IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1962	 50.41	0	2139777..2140385	-	202	15641989	-	VC1987	-	outer membrane lipoprotein Slp, putative
1963	 51.96	+1	2140351..2140656	-	101	15641990	-	VC1988	-	hypothetical protein
1964	 52.66	+1	2140716..2141429	-	237	15641991	-	VC1989	-	hypothetical protein
1965	 51.52	0	2141426..2143366	-	646	15641992	-	VC1990	-	ATP-dependent helicase DinG
1966	 47.03	0	2143320..2143757	+	145	15641993	-	VC1991	-	hypothetical protein
1967	 46.28	0	2143931..2144764	+	277	15641994	purU	VC1992	-	formyltetrahydrofolate deformylase
1968	 51.77	+1	2144838..2146838	-	666	15641995	-	VC1993	-	2,4-dienoyl-CoA reductase
1969	 48.89	0	2147068..2148918	+	616	15641996	-	VC1994	-	protease IV
1970	 49.51	0	2149035..2150048	+	337	15641997	ansA	VC1995	-	cytoplasmic asparaginase I
1971	 48.26	0	2150146..2150433	-	95	15641998	-	VC1996	-	hypothetical protein
1972	 45.58	0	2150537..2151361	+	274	15641999	-	VC1997	-	hypothetical protein
1973	 44.37	0	2151522..2151965	-	147	15642000	-	VC1998	-	methionine sulfoxide reductase B
1974	 36.05	-2	2151971..2152117	+	48	15642001	-	VC1999	-	hypothetical protein
1975	 46.89	0	2152265..2153260	+	331	15642002	-	VC2000	-	glyceraldehyde-3-phosphate dehydrogenase
1976	 49.16	0	2153408..2154298	+	296	15642003	-	VC2001	-	hypothetical protein
1977	 48.76	0	2154733..2155737	+	334	15642004	-	VC2002	-	hypothetical protein
1978	 48.11	0	2155892..2156710	+	272	161581998	rrmA	VC2003	-	23S rRNA methyltransferase A
1979	 48.36	0	2156731..2157708	+	325	15642006	-	VC2004	-	hypothetical protein
1980	 47.90	0	2157848..2158204	+	118	15642007	-	VC2005	-	hypothetical protein
1981	 43.17	0	2158278..2159222	-	314	15642008	-	VC2006	-	chemotaxis protein CheV
1982	 46.06	0	2159327..2160544	-	405	15642009	-	VC2007	-	ROK family transcriptional regulator
1983	 48.76	0	2160989..2162434	+	481	15642010	-	VC2008	-	pyruvate kinase II
1984	 46.92	0	2162476..2163645	-	389	15642011	-	VC2009	-	hypothetical protein
1985	 40.48	-1	2163652..2163777	-	41	15642012	-	VC2010	-	hypothetical protein
1986	 45.18	0	2163877..2164467	+	196	15642013	-	VC2011	-	hypothetical protein
1987	 45.83	0	2164851..2166434	+	527	15642014	-	VC2012	-	sodium-dependent transporter
1988	 47.77	0	2166647..2168149	-	500	15642015	-	VC2013	-	glucose-specific PTS system IIBC components
1989	 45.57	0	2168521..2169288	-	255	15642016	-	VC2014	-	hypothetical protein
1990	 47.90	0	2169279..2170253	-	324	15642017	-	VC2015	-	DNA polymerase III subunit delta'
1991	 48.36	0	2170246..2170884	-	212	15642018	tdk	VC2016	-	thymidylate kinase
1992	 46.41	0	2170881..2171897	-	338	15642019	-	VC2017	-	hypothetical protein
1993	 47.76	0	2171894..2172697	-	267	161581997	-	VC2018	-	4-amino-4-deoxychorismate lyase
1994	 50.12	0	2172775..2174019	-	414	15642021	-	VC2019	-	3-oxoacyl-(acyl carrier protein) synthase II
1995	 43.46	0	2174108..2174344	-	78	161581996	acpP	VC2020	-	acyl carrier protein
