IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1867	 43.52	0	2039841..2040380	-	179	15641894	-	VC1892	-	hypothetical protein
1868	 49.25	0	2040560..2041420	-	286	15641895	-	VC1893	-	hypothetical protein
1869	 45.35	0	2041448..2042038	-	196	15641896	-	VC1894	-	hypothetical protein
1870	 46.15	0	2042091..2042480	-	129	15641897	-	VC1895	-	hypothetical protein
1871	 48.13	0	2042480..2043898	-	472	15641898	-	VC1896	-	hypothetical protein
1872	 47.86	0	2043911..2044261	-	116	15641899	-	VC1897	-	Hit family protein
1873	 48.54	0	2044494..2046512	+	672	15641900	-	VC1898	-	methyl-accepting chemotaxis protein
1874	 48.26	0	2046682..2047833	+	383	15641901	-	VC1899	-	hypothetical protein
1875	 44.88	0	2048068..2048907	-	279	15641902	-	VC1900	-	fatty acid metabolism regulator
1876	 46.96	0	2049552..2051144	+	530	15641903	nhaB	VC1901	-	sodium/proton antiporter
1877	 48.85	0	2051224..2051745	+	173	15641904	-	VC1902	-	disulfide bond formation protein B
1878	 49.15	0	2051820..2054702	-	960	15641905	-	VC1903	-	cell division protein FtsK, putative
1879	 42.83	-1	2054880..2055374	-	164	15641906	-	VC1904	-	leucine-responsive transcriptional regulator
1880	 48.27	0	2055531..2056655	+	374	15641907	-	VC1905	-	alanine dehydrogenase
1881	 48.04	0	2056697..2057893	-	398	15641908	-	VC1906	-	hypothetical protein
1882	 46.26	0	2057955..2058929	-	324	15641909	cysB	VC1907	-	transcriptional regulator CysB
1883	 42.67	-1	2059015..2059164	-	49	15641910	-	VC1908	-	hypothetical protein
1884	 41.70	-1	2059194..2059982	+	262	15641911	-	VC1909	-	hypothetical protein
1885	 43.11	-1	2060044..2060820	+	258	15641912	-	VC1910	-	tRNA-(MS[2]IO[6]A)-hydroxylase
1886	 48.42	0	2060878..2061573	-	231	15641913	-	VC1911	-	orotidine 5'-phosphate decarboxylase
1887	 45.47	0	2061646..2062815	-	389	15641914	-	VC1912	-	hypothetical protein
1888	 41.49	-1	2062827..2063108	-	93	15641915	-	VC1913	-	hypothetical protein
1889	 47.67	0	2063247..2063525	-	92	15641916	ihfB	VC1914	-	integration host factor subunit beta
1890	 46.44	0	2063813..2065483	-	556	15641917	rpsA	VC1915	-	30S ribosomal protein S1
1891	 49.13	0	2065592..2066281	-	229	15641918	cmk	VC1916	-	cytidylate kinase
1892	 46.79	0	2066452..2066763	-	103	15641919	-	VC1917	-	hypothetical protein
1893	 46.02	0	2066898..2068757	-	619	15641920	-	VC1918	-	peptidyl-prolyl cis-trans isomerse D
1894	 48.72	0	2068910..2069182	-	90	15641921	-	VC1919	-	DNA-binding protein HU-beta
1895	 48.92	0	2069366..2071726	-	786	15641922	-	VC1920	-	ATP-dependent protease LA
1896	 47.54	0	2071849..2073129	-	426	15641923	clpX	VC1921	-	ATP-dependent protease ATP-binding subunit
1897	 46.43	0	2073209..2073811	-	200	15641924	clpP	VC1922	-	ATP-dependent Clp protease proteolytic subunit
1898	 47.93	0	2073941..2075242	-	433	15641925	tig	VC1923	-	trigger factor
1899	 43.57	0	2075349..2075768	+	139	15641926	-	VC1924	-	hypothetical protein
