IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1892	 46.79	0	2066452..2066763	-	103	15641919	-	VC1917	-	hypothetical protein
1893	 46.02	0	2066898..2068757	-	619	15641920	-	VC1918	-	peptidyl-prolyl cis-trans isomerse D
1894	 48.72	0	2068910..2069182	-	90	15641921	-	VC1919	-	DNA-binding protein HU-beta
1895	 48.92	0	2069366..2071726	-	786	15641922	-	VC1920	-	ATP-dependent protease LA
1896	 47.54	0	2071849..2073129	-	426	15641923	clpX	VC1921	-	ATP-dependent protease ATP-binding subunit
1897	 46.43	0	2073209..2073811	-	200	15641924	clpP	VC1922	-	ATP-dependent Clp protease proteolytic subunit
1898	 47.93	0	2073941..2075242	-	433	15641925	tig	VC1923	-	trigger factor
1899	 43.57	0	2075349..2075768	+	139	15641926	-	VC1924	-	hypothetical protein
1900	 49.44	0	2075741..2077534	+	597	15641927	-	VC1925	-	C4-dicarboxylate transport sensor protein
1901	 49.52	0	2077537..2078877	+	446	15641928	-	VC1926	-	C4-dicarboxylate transport transcriptional regulatory protein
1902	 50.59	0	2078993..2080354	-	453	15641929	-	VC1927	-	C4-dicarboxylate transport protein
1903	 46.64	0	2080358..2081056	-	232	15641930	-	VC1928	-	C4-dicarboxylate transport protein DctQ, putative
1904	 48.75	0	2081087..2082085	-	332	15641931	-	VC1929	-	C4-dicarboxylate-binding periplasmic protein
1905	 36.46	-2	2082173..2082268	-	31	15641932	-	VC1930	-	hypothetical protein
1906	 50.49	0	2082317..2083843	-	508	15641933	-	VC1931	-	hypothetical protein
1907	 41.52	-1	2084014..2084184	-	56	15641934	-	VC1932	-	hypothetical protein
1908	 43.31	0	2084346..2084816	+	156	15641935	-	VC1933	-	hypothetical protein
1909	 43.24	0	2084780..2086747	+	655	15641936	-	VC1934	-	GGDEF family protein
1910	 50.33	0	2086826..2087584	+	252	15641937	-	VC1935	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein
1911	 45.23	0	2087587..2088519	+	310	15641938	-	VC1936	-	phosphatidate cytidylyltransferase, putative
1912	 46.43	0	2088527..2089198	+	223	15641939	-	VC1937	-	hypothetical protein
1913	 46.00	0	2089288..2089737	+	149	15641940	-	VC1938	-	hypothetical protein
1914	 47.50	0	2090031..2090651	+	206	15641941	-	VC1939	-	hypothetical protein
1915	 47.96	0	2090698..2091360	-	220	15641942	-	VC1940	-	hypothetical protein
1916	 46.99	0	2091673..2092968	-	431	15641943	-	VC1941	-	hypothetical protein
1917	 49.79	0	2093523..2094458	+	311	15641944	-	VC1942	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
1918	 50.54	0	2094433..2094525	+	30	15641945	-	VC1943	-	hypothetical protein
1919	 48.03	0	2094741..2095604	+	287	15641946	-	VC1944	-	PvcB protein
1920	 48.29	0	2095589..2097052	+	487	15641947	-	VC1945	-	hypothetical protein
1921	 50.93	0	2097041..2097148	-	35	15641948	-	VC1946	-	hypothetical protein
1922	 42.90	-1	2097183..2098112	-	309	15641949	-	VC1947	-	LysR family transcriptional regulator
1923	 36.46	-2	2098271..2098462	+	63	15641950	-	VC1948	-	hypothetical protein
