version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1876 46.96 0 2049552..2051144 + 530 15641903 nhaB VC1901 - sodium/proton antiporter 1877 48.85 0 2051224..2051745 + 173 15641904 - VC1902 - disulfide bond formation protein B 1878 49.15 0 2051820..2054702 - 960 15641905 - VC1903 - cell division protein FtsK, putative 1879 42.83 -1 2054880..2055374 - 164 15641906 - VC1904 - leucine-responsive transcriptional regulator 1880 48.27 0 2055531..2056655 + 374 15641907 - VC1905 - alanine dehydrogenase 1881 48.04 0 2056697..2057893 - 398 15641908 - VC1906 - hypothetical protein 1882 46.26 0 2057955..2058929 - 324 15641909 cysB VC1907 - transcriptional regulator CysB 1883 42.67 -1 2059015..2059164 - 49 15641910 - VC1908 - hypothetical protein 1884 41.70 -1 2059194..2059982 + 262 15641911 - VC1909 - hypothetical protein 1885 43.11 -1 2060044..2060820 + 258 15641912 - VC1910 - tRNA-(MS[2]IO[6]A)-hydroxylase 1886 48.42 0 2060878..2061573 - 231 15641913 - VC1911 - orotidine 5'-phosphate decarboxylase 1887 45.47 0 2061646..2062815 - 389 15641914 - VC1912 - hypothetical protein 1888 41.49 -1 2062827..2063108 - 93 15641915 - VC1913 - hypothetical protein 1889 47.67 0 2063247..2063525 - 92 15641916 ihfB VC1914 - integration host factor subunit beta 1890 46.44 0 2063813..2065483 - 556 15641917 rpsA VC1915 - 30S ribosomal protein S1 1891 49.13 0 2065592..2066281 - 229 15641918 cmk VC1916 - cytidylate kinase 1892 46.79 0 2066452..2066763 - 103 15641919 - VC1917 - hypothetical protein 1893 46.02 0 2066898..2068757 - 619 15641920 - VC1918 - peptidyl-prolyl cis-trans isomerse D 1894 48.72 0 2068910..2069182 - 90 15641921 - VC1919 - DNA-binding protein HU-beta 1895 48.92 0 2069366..2071726 - 786 15641922 - VC1920 - ATP-dependent protease LA 1896 47.54 0 2071849..2073129 - 426 15641923 clpX VC1921 - ATP-dependent protease ATP-binding subunit 1897 46.43 0 2073209..2073811 - 200 15641924 clpP VC1922 - ATP-dependent Clp protease proteolytic subunit 1898 47.93 0 2073941..2075242 - 433 15641925 tig VC1923 - trigger factor 1899 43.57 0 2075349..2075768 + 139 15641926 - VC1924 - hypothetical protein 1900 49.44 0 2075741..2077534 + 597 15641927 - VC1925 - C4-dicarboxylate transport sensor protein 1901 49.52 0 2077537..2078877 + 446 15641928 - VC1926 - C4-dicarboxylate transport transcriptional regulatory protein 1902 50.59 0 2078993..2080354 - 453 15641929 - VC1927 - C4-dicarboxylate transport protein 1903 46.64 0 2080358..2081056 - 232 15641930 - VC1928 - C4-dicarboxylate transport protein DctQ, putative 1904 48.75 0 2081087..2082085 - 332 15641931 - VC1929 - C4-dicarboxylate-binding periplasmic protein 1905 36.46 -2 2082173..2082268 - 31 15641932 - VC1930 - hypothetical protein 1906 50.49 0 2082317..2083843 - 508 15641933 - VC1931 - hypothetical protein 1907 41.52 -1 2084014..2084184 - 56 15641934 - VC1932 - hypothetical protein 1908 43.31 0 2084346..2084816 + 156 15641935 - VC1933 - hypothetical protein 1909 43.24 0 2084780..2086747 + 655 15641936 - VC1934 - GGDEF family protein 1910 50.33 0 2086826..2087584 + 252 15641937 - VC1935 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein 1911 45.23 0 2087587..2088519 + 310 15641938 - VC1936 - phosphatidate cytidylyltransferase, putative 1912 46.43 0 2088527..2089198 + 223 15641939 - VC1937 - hypothetical protein 1913 46.00 0 2089288..2089737 + 149 15641940 - VC1938 - hypothetical protein 1914 47.50 0 2090031..2090651 + 206 15641941 - VC1939 - hypothetical protein 1915 47.96 0 2090698..2091360 - 220 15641942 - VC1940 - hypothetical protein 1916 46.99 0 2091673..2092968 - 431 15641943 - VC1941 - hypothetical protein 1917 49.79 0 2093523..2094458 + 311 15641944 - VC1942 - methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase 1918 50.54 0 2094433..2094525 + 30 15641945 - VC1943 - hypothetical protein 1919 48.03 0 2094741..2095604 + 287 15641946 - VC1944 - PvcB protein 1920 48.29 0 2095589..2097052 + 487 15641947 - VC1945 - hypothetical protein 1921 50.93 0 2097041..2097148 - 35 15641948 - VC1946 - hypothetical protein 1922 42.90 -1 2097183..2098112 - 309 15641949 - VC1947 - LysR family transcriptional regulator 1923 36.46 -2 2098271..2098462 + 63 15641950 - VC1948 - hypothetical protein 1924 44.39 0 2098432..2100258 + 608 15641951 - VC1949 - pvcA protein 1925 52.33 +1 2100348..2102795 - 815 