-	50S ribosomal protein L32
2001	 41.90	-1	2178531..2179055	-	174	15642028	-	VC2026	-	hypothetical protein
2002	 45.02	0	2179203..2179784	+	193	15642029	maf	VC2027	-	Maf-like protein
2003	 48.95	0	2179885..2180832	-	315	15642030	-	VC2028	-	ribosomal large subunit pseudouridine synthase C
2004	 41.25	-1	2180746..2180985	+	79	15642031	-	VC2029	-	hypothetical protein
2005	 50.21	0	2181444..2184602	+	1052	15642032	-	VC2030	-	ribonuclease E
2006	 49.23	0	2184950..2186515	+	521	15642033	-	VC2031	-	sulfate permease family protein
2007	 50.23	0	2186633..2187508	+	291	15642034	-	VC2032	-	hypothetical protein
2008	 48.72	0	2187618..2190302	-	894	15642035	-	VC2033	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2009	 25.93	-2	2190523..2190630	+	35	15642036	-	VC2034	-	hypothetical protein
2010	 48.51	0	2190929..2191567	+	212	15642037	-	VC2035	-	hypothetical protein
2011	 49.69	0	2191657..2192769	-	370	15642038	-	VC2036	-	aspartate-semialdehyde dehydrogenase
2012	 47.58	0	2193194..2194639	+	481	15642039	-	VC2037	-	Na+/H+ antiporter
2013	 46.75	0	2194664..2195878	-	404	15642040	-	VC2038	-	hypothetical protein
2014	 44.61	0	2196041..2197042	-	333	15642041	-	VC2039	-	nucleoid-associated protein NdpA
2015	 40.74	-1	2197127..2197342	+	71	15642042	-	VC2040	-	hypothetical protein
2016	 45.76	0	2197377..2199179	+	600	15642043	-	VC2041	-	hypothetical protein
2017	 49.62	0	2199637..2200557	-	306	15642044	-	VC2042	-	histone deacetylase/AcuC/AphA family protein
2018	 49.13	0	2200578..2202521	-	647	15642045	-	VC2043	-	DNA topoisomerase III
2019	 48.05	0	2202606..2202938	-	110	15642046	-	VC2044	-	hypothetical protein
2020	 47.35	0	2203190..2203774	+	194	15642047	-	VC2045	-	superoxide dismutase, Fe
2021	 48.79	0	2203856..2204392	+	178	15642048	-	VC2046	-	hypothetical protein
2022	 46.70	0	2204761..2205441	+	226	15642049	-	VC2047	-	short chain dehydrogenase
2023	 47.32	0	2205454..2206218	-	254	15642050	-	VC2048	-	vacJ lipoprotein
2024	 45.05	0	2207961..2208515	-	184	15642051	-	VC2051	-	thiol:disulfide interchange protein DsbE
2025	 49.85	0	2208516..2210471	-	651	15642052	-	VC2052	-	cytochrome c-type biogenesis protein CcmF
2026	 47.83	0	2210468..2210950	-	160	15642053	-	VC2053	-	cytochrome c-type biogenesis protein CcmE
2027	 46.38	0	2210947..2211153	-	68	15642054	-	VC2054	-	heme exporter protein D
2028	 50.46	0	2211153..2211905	-	250	15642055	-	VC2055	-	heme exporter protein C
2029	 49.48	0	2211996..2212664	-	222	15642056	-	VC2056	-	heme exporter protein B
2030	 47.12	0	2212661..2213284	-	207	15642057	-	VC2057	-	cytochrome c biogenesis protein CcmA
2031	 47.42	0	2213658..2214161	-	167	15642058	-	VC2058	-	hypothetical protein
2032	 45.90	0	2214137..2214661	-	174	15642059	-	VC2059	-	purine-binding chemotaxis protein CheW
2033	 46.80	0	2214670..2215686	-	338	15642060	-	VC2060	-	hypothetical protein
2034	 46.20	0	2215679..2216455	-	258	15642061	-	VC2061	-	ParA family protein
2035	 49.03	0	2216465..2217598	-	377	15642062	-	VC2062	-	chemotaxis-specific methylesterase
2036	 48.85	0	2217625..2219982	-	785	15642063	-	VC2063	-	chemotaxis protein CheA
2037	 45.28	0	2219992..2220711	-	239	15642064	-	VC2064	-	chemotaxis protein CheZ
2038	 42.24	-1	2220767..2221159	-	130	15642065	-	VC2065	-	chemotaxis protein CheY
2039	 45.44	0	2221181..2221915	-	244	15642066	fliA	VC2066	-	flagellar biosynthesis sigma factor
2040	 47.77	0	2221908..2222849	-	313	15642067	-	VC2067	-	MinD-related protein
2041	 50.27	0	2222809..2224296	-	495	15642068	flhF	VC2068	-	flagellar biosynthesis regulator FlhF
2042	 49.95	0	2224331..2226424	-	697	15642069	flhA	VC2069	-	flagellar biosynthesis protein FlhA
2043	 49.37	0	2226756..2227229	-	157	15642070	-	VC2070	-	phosphohistidine phosphatase
2044	 41.03	-1	2227222..2227338	+	38	15642071	-	VC2071	-	hypothetical protein
2045	 47.59	0	2227373..2230192	+	939	15642072	-	VC2072	-	peptidase insulinase family protein
2046	 49.41	0	2230189..2230785	-	198	15642073	-	VC2073	-	hypothetical protein
