version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1963 51.96 +1 2140351..2140656 - 101 15641990 - VC1988 - hypothetical protein 1964 52.66 +1 2140716..2141429 - 237 15641991 - VC1989 - hypothetical protein 1965 51.52 0 2141426..2143366 - 646 15641992 - VC1990 - ATP-dependent helicase DinG 1966 47.03 0 2143320..2143757 + 145 15641993 - VC1991 - hypothetical protein 1967 46.28 0 2143931..2144764 + 277 15641994 purU VC1992 - formyltetrahydrofolate deformylase 1968 51.77 +1 2144838..2146838 - 666 15641995 - VC1993 - 2,4-dienoyl-CoA reductase 1969 48.89 0 2147068..2148918 + 616 15641996 - VC1994 - protease IV 1970 49.51 0 2149035..2150048 + 337 15641997 ansA VC1995 - cytoplasmic asparaginase I 1971 48.26 0 2150146..2150433 - 95 15641998 - VC1996 - hypothetical protein 1972 45.58 0 2150537..2151361 + 274 15641999 - VC1997 - hypothetical protein 1973 44.37 0 2151522..2151965 - 147 15642000 - VC1998 - methionine sulfoxide reductase B 1974 36.05 -2 2151971..2152117 + 48 15642001 - VC1999 - hypothetical protein 1975 46.89 0 2152265..2153260 + 331 15642002 - VC2000 - glyceraldehyde-3-phosphate dehydrogenase 1976 49.16 0 2153408..2154298 + 296 15642003 - VC2001 - hypothetical protein 1977 48.76 0 2154733..2155737 + 334 15642004 - VC2002 - hypothetical protein 1978 48.11 0 2155892..2156710 + 272 161581998 rrmA VC2003 - 23S rRNA methyltransferase A 1979 48.36 0 2156731..2157708 + 325 15642006 - VC2004 - hypothetical protein 1980 47.90 0 2157848..2158204 + 118 15642007 - VC2005 - hypothetical protein 1981 43.17 0 2158278..2159222 - 314 15642008 - VC2006 - chemotaxis protein CheV 1982 46.06 0 2159327..2160544 - 405 15642009 - VC2007 - ROK family transcriptional regulator 1983 48.76 0 2160989..2162434 + 481 15642010 - VC2008 - pyruvate kinase II 1984 46.92 0 2162476..2163645 - 389 15642011 - VC2009 - hypothetical protein 1985 40.48 -1 2163652..2163777 - 41 15642012 - VC2010 - hypothetical protein 1986 45.18 0 2163877..2164467 + 196 15642013 - VC2011 - hypothetical protein 1987 45.83 0 2164851..2166434 + 527 15642014 - VC2012 - sodium-dependent transporter 1988 47.77 0 2166647..2168149 - 500 15642015 - VC2013 - glucose-specific PTS system IIBC components 1989 45.57 0 2168521..2169288 - 255 15642016 - VC2014 - hypothetical protein 1990 47.90 0 2169279..2170253 - 324 15642017 - VC2015 - DNA polymerase III subunit delta' 1991 48.36 0 2170246..2170884 - 212 15642018 tdk VC2016 - thymidylate kinase 1992 46.41 0 2170881..2171897 - 338 15642019 - VC2017 - hypothetical protein 1993 47.76 0 2171894..2172697 - 267 161581997 - VC2018 - 4-amino-4-deoxychorismate lyase 1994 50.12 0 2172775..2174019 - 414 15642021 - VC2019 - 3-oxoacyl-(acyl carrier protein) synthase II 1995 43.46 0 2174108..2174344 - 78 161581996 acpP VC2020 - acyl carrier protein 1996 50.47 0 2174580..2175326 - 248 15642023 fabG VC2021 - 3-ketoacyl-(acyl-carrier-protein) reductase 1997 48.99 0 2175342..2176280 - 312 15642024 - VC2022 - acyl carrier protein S-malonyltransferase 1998 49.53 0 2176335..2177285 - 316 15642025 - VC2023 - 3-oxoacyl-(acyl carrier protein) synthase III 1999 48.34 0 2177291..2178316 - 341 15642026 - VC2024 - putative glycerol-3-phosphate acyltransferase PlsX 2000 48.54 0 2178326..2178496 - 56 15642027 rpmF VC2025 - 50S ribosomal protein L32 2001 41.90 -1 2178531..2179055 - 174 15642028 - VC2026 - hypothetical protein 2002 45.02 0 2179203..2179784 + 193 15642029 maf VC2027 - Maf-like protein 2003 48.95 0 2179885..2180832 - 315 15642030 - VC2028 - ribosomal large subunit pseudouridine synthase C 2004 41.25 -1 2180746..2180985 + 79 15642031 - VC2029 - hypothetical protein 2005 50.21 0 2181444..2184602 + 1052 15642032 - VC2030 - ribonuclease E 2006 49.23 0 2184950..2186515 + 521 15642033 - VC2031 - sulfate permease family protein 2007 50.23 0 2186633..2187508 + 291 15642034 - VC2032 - hypothetical protein 2008 48.72 0 2187618..2190302 - 894 15642035 - VC2033 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2009 25.93 -2 2190523..2190630 + 35 15642036 - VC2034 - hypothetical protein 2010 48.51 0 2190929..2191567 + 212 15642037 - VC2035 - hypothetical protein 2011 49.69 0 2191657..2192769 - 370 15642038 - VC2036 - aspartate-semialdehyde dehydrogenase 2012 47.58 0 2193194..2194639 + 481 15642039 - VC2037 - Na+/H+ antiporter 2013 46.75 0 2194664..2195878 - 404 15642040 - VC2038 - hypothetical