1996	 50.47	0	2174580..2175326	-	248	15642023	fabG	VC2021	-	3-ketoacyl-(acyl-carrier-protein) reductase
1997	 48.99	0	2175342..2176280	-	312	15642024	-	VC2022	-	acyl carrier protein S-malonyltransferase
1998	 49.53	0	2176335..2177285	-	316	15642025	-	VC2023	-	3-oxoacyl-(acyl carrier protein) synthase III
1999	 48.34	0	2177291..2178316	-	341	15642026	-	VC2024	-	putative glycerol-3-phosphate acyltransferase PlsX
2000	 48.54	0	2178326..2178496	-	56	15642027	rpmF	VC2025	-	50S ribosomal protein L32
2001	 41.90	-1	2178531..2179055	-	174	15642028	-	VC2026	-	hypothetical protein
2002	 45.02	0	2179203..2179784	+	193	15642029	maf	VC2027	-	Maf-like protein
2003	 48.95	0	2179885..2180832	-	315	15642030	-	VC2028	-	ribosomal large subunit pseudouridine synthase C
2004	 41.25	-1	2180746..2180985	+	79	15642031	-	VC2029	-	hypothetical protein
2005	 50.21	0	2181444..2184602	+	1052	15642032	-	VC2030	-	ribonuclease E
2006	 49.23	0	2184950..2186515	+	521	15642033	-	VC2031	-	sulfate permease family protein
2007	 50.23	0	2186633..2187508	+	291	15642034	-	VC2032	-	hypothetical protein
2008	 48.72	0	2187618..2190302	-	894	15642035	-	VC2033	-	bifunctional acetaldehyde-CoA/alcohol dehydrogenase
2009	 25.93	-2	2190523..2190630	+	35	15642036	-	VC2034	-	hypothetical protein
2010	 48.51	0	2190929..2191567	+	212	15642037	-	VC2035	-	hypothetical protein
2011	 49.69	0	2191657..2192769	-	370	15642038	-	VC2036	-	aspartate-semialdehyde dehydrogenase
2012	 47.58	0	2193194..2194639	+	481	15642039	-	VC2037	-	Na+/H+ antiporter
2013	 46.75	0	2194664..2195878	-	404	15642040	-	VC2038	-	hypothetical protein
2014	 44.61	0	2196041..2197042	-	333	15642041	-	VC2039	-	nucleoid-associated protein NdpA
2015	 40.74	-1	2197127..2197342	+	71	15642042	-	VC2040	-	hypothetical protein
2016	 45.76	0	2197377..2199179	+	600	15642043	-	VC2041	-	hypothetical protein
2017	 49.62	0	2199637..2200557	-	306	15642044	-	VC2042	-	histone deacetylase/AcuC/AphA family protein
2018	 49.13	0	2200578..2202521	-	647	15642045	-	VC2043	-	DNA topoisomerase III
2019	 48.05	0	2202606..2202938	-	110	15642046	-	VC2044	-	hypothetical protein
2020	 47.35	0	2203190..2203774	+	194	15642047	-	VC2045	-	superoxide dismutase, Fe
2021	 48.79	0	2203856..2204392	+	178	15642048	-	VC2046	-	hypothetical protein
2022	 46.70	0	2204761..2205441	+	226	15642049	-	VC2047	-	short chain dehydrogenase
2023	 47.32	0	2205454..2206218	-	254	15642050	-	VC2048	-	vacJ lipoprotein
2024	 45.05	0	2207961..2208515	-	184	15642051	-	VC2051	-	thiol:disulfide interchange protein DsbE
2025	 49.85	0	2208516..2210471	-	651	15642052	-	VC2052	-	cytochrome c-type biogenesis protein CcmF
2026	 47.83	0	2210468..2210950	-	160	15642053	-	VC2053	-	cytochrome c-type biogenesis protein CcmE
2027	 46.38	0	2210947..2211153	-	68	15642054	-	VC2054	-	heme exporter protein D
2028	 50.46	0	2211153..2211905	-	250	15642055	-	VC2055	-	heme exporter protein C
2029	 49.48	0	2211996..2212664	-	222	15642056	-	VC2056	-	heme exporter protein B