1900	 49.44	0	2075741..2077534	+	597	15641927	-	VC1925	-	C4-dicarboxylate transport sensor protein
1901	 49.52	0	2077537..2078877	+	446	15641928	-	VC1926	-	C4-dicarboxylate transport transcriptional regulatory protein
1902	 50.59	0	2078993..2080354	-	453	15641929	-	VC1927	-	C4-dicarboxylate transport protein
1903	 46.64	0	2080358..2081056	-	232	15641930	-	VC1928	-	C4-dicarboxylate transport protein DctQ, putative
1904	 48.75	0	2081087..2082085	-	332	15641931	-	VC1929	-	C4-dicarboxylate-binding periplasmic protein
1905	 36.46	-2	2082173..2082268	-	31	15641932	-	VC1930	-	hypothetical protein
1906	 50.49	0	2082317..2083843	-	508	15641933	-	VC1931	-	hypothetical protein
1907	 41.52	-1	2084014..2084184	-	56	15641934	-	VC1932	-	hypothetical protein
1908	 43.31	0	2084346..2084816	+	156	15641935	-	VC1933	-	hypothetical protein
1909	 43.24	0	2084780..2086747	+	655	15641936	-	VC1934	-	GGDEF family protein
1910	 50.33	0	2086826..2087584	+	252	15641937	-	VC1935	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase-related protein
1911	 45.23	0	2087587..2088519	+	310	15641938	-	VC1936	-	phosphatidate cytidylyltransferase, putative
1912	 46.43	0	2088527..2089198	+	223	15641939	-	VC1937	-	hypothetical protein
1913	 46.00	0	2089288..2089737	+	149	15641940	-	VC1938	-	hypothetical protein
1914	 47.50	0	2090031..2090651	+	206	15641941	-	VC1939	-	hypothetical protein
1915	 47.96	0	2090698..2091360	-	220	15641942	-	VC1940	-	hypothetical protein
1916	 46.99	0	2091673..2092968	-	431	15641943	-	VC1941	-	hypothetical protein
1917	 49.79	0	2093523..2094458	+	311	15641944	-	VC1942	-	methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
1918	 50.54	0	2094433..2094525	+	30	15641945	-	VC1943	-	hypothetical protein
1919	 48.03	0	2094741..2095604	+	287	15641946	-	VC1944	-	PvcB protein
1920	 48.29	0	2095589..2097052	+	487	15641947	-	VC1945	-	hypothetical protein
1921	 50.93	0	2097041..2097148	-	35	15641948	-	VC1946	-	hypothetical protein
1922	 42.90	-1	2097183..2098112	-	309	15641949	-	VC1947	-	LysR family transcriptional regulator
1923	 36.46	-2	2098271..2098462	+	63	15641950	-	VC1948	-	hypothetical protein
1924	 44.39	0	2098432..2100258	+	608	15641951	-	VC1949	-	pvcA protein
1925	 52.33	+1	2100348..2102795	-	815	15641952	-	VC1950	-	biotin sulfoxide reductase
1926	 49.86	0	2102818..2103924	-	368	15641953	-	VC1951	-	cytochrome c-type protein YecK
1927	 50.37	0	2104179..2106719	-	846	15641954	-	VC1952	-	chitinase
1928	 48.93	0	2106983..2108200	-	405	15641955	-	VC1953	-	NupC family protein
1929	 33.33	-2	2108248..2108349	+	33	15641956	-	VC1954	-	hypothetical protein
1930	 50.32	0	2108531..2109478	-	315	15641957	-	VC1955	-	LysR family transcriptional regulator
1931	 47.53	0	2109642..2110613	-	323	15641958	-	VC1956	-	lytic murein transglycosylase, putative
1932	 43.37	0	2110638..2110946	-	102	15641959	-	VC1957	-	hypothetical protein
1933	 42.06	-1	2110977..2111102	+	41	15641960	-	VC1958	-	hypothetical protein