2047	 48.67	0	2230919..2232718	+	599	15642074	argS	VC2074	-	arginyl-tRNA synthetase
2048	 49.32	0	2232809..2233252	+	147	15642075	-	VC2075	-	histidine triad family protein
2049	 48.48	0	2233514..2233744	-	76	15642076	-	VC2076	-	hypothetical protein
2050	 46.90	0	2233741..2236017	-	758	15642077	-	VC2077	-	ferrous iron transport protein B
2051	 47.62	0	2236014..2236244	-	76	15642078	-	VC2078	-	ferrous iron transport protein A
2052	 38.89	-2	2236868..2236975	+	35	15642079	-	VC2079	-	hypothetical protein
2053	 44.12	0	2237016..2240381	-	1121	15642080	-	VC2080	-	AraC/XylS family transcriptional regulator
2054	 46.98	0	2240563..2241456	-	297	15642081	-	VC2081	-	zinc ABC transporter, periplasmic zinc-binding protein
2055	 46.26	0	2241531..2242319	+	262	15642082	-	VC2082	-	zinc ABC transporter, ATP-binding protein
2056	 49.81	0	2242312..2243094	+	260	15642083	-	VC2083	-	zinc ABC transporter, permease protein
2057	 48.57	0	2243201..2244073	-	290	15642084	-	VC2084	-	succinyl-CoA synthetase subunit alpha
2058	 47.47	0	2244073..2245239	-	388	15642085	sucC	VC2085	-	succinyl-CoA synthetase subunit beta
2059	 49.22	0	2245407..2246621	-	404	15642086	-	VC2086	-	dihydrolipoamide acetyltransferase
2060	 50.23	0	2246650..2249460	-	936	15642087	kgd	VC2087	-	alpha-ketoglutarate decarboxylase
2061	 44.30	0	2249549..2250259	-	236	15642088	sdhB	VC2088	-	succinate dehydrogenase iron-sulfur subunit
2062	 49.41	0	2250274..2252040	-	588	15642089	sdhA	VC2089	-	succinate dehydrogenase flavoprotein subunit
2063	 43.48	0	2252041..2252385	-	114	15642090	-	VC2090	-	succinate dehydrogenase, hydrophobic membrane anchor protein
2064	 48.09	0	2252379..2252771	-	130	15642091	sdhC	VC2091	-	succinate dehydrogenase cytochrome b556 large membrane subunit
2065	 46.84	0	2253161..2254456	+	431	15642092	gltA	VC2092	-	type II citrate synthase
2066	 45.65	0	2254508..2255278	-	256	15642093	-	VC2093	-	hypothetical protein
2067	 44.06	0	2255331..2256104	+	257	15642094	-	VC2094	-	hypothetical protein
2068	 48.82	0	2256154..2257800	-	548	15642095	-	VC2095	-	phosphoglucomutase
2069	 46.63	0	2257909..2258442	-	177	15642096	-	VC2096	-	replication initiation regulator SeqA
2070	 47.67	0	2258535..2259308	+	257	15642097	-	VC2097	-	esterase/lipase YbfF, putative
2071	 45.50	0	2259404..2259625	+	73	15642098	-	VC2098	-	hypothetical protein
2072	 46.40	0	2259674..2260201	+	175	15642099	-	VC2099	-	flavodoxin FldA
2073	 50.29	0	2260275..2260964	-	229	15642100	-	VC2100	-	hypothetical protein
2074	 48.07	0	2260970..2261410	-	146	15642101	-	VC2101	-	hypothetical protein
2075	 36.96	-2	2261373..2261510	-	45	15642102	-	VC2102	-	hypothetical protein
2076	 50.51	0	2261526..2262404	+	292	15642103	-	VC2103	-	LysR family transcriptional regulator
2077	 47.62	0	2262408..2262617	-	69	15642104	-	VC2104	-	hypothetical protein
2078	 47.20	0	2262535..2262909	-	124	15642105	-	VC2105	-	hypothetical protein
2079	 43.93	0	2263275..2263727	+	150	15642106	fur	VC2106	-	ferric uptake regulator
2080	 49.36	0	2263809..2264825	-	338	15642107	-	VC2107	-	aspartate-semialdehyde dehydrogenase
2081	 49.91	0	2264806..2265969	-	387	15642108	-	VC2108	-	erythronate-4-phosphate dehydrogenase
2082	 51.56	0	2267483..2269507	+	674	15642109	mnmC	VC2110	-	5-methylaminomethyl-2-thiouridine methyltransferase
2083	 50.57	0	2269586..2270113	-	175	15642110	-	VC2111	-	hypothetical protein
2084	 51.89	+1	2270321..2270584	-	87	15642111	-	VC2112	-	hypothetical protein
2085	 47.65	0	2270623..2271153	-	176	15642112	-	VC2113	-	hypothetical protein
2086	 43.59	0	2271344..2271460	-	38	15642113	-	VC2114	-	hypothetical protein
2087	 52.24	+1	2271517..2272140	+	207	15642114	-	VC2115	-	hypothetical protein
2088	 51.01	0	2272222..2273307	-	361	15642115	-	VC2116	-	chorismate synthase
2089	 46.67	0	2273405..2273629	+	74	15642116	-	VC2117	-	hypothetical protein
2090	 49.31	0	2273537..2274481	-	314	15642117	-	VC2118	-	N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.