2030	 47.12	0	2212661..2213284	-	207	15642057	-	VC2057	-	cytochrome c biogenesis protein CcmA
2031	 47.42	0	2213658..2214161	-	167	15642058	-	VC2058	-	hypothetical protein
2032	 45.90	0	2214137..2214661	-	174	15642059	-	VC2059	-	purine-binding chemotaxis protein CheW
2033	 46.80	0	2214670..2215686	-	338	15642060	-	VC2060	-	hypothetical protein
2034	 46.20	0	2215679..2216455	-	258	15642061	-	VC2061	-	ParA family protein
2035	 49.03	0	2216465..2217598	-	377	15642062	-	VC2062	-	chemotaxis-specific methylesterase
2036	 48.85	0	2217625..2219982	-	785	15642063	-	VC2063	-	chemotaxis protein CheA
2037	 45.28	0	2219992..2220711	-	239	15642064	-	VC2064	-	chemotaxis protein CheZ
2038	 42.24	-1	2220767..2221159	-	130	15642065	-	VC2065	-	chemotaxis protein CheY
2039	 45.44	0	2221181..2221915	-	244	15642066	fliA	VC2066	-	flagellar biosynthesis sigma factor
2040	 47.77	0	2221908..2222849	-	313	15642067	-	VC2067	-	MinD-related protein
2041	 50.27	0	2222809..2224296	-	495	15642068	flhF	VC2068	-	flagellar biosynthesis regulator FlhF
2042	 49.95	0	2224331..2226424	-	697	15642069	flhA	VC2069	-	flagellar biosynthesis protein FlhA
2043	 49.37	0	2226756..2227229	-	157	15642070	-	VC2070	-	phosphohistidine phosphatase
2044	 41.03	-1	2227222..2227338	+	38	15642071	-	VC2071	-	hypothetical protein
2045	 47.59	0	2227373..2230192	+	939	15642072	-	VC2072	-	peptidase insulinase family protein
2046	 49.41	0	2230189..2230785	-	198	15642073	-	VC2073	-	hypothetical protein
2047	 48.67	0	2230919..2232718	+	599	15642074	argS	VC2074	-	arginyl-tRNA synthetase
2048	 49.32	0	2232809..2233252	+	147	15642075	-	VC2075	-	histidine triad family protein
2049	 48.48	0	2233514..2233744	-	76	15642076	-	VC2076	-	hypothetical protein
2050	 46.90	0	2233741..2236017	-	758	15642077	-	VC2077	-	ferrous iron transport protein B
2051	 47.62	0	2236014..2236244	-	76	15642078	-	VC2078	-	ferrous iron transport protein A
2052	 38.89	-2	2236868..2236975	+	35	15642079	-	VC2079	-	hypothetical protein
2053	 44.12	0	2237016..2240381	-	1121	15642080	-	VC2080	-	AraC/XylS family transcriptional regulator
2054	 46.98	0	2240563..2241456	-	297	15642081	-	VC2081	-	zinc ABC transporter, periplasmic zinc-binding protein
2055	 46.26	0	2241531..2242319	+	262	15642082	-	VC2082	-	zinc ABC transporter, ATP-binding protein
2056	 49.81	0	2242312..2243094	+	260	15642083	-	VC2083	-	zinc ABC transporter, permease protein
2057	 48.57	0	2243201..2244073	-	290	15642084	-	VC2084	-	succinyl-CoA synthetase subunit alpha
2058	 47.47	0	2244073..2245239	-	388	15642085	sucC	VC2085	-	succinyl-CoA synthetase subunit beta
2059	 49.22	0	2245407..2246621	-	404	15642086	-	VC2086	-	dihydrolipoamide acetyltransferase
2060	 50.23	0	2246650..2249460	-	936	15642087	kgd	VC2087	-	alpha-ketoglutarate decarboxylase
2061	 44.30	0	2249549..2250259	-	236	15642088	sdhB	VC2088	-	succinate dehydrogenase iron-sulfur subunit
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.