1934	 48.57	0	2111116..2111778	+	220	15641961	minC	VC1959	-	septum formation inhibitor
1935	 48.98	0	2111781..2112611	+	276	15641962	-	VC1960	-	septum site-determining protein MinD
1936	 47.73	0	2112616..2112879	+	87	15641963	minE	VC1961	-	cell division topological specificity factor MinE
1937	 48.17	0	2113168..2113659	+	163	15641964	-	VC1962	-	lipoprotein
1938	 45.98	0	2113726..2114223	-	165	15641965	-	VC1963	-	hypothetical protein
1939	 48.86	0	2114204..2115079	-	291	15641966	-	VC1964	-	hypothetical protein
1940	 44.67	0	2115273..2115863	+	196	15641967	-	VC1965	-	hypothetical protein
1941	 49.60	0	2115867..2117747	+	626	15641968	-	VC1966	-	hypothetical protein
1942	 43.84	0	2117923..2119977	+	684	15641969	-	VC1967	-	methyl-accepting chemotaxis protein
1943	 43.41	0	2120030..2120575	-	181	15641970	-	VC1968	-	transcriptional regulator
1944	 41.67	-1	2120587..2120682	-	31	15641971	-	VC1969	-	hypothetical protein
1945	 51.80	+1	2120663..2121826	+	387	15641972	-	VC1970	-	benzoate transport protein
1946	 53.11	+1	2121855..2123285	-	476	15641973	-	VC1971	-	O-succinylbenzoic acid--CoA ligase
1947	 52.75	+1	2123261..2124259	-	332	15641974	-	VC1972	-	O-succinylbenzoate synthase
1948	 53.29	+1	2124347..2125213	-	288	161581999	-	VC1973	-	naphthoate synthase
1949	 50.76	0	2125238..2126029	-	263	15641976	-	VC1974	-	acyl-CoA thioester hydrolase YfbB
1950	 53.36	+1	2126019..2127731	-	570	15641977	-	VC1975	-	2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylic acid synthase/2-oxoglutarate decarboxylase
1951	 52.75	+1	2127728..2129035	-	435	15641978	-	VC1976	-	menaquinone-specific isochorismate synthase
1952	 49.88	0	2129250..2130464	+	404	15641979	-	VC1977	-	aminotransferase AlaT
1953	 49.29	0	2130500..2131201	+	233	15641980	-	VC1978	-	hypothetical protein
1954	 52.41	+1	2131258..2132583	+	441	15641981	-	VC1979	-	deoxyguanosinetriphosphate triphosphohydrolase-like protein
1955	 51.24	0	2132577..2133179	-	200	15641982	-	VC1980	-	hypothetical protein
1956	 52.47	+1	2133066..2133734	+	222	15641983	-	VC1981	-	hypothetical protein
1957	 40.54	-1	2133691..2133801	+	36	15641984	-	VC1982	-	hypothetical protein
1958	 48.59	0	2133810..2135657	-	615	15641985	-	VC1983	-	peptidase, putative
1959	 50.09	0	2135870..2137015	-	381	15641986	-	VC1984	-	ribonuclease D
1960	 50.62	0	2137101..2138801	-	566	15641987	-	VC1985	-	long-chain-fatty-acid--CoA ligase
1961	 51.46	0	2138926..2139780	-	284	15641988	-	VC1986	-	hypothetical protein
1962	 50.41	0	2139777..2140385	-	202	15641989	-	VC1987	-	outer membrane lipoprotein Slp, putative
1963	 51.96	+1	2140351..2140656	-	101	15641990	-	VC1988	-	hypothetical protein
1964	 52.66	+1	2140716..2141429	-	237	15641991	-	VC1989	-	hypothetical protein
1965	 51.52	0	2141426..2143366	-	646	15641992	-	VC1990	-	ATP-dependent helicase DinG
1966	 47.03	0	2143320..2143757	+	145	15641993	-	VC1991	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.