1924	 44.39	0	2098432..2100258	+	608	15641951	-	VC1949	-	pvcA protein
1925	 52.33	+1	2100348..2102795	-	815	15641952	-	VC1950	-	biotin sulfoxide reductase
1926	 49.86	0	2102818..2103924	-	368	15641953	-	VC1951	-	cytochrome c-type protein YecK
1927	 50.37	0	2104179..2106719	-	846	15641954	-	VC1952	-	chitinase
1928	 48.93	0	2106983..2108200	-	405	15641955	-	VC1953	-	NupC family protein
1929	 33.33	-2	2108248..2108349	+	33	15641956	-	VC1954	-	hypothetical protein
1930	 50.32	0	2108531..2109478	-	315	15641957	-	VC1955	-	LysR family transcriptional regulator
1931	 47.53	0	2109642..2110613	-	323	15641958	-	VC1956	-	lytic murein transglycosylase, putative
1932	 43.37	0	2110638..2110946	-	102	15641959	-	VC1957	-	hypothetical protein
1933	 42.06	-1	2110977..2111102	+	41	15641960	-	VC1958	-	hypothetical protein
1934	 48.57	0	2111116..2111778	+	220	15641961	minC	VC1959	-	septum formation inhibitor
1935	 48.98	0	2111781..2112611	+	276	15641962	-	VC1960	-	septum site-determining protein MinD
1936	 47.73	0	2112616..2112879	+	87	15641963	minE	VC1961	-	cell division topological specificity factor MinE
1937	 48.17	0	2113168..2113659	+	163	15641964	-	VC1962	-	lipoprotein
1938	 45.98	0	2113726..2114223	-	165	15641965	-	VC1963	-	hypothetical protein
1939	 48.86	0	2114204..2115079	-	291	15641966	-	VC1964	-	hypothetical protein
1940	 44.67	0	2115273..2115863	+	196	15641967	-	VC1965	-	hypothetical protein
1941	 49.60	0	2115867..2117747	+	626	15641968	-	VC1966	-	hypothetical protein
1942	 43.84	0	2117923..2119977	+	684	15641969	-	VC1967	-	methyl-accepting chemotaxis protein
1943	 43.41	0	2120030..2120575	-	181	15641970	-	VC1968	-	transcriptional regulator
1944	 41.67	-1	2120587..2120682	-	31	15641971	-	VC1969	-	hypothetical protein
1945	 51.80	+1	2120663..2121826	+	387	15641972	-	VC1970	-	benzoate transport protein
1946	 53.11	+1	2121855..2123285	-	476	15641973	-	VC1971	-	O-succinylbenzoic acid--CoA ligase
1947	 52.75	+1	2123261..2124259	-	332	15641974	-	VC1972	-	O-succinylbenzoate synthase
1948	 53.29	+1	2124347..2125213	-	288	161581999	-	VC1973	-	naphthoate synthase
1949	 50.76	0	2125238..2126029	-	263	15641976	-	VC1974	-	acyl-CoA thioester hydrolase YfbB
1950	 53.36	+1	2126019..2127731	-	570	15641977	-	VC1975	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1951	 52.75	+1	2127728..2129035	-	435	15641978	-	VC1976	-	menaquinone-specific isochorismate synthase
1952	 49.88	0	2129250..2130464	+	404	15641979	-	VC1977	-	aminotransferase AlaT
1953	 49.29	0	2130500..2131201	+	233	15641980	-	VC1978	-	hypothetical protein
1954	 52.41	+1	2131258..2132583	+	441	15641981	-	VC1979	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1955	 51.24	0	2132577..2133179	-	200	15641982	-	VC1980	-	hypothetical protein
1956	 52.47	+1	2133066..2133734	+	222	15641983	-	VC1981	-	hypothetical protein
1957	 40.54	-1	2133691..2133801	+	36	15641984	-	VC1982	-	hypothetical protein