15641952 - VC1950 - biotin sulfoxide reductase 1926 49.86 0 2102818..2103924 - 368 15641953 - VC1951 - cytochrome c-type protein YecK 1927 50.37 0 2104179..2106719 - 846 15641954 - VC1952 - chitinase 1928 48.93 0 2106983..2108200 - 405 15641955 - VC1953 - NupC family protein 1929 33.33 -2 2108248..2108349 + 33 15641956 - VC1954 - hypothetical protein 1930 50.32 0 2108531..2109478 - 315 15641957 - VC1955 - LysR family transcriptional regulator 1931 47.53 0 2109642..2110613 - 323 15641958 - VC1956 - lytic murein transglycosylase, putative 1932 43.37 0 2110638..2110946 - 102 15641959 - VC1957 - hypothetical protein 1933 42.06 -1 2110977..2111102 + 41 15641960 - VC1958 - hypothetical protein 1934 48.57 0 2111116..2111778 + 220 15641961 minC VC1959 - septum formation inhibitor 1935 48.98 0 2111781..2112611 + 276 15641962 - VC1960 - septum site-determining protein MinD 1936 47.73 0 2112616..2112879 + 87 15641963 minE VC1961 - cell division topological specificity factor MinE 1937 48.17 0 2113168..2113659 + 163 15641964 - VC1962 - lipoprotein 1938 45.98 0 2113726..2114223 - 165 15641965 - VC1963 - hypothetical protein 1939 48.86 0 2114204..2115079 - 291 15641966 - VC1964 - hypothetical protein 1940 44.67 0 2115273..2115863 + 196 15641967 - VC1965 - hypothetical protein 1941 49.60 0 2115867..2117747 + 626 15641968 - VC1966 - hypothetical protein 1942 43.84 0 2117923..2119977 + 684 15641969 - VC1967 - methyl-accepting chemotaxis protein 1943 43.41 0 2120030..2120575 - 181 15641970 - VC1968 - transcriptional regulator 1944 41.67 -1 2120587..2120682 - 31 15641971 - VC1969 - hypothetical protein 1945 51.80 +1 2120663..2121826 + 387 15641972 - VC1970 - benzoate transport protein 1946 53.11 +1 2121855..2123285 - 476 15641973 - VC1971 - O-succinylbenzoic acid--CoA ligase 1947 52.75 +1 2123261..2124259 - 332 15641974 - VC1972 - O-succinylbenzoate synthase 1948 53.29 +1 2124347..2125213 - 288 161581999 - VC1973 - naphthoate synthase 1949 50.76 0 2125238..2126029 - 263 15641976 - VC1974 - acyl-CoA thioester hydrolase YfbB 1950 53.36 +1 2126019..2127731 - 570 15641977 - VC1975 - 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase 1951 52.75 +1 2127728..2129035 - 435 15641978 - VC1976 - menaquinone-specific isochorismate synthase 1952 49.88 0 2129250..2130464 + 404 15641979 - VC1977 - aminotransferase AlaT 1953 49.29 0 2130500..2131201 + 233 15641980 - VC1978 - hypothetical protein 1954 52.41 +1 2131258..2132583 + 441 15641981 - VC1979 - deoxyguanosinetriphosphate triphosphohydrolase-like protein 1955 51.24 0 2132577..2133179 - 200 15641982 - VC1980 - hypothetical protein 1956 52.47 +1 2133066..2133734 + 222 15641983 - VC1981 - hypothetical protein 1957 40.54 -1 2133691..2133801 + 36 15641984 - VC1982 - hypothetical protein 1958 48.59 0 2133810..2135657 - 615 15641985 - VC1983 - peptidase, putative 1959 50.09 0 2135870..2137015 - 381 15641986 - VC1984 - ribonuclease D 1960 50.62 0 2137101..2138801 - 566 15641987 - VC1985 - long-chain-fatty-acid--CoA ligase 1961 51.46 0 2138926..2139780 - 284 15641988 - VC1986 - hypothetical protein 1962 50.41 0 2139777..2140385 - 202 15641989 - VC1987 - outer membrane lipoprotein Slp, putative 1963 51.96 +1 2140351..2140656 - 101 15641990 - VC1988 - hypothetical protein 1964 52.66 +1 2140716..2141429 - 237 15641991 - VC1989 - hypothetical protein 1965 51.52 0 2141426..2143366 - 646 15641992 - VC1990 - ATP-dependent helicase DinG 1966 47.03 0 2143320..2143757 + 145 15641993 - VC1991 - hypothetical protein 1967 46.28 0 2143931..2144764 + 277 15641994 purU VC1992 - formyltetrahydrofolate deformylase 1968 51.77 +1 2144838..2146838 - 666 15641995 - VC1993 - 2,4-dienoyl-CoA reductase 1969 48.89 0 2147068..2148918 + 616 15641996 - VC1994 - protease IV 1970 49.51 0 2149035..2150048 + 337 15641997 ansA VC1995 - cytoplasmic asparaginase I 1971 48.26 0 2150146..2150433 - 95 15641998 - VC1996 - hypothetical protein 1972 45.58 0 2150537..2151361 + 274 15641999 - VC1997 - hypothetical protein 1973 44.37 0 2151522..2151965 - 147 15642000 - VC1998 - methionine sulfoxide reductase B 1974 36.05 -2 2151971..2152117 + 48 15642001 - VC1999 - hypothetical protein 1975 46.89 0 2152265..2153260 + 331 15642002 - VC2000 - glyceraldehyde-3-phosphate dehydrogenase 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
version
1.0