version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1912 46.43 0 2088527..2089198 + 223 15641939 - VC1937 - hypothetical protein 1913 46.00 0 2089288..2089737 + 149 15641940 - VC1938 - hypothetical protein 1914 47.50 0 2090031..2090651 + 206 15641941 - VC1939 - hypothetical protein 1915 47.96 0 2090698..2091360 - 220 15641942 - VC1940 - hypothetical protein 1916 46.99 0 2091673..2092968 - 431 15641943 - VC1941 - hypothetical protein 1917 49.79 0 2093523..2094458 + 311 15641944 - VC1942 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase 1918 50.54 0 2094433..2094525 + 30 15641945 - VC1943 - hypothetical protein 1919 48.03 0 2094741..2095604 + 287 15641946 - VC1944 - PvcB protein 1920 48.29 0 2095589..2097052 + 487 15641947 - VC1945 - hypothetical protein 1921 50.93 0 2097041..2097148 - 35 15641948 - VC1946 - hypothetical protein 1922 42.90 -1 2097183..2098112 - 309 15641949 - VC1947 - LysR family transcriptional regulator 1923 36.46 -2 2098271..2098462 + 63 15641950 - VC1948 - hypothetical protein 1924 44.39 0 2098432..2100258 + 608 15641951 - VC1949 - pvcA protein 1925 52.33 +1 2100348..2102795 - 815 15641952 - VC1950 - biotin sulfoxide reductase 1926 49.86 0 2102818..2103924 - 368 15641953 - VC1951 - cytochrome c-type protein YecK 1927 50.37 0 2104179..2106719 - 846 15641954 - VC1952 - chitinase 1928 48.93 0 2106983..2108200 - 405 15641955 - VC1953 - NupC family protein 1929 33.33 -2 2108248..2108349 + 33 15641956 - VC1954 - hypothetical protein 1930 50.32 0 2108531..2109478 - 315 15641957 - VC1955 - LysR family transcriptional regulator 1931 47.53 0 2109642..2110613 - 323 15641958 - VC1956 - lytic murein transglycosylase, putative 1932 43.37 0 2110638..2110946 - 102 15641959 - VC1957 - hypothetical protein 1933 42.06 -1 2110977..2111102 + 41 15641960 - VC1958 - hypothetical protein 1934 48.57 0 2111116..2111778 + 220 15641961 minC VC1959 - septum formation inhibitor 1935 48.98 0 2111781..2112611 + 276 15641962 - VC1960 - septum site-determining protein MinD 1936 47.73 0 2112616..2112879 + 87 15641963 minE VC1961 - cell division topological specificity factor MinE 1937 48.17 0 2113168..2113659 + 163 15641964 - VC1962 - lipoprotein 1938 45.98 0 2113726..2114223 - 165 15641965 - VC1963 - hypothetical protein 1939 48.86 0 2114204..2115079 - 291 15641966 - VC1964 - hypothetical protein 1940 44.67 0 2115273..2115863 + 196 15641967 - VC1965 - hypothetical protein 1941 49.60 0 2115867..2117747 + 626 15641968 - VC1966 - hypothetical protein 1942 43.84 0 2117923..2119977 + 684 15641969 - VC1967 - methyl-accepting chemotaxis protein 1943 43.41 0 2120030..2120575 - 181 15641970 - VC1968 - transcriptional regulator 1944 41.67 -1 2120587..2120682 - 31 15641971 - VC1969 - hypothetical protein 1945 51.80 +1 2120663..2121826 + 387 15641972 - VC1970 - benzoate transport protein 1946 53.11 +1 2121855..2123285 - 476 15641973 - VC1971 - O-succinylbenzoic acid--CoA ligase 1947 52.75 +1 2123261..2124259 - 332 15641974 - VC1972 - O-succinylbenzoate synthase 1948 53.29 +1 2124347..2125213 - 288 161581999 - VC1973 - naphthoate synthase 1949 50.76 0 2125238..2126029 - 263 15641976 - VC1974 - acyl-CoA thioester hydrolase YfbB 1950 53.36 +1 2126019..2127731 - 570 15641977 - VC1975 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 1951 52.75 +1 2127728..2129035 - 435 15641978 - VC1976 - menaquinone-specific isochorismate synthase 1952 49.88 0 2129250..2130464 + 404 15641979 - VC1977 - aminotransferase AlaT 1953 49.29 0 2130500..2131201 + 233 15641980 - VC1978 - hypothetical protein 1954 52.41 +1 2131258..2132583 + 441 15641981 - VC1979 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1955 51.24 0 2132577..2133179 - 200 15641982 - VC1980 - hypothetical protein 1956 52.47 +1 2133066..2133734 + 222 15641983 - VC1981 - hypothetical protein 1957 40.54 -1 2133691..2133801 + 36 15641984 - VC1982 - hypothetical protein 1958 48.59 0 2133810..2135657 - 615 15641985 - VC1983 - peptidase, putative 1959 50.09 0 2135870..2137015 - 381 15641986 - VC1984 - ribonuclease D 1960 50.62 0 2137101..2138801 - 566 15641987 - VC1985 - long-chain-fatty-acid--CoA ligase 1961 51.46 0 2138926..2139780 - 284 15641988 - VC1986 - hypothetical protein 1962 50.41 0 2139777..2140385 - 202 15641989 - VC1987 - outer membrane lipoprotein Slp, putative 1963 51.96 +1 2140351..2140656 - 101 15641990 - VC1988 - hypothetical protein 1964 52.66 +1 2140716..2141429 - 237 15641991 - VC1989 - hypothetical protein 1965 51.52 0 2141426..2143366 - 646 15641992 - VC1990 - ATP-dependent helicase DinG 1966 47.03 0 2143320..2143757 + 145 15641993 - VC1991 - hypothetical protein 1967 46.28 0 2143931..2144764 + 277 15641994 purU VC1992 - formyltetrahydrofolate deformylase 1968 51.77 +1 2144838..2146838 - 666 15641995 - VC1993 - 2,4-dienoyl-CoA reductase 1969 48.89 0 2147068..2148918 + 616 15641996 - VC1994 - protease IV 1970 49.51 0 2149035..2150048 + 337 15641997 ansA VC1995 - cytoplasmic asparaginase I 1971 48.26 0 2150146..2150433 - 95 15641998 - VC1996 - hypothetical protein 1972 45.58 0 2150537..2151361 + 274 15641999 - VC1997 - hypothetical protein 1973 44.37 0 2151522..2151965 - 147 15642000 - VC1998 - methionine sulfoxide reductase B 1974 36.05 -2 2151971..2152117 + 48 15642001 - VC1999 - hypothetical protein 1975 46.89 0 2152265..2153260 + 331 15642002 - VC2000 - glyceraldehyde-3-phosphate dehydrogenase 1976 49.16 0 2153408..2154298 + 296 15642003 - VC2001 - hypothetical protein 1977 48.76 0 2154733..2155737 + 334 15642004 - VC2002 - hypothetical protein 1978 48.11 0 2155892..2156710 + 272 161581998 rrmA VC2003 - 23S rRNA methyltransferase A 1979 48.36 0 2156731..2157708 + 325 15642006 - VC2004 - hypothetical protein 1980 47.90 0 2157848..2158204 + 118 15642007 - VC2005 - hypothetical protein 1981 43.17 0 2158278..2159222 - 314 15642008 - VC2006 - chemotaxis protein CheV 1982 46.06 0 2159327..2160544 - 405 15642009 - VC2007 - ROK family transcriptional regulator 1983 48.76 0 2160989..2162434 + 481 15642010 - VC2008 - pyruvate kinase II 1984 46.92 0 2162476..2163645 - 389 15642011 - VC2009 - hypothetical protein 1985 40.48 -1 2163652..2163777 - 41 15642012 - VC2010 - hypothetical protein 1986 45.18 0 2163877..2164467 + 196 15642013 - VC2011 - hypothetical protein 1987 45.83 0 2164851..2166434 + 527 15642014 - VC2012 - sodium-dependent transporter 1988 47.77 0 2166647..2168149 - 500 15642015 - VC2013 - glucose-specific PTS system IIBC components 1989 45.57 0 2168521..2169288 - 255 15642016 - VC2014 - hypothetical protein 1990 47.90 0 2169279..2170253 - 324 15642017 - VC2015 - DNA polymerase III subunit delta' 1991 48.36 0 2170246..2170884 - 212 15642018 tdk VC2016 - thymidylate kinase 1992 46.41 0 2170881..2171897 - 338 15642019 - VC2017 - hypothetical protein 1993 47.76 0 2171894..2172697 - 267 161581997 - VC2018 - 4-amino-4-deoxychorismate lyase 1994 50.12 0 2172775..2174019 - 414 15642021 - VC2019 - 3-oxoacyl-(acyl carrier protein) synthase II 1995 43.46 0 2174108..2174344 - 78 161581996 acpP VC2020 - acyl carrier protein 1996 50.47 0 2174580..2175326 - 248 15642023 fabG VC2021 - 3-ketoacyl-(acyl-carrier-protein) reductase 1997 48.99 0 2175342..2176280 - 312 15642024 - VC2022 - acyl carrier protein S-malonyltransferase 1998 49.53 0 2176335..2177285 - 316 15642025 - VC2023 - 3-oxoacyl-(acyl carrier protein) synthase III 1999 48.34 0 2177291..2178316 - 341 15642026 - VC2024 - putative glycerol-3-phosphate acyltransferase PlsX 2000 48.54 0 2178326..2178496 - 56 15642027 rpmF VC2025 - 50S ribosomal protein L32 2001 41.90 -1 2178531..2179055 - 174 15642028 - VC2026 - hypothetical protein 2002 45.02 0 2179203..2179784 + 193 15642029 maf VC2027 - Maf-like protein 2003 48.95 0 2179885..2180832 - 315 15642030 - VC2028 - ribosomal large subunit pseudouridine synthase C 2004 41.25 -1 2180746..2180985 + 79 15642031 - VC2029 - hypothetical protein 2005 50.21 0 2181444..2184602 + 1052 15642032 - VC2030 - ribonuclease E 2006 49.23 0 2184950..2186515 + 521 15642033 - VC2031 - sulfate permease family protein 2007 50.23 0 2186633..2187508 + 291 15642034 - VC2032 - hypothetical protein 2008 48.72 0 2187618..2190302 - 894 15642035 - VC2033 - bifunctional acetaldehyde-CoA/alcohol dehydrogenase 2009 25.93 -2 2190523..2190630 + 35 15642036 - VC2034 - hypothetical protein 2010 48.51 0 2190929..2191567 + 212 15642037 - VC2035 - hypothetical protein 2011 49.69 0 2191657..2192769 - 370 15642038 - VC2036 - aspartate-semialdehyde dehydrogenase 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0