1958	 48.59	0	2133810..2135657	-	615	15641985	-	VC1983	-	peptidase, putative
1959	 50.09	0	2135870..2137015	-	381	15641986	-	VC1984	-	ribonuclease D
1960	 50.62	0	2137101..2138801	-	566	15641987	-	VC1985	-	long-chain-fatty-acid--CoA ligase
1961	 51.46	0	2138926..2139780	-	284	15641988	-	VC1986	-	hypothetical protein
1962	 50.41	0	2139777..2140385	-	202	15641989	-	VC1987	-	outer membrane lipoprotein Slp, putative
1963	 51.96	+1	2140351..2140656	-	101	15641990	-	VC1988	-	hypothetical protein
1964	 52.66	+1	2140716..2141429	-	237	15641991	-	VC1989	-	hypothetical protein
1965	 51.52	0	2141426..2143366	-	646	15641992	-	VC1990	-	ATP-dependent helicase DinG
1966	 47.03	0	2143320..2143757	+	145	15641993	-	VC1991	-	hypothetical protein
1967	 46.28	0	2143931..2144764	+	277	15641994	purU	VC1992	-	formyltetrahydrofolate deformylase
1968	 51.77	+1	2144838..2146838	-	666	15641995	-	VC1993	-	2,4-dienoyl-CoA reductase
1969	 48.89	0	2147068..2148918	+	616	15641996	-	VC1994	-	protease IV
1970	 49.51	0	2149035..2150048	+	337	15641997	ansA	VC1995	-	cytoplasmic asparaginase I
1971	 48.26	0	2150146..2150433	-	95	15641998	-	VC1996	-	hypothetical protein
1972	 45.58	0	2150537..2151361	+	274	15641999	-	VC1997	-	hypothetical protein
1973	 44.37	0	2151522..2151965	-	147	15642000	-	VC1998	-	methionine sulfoxide reductase B
1974	 36.05	-2	2151971..2152117	+	48	15642001	-	VC1999	-	hypothetical protein
1975	 46.89	0	2152265..2153260	+	331	15642002	-	VC2000	-	glyceraldehyde-3-phosphate dehydrogenase
1976	 49.16	0	2153408..2154298	+	296	15642003	-	VC2001	-	hypothetical protein
1977	 48.76	0	2154733..2155737	+	334	15642004	-	VC2002	-	hypothetical protein
1978	 48.11	0	2155892..2156710	+	272	161581998	rrmA	VC2003	-	23S rRNA methyltransferase A
1979	 48.36	0	2156731..2157708	+	325	15642006	-	VC2004	-	hypothetical protein
1980	 47.90	0	2157848..2158204	+	118	15642007	-	VC2005	-	hypothetical protein
1981	 43.17	0	2158278..2159222	-	314	15642008	-	VC2006	-	chemotaxis protein CheV
1982	 46.06	0	2159327..2160544	-	405	15642009	-	VC2007	-	ROK family transcriptional regulator
1983	 48.76	0	2160989..2162434	+	481	15642010	-	VC2008	-	pyruvate kinase II
1984	 46.92	0	2162476..2163645	-	389	15642011	-	VC2009	-	hypothetical protein
1985	 40.48	-1	2163652..2163777	-	41	15642012	-	VC2010	-	hypothetical protein
1986	 45.18	0	2163877..2164467	+	196	15642013	-	VC2011	-	hypothetical protein
1987	 45.83	0	2164851..2166434	+	527	15642014	-	VC2012	-	sodium-dependent transporter
1988	 47.77	0	2166647..2168149	-	500	15642015	-	VC2013	-	glucose-specific PTS system IIBC components
1989	 45.57	0	2168521..2169288	-	255	15642016	-	VC2014	-	hypothetical protein
1990	 47.90	0	2169279..2170253	-	324	15642017	-	VC2015	-	DNA polymerase III subunit delta'
1991	 48.36	0	2170246..2170884	-	212	15642018	tdk	VC2016	-	thymidylate kinase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.