protein 2014 44.61 0 2196041..2197042 - 333 15642041 - VC2039 - nucleoid-associated protein NdpA 2015 40.74 -1 2197127..2197342 + 71 15642042 - VC2040 - hypothetical protein 2016 45.76 0 2197377..2199179 + 600 15642043 - VC2041 - hypothetical protein 2017 49.62 0 2199637..2200557 - 306 15642044 - VC2042 - histone deacetylase/AcuC/AphA family protein 2018 49.13 0 2200578..2202521 - 647 15642045 - VC2043 - DNA topoisomerase III 2019 48.05 0 2202606..2202938 - 110 15642046 - VC2044 - hypothetical protein 2020 47.35 0 2203190..2203774 + 194 15642047 - VC2045 - superoxide dismutase, Fe 2021 48.79 0 2203856..2204392 + 178 15642048 - VC2046 - hypothetical protein 2022 46.70 0 2204761..2205441 + 226 15642049 - VC2047 - short chain dehydrogenase 2023 47.32 0 2205454..2206218 - 254 15642050 - VC2048 - vacJ lipoprotein 2024 45.05 0 2207961..2208515 - 184 15642051 - VC2051 - thiol:disulfide interchange protein DsbE 2025 49.85 0 2208516..2210471 - 651 15642052 - VC2052 - cytochrome c-type biogenesis protein CcmF 2026 47.83 0 2210468..2210950 - 160 15642053 - VC2053 - cytochrome c-type biogenesis protein CcmE 2027 46.38 0 2210947..2211153 - 68 15642054 - VC2054 - heme exporter protein D 2028 50.46 0 2211153..2211905 - 250 15642055 - VC2055 - heme exporter protein C 2029 49.48 0 2211996..2212664 - 222 15642056 - VC2056 - heme exporter protein B 2030 47.12 0 2212661..2213284 - 207 15642057 - VC2057 - cytochrome c biogenesis protein CcmA 2031 47.42 0 2213658..2214161 - 167 15642058 - VC2058 - hypothetical protein 2032 45.90 0 2214137..2214661 - 174 15642059 - VC2059 - purine-binding chemotaxis protein CheW 2033 46.80 0 2214670..2215686 - 338 15642060 - VC2060 - hypothetical protein 2034 46.20 0 2215679..2216455 - 258 15642061 - VC2061 - ParA family protein 2035 49.03 0 2216465..2217598 - 377 15642062 - VC2062 - chemotaxis-specific methylesterase 2036 48.85 0 2217625..2219982 - 785 15642063 - VC2063 - chemotaxis protein CheA 2037 45.28 0 2219992..2220711 - 239 15642064 - VC2064 - chemotaxis protein CheZ 2038 42.24 -1 2220767..2221159 - 130 15642065 - VC2065 - chemotaxis protein CheY 2039 45.44 0 2221181..2221915 - 244 15642066 fliA VC2066 - flagellar biosynthesis sigma factor 2040 47.77 0 2221908..2222849 - 313 15642067 - VC2067 - MinD-related protein 2041 50.27 0 2222809..2224296 - 495 15642068 flhF VC2068 - flagellar biosynthesis regulator FlhF 2042 49.95 0 2224331..2226424 - 697 15642069 flhA VC2069 - flagellar biosynthesis protein FlhA 2043 49.37 0 2226756..2227229 - 157 15642070 - VC2070 - phosphohistidine phosphatase 2044 41.03 -1 2227222..2227338 + 38 15642071 - VC2071 - hypothetical protein 2045 47.59 0 2227373..2230192 + 939 15642072 - VC2072 - peptidase insulinase family protein 2046 49.41 0 2230189..2230785 - 198 15642073 - VC2073 - hypothetical protein 2047 48.67 0 2230919..2232718 + 599 15642074 argS VC2074 - arginyl-tRNA synthetase 2048 49.32 0 2232809..2233252 + 147 15642075 - VC2075 - histidine triad family protein 2049 48.48 0 2233514..2233744 - 76 15642076 - VC2076 - hypothetical protein 2050 46.90 0 2233741..2236017 - 758 15642077 - VC2077 - ferrous iron transport protein B 2051 47.62 0 2236014..2236244 - 76 15642078 - VC2078 - ferrous iron transport protein A 2052 38.89 -2 2236868..2236975 + 35 15642079 - VC2079 - hypothetical protein 2053 44.12 0 2237016..2240381 - 1121 15642080 - VC2080 - AraC/XylS family transcriptional regulator 2054 46.98 0 2240563..2241456 - 297 15642081 - VC2081 - zinc ABC transporter, periplasmic zinc-binding protein 2055 46.26 0 2241531..2242319 + 262 15642082 - VC2082 - zinc ABC transporter, ATP-binding protein 2056 49.81 0 2242312..2243094 + 260 15642083 - VC2083 - zinc ABC transporter, permease protein 2057 48.57 0 2243201..2244073 - 290 15642084 - VC2084 - succinyl-CoA synthetase subunit alpha 2058 47.47 0 2244073..2245239 - 388 15642085 sucC VC2085 - succinyl-CoA synthetase subunit beta 2059 49.22 0 2245407..2246621 - 404 15642086 - VC2086 - dihydrolipoamide acetyltransferase 2060 50.23 0 2246650..2249460 - 936 15642087 kgd VC2087 - alpha-ketoglutarate decarboxylase 2061 44.30 0 2249549..2250259 - 236 15642088 sdhB VC2088 - succinate dehydrogenase iron-sulfur subunit 2062 49.41 0 2250274..2252040 - 588 15642089 sdhA VC2089 - succinate dehydrogenase flavoprotein subunit 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.