IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1750	 41.65	-1	1923895..1925049	-	384	15641777	-	VC1774	-	hypothetical protein
1751	 43.61	0	1925231..1926067	-	278	15641778	-	VC1775	-	hypothetical protein
1752	 43.14	-1	1926196..1927092	-	298	15641779	-	VC1776	-	N-acetylneuraminate lyase, putative
1753	 45.33	0	1927130..1928413	-	427	15641780	-	VC1777	-	hypothetical protein
1754	 41.19	-1	1928421..1928942	-	173	15641781	-	VC1778	-	hypothetical protein
1755	 44.62	0	1928993..1929958	-	321	15641782	-	VC1779	-	C4-dicarboxylate-binding periplasmic protein
1756	 34.01	-2	1929989..1930282	+	97	15641783	-	VC1780	-	hypothetical protein
1757	 47.16	0	1930173..1930895	+	240	15641784	-	VC1781	-	N-acetylmannosamine-6-phosphate 2-epimerase
1758	 45.02	0	1930883..1931746	+	287	15641785	-	VC1782	-	N-acetylmannosamine kinase
1759	 44.94	0	1931750..1932886	+	378	15641786	-	VC1783	-	N-acetylglucosamine-6-phosphate deacetylase
1760	 45.17	0	1933231..1935654	+	807	15641787	-	VC1784	-	neuraminidase
1761	 44.44	0	1935801..1936007	-	68	15641788	-	VC1785	-	transcriptional regulator
1762	 48.85	0	1936121..1936597	+	158	15641789	-	VC1786	-	DNA repair protein RadC, putative
1763	 45.65	0	1936594..1936731	+	45	15641790	-	VC1787	-	hypothetical protein
1764	 43.10	-1	1936827..1937522	-	231	15641791	-	VC1788	-	hypothetical protein
1765	 44.44	0	1937519..1938391	-	290	15641792	-	VC1789	-	transposase OrfAB, subunit B
1766	 43.19	0	1938388..1938732	-	114	15641793	-	VC1790	-	transposase OrfAB, subunit A
1767	 44.00	0	1938739..1939779	-	346	15641794	-	VC1791	-	hypothetical protein
1768	 42.78	-1	1939914..1940273	-	119	15641795	-	VC1792	-	hypothetical protein
1769	 39.15	-1	1940322..1940699	-	125	15641796	-	VC1793	-	hypothetical protein
1770	 37.82	-2	1940754..1941332	-	192	15641797	-	VC1794	-	hypothetical protein
1771	 38.94	-1	1941351..1941671	-	106	15641798	-	VC1795	-	transcriptional regulator, putative
1772	 39.73	-1	1941658..1942032	-	124	15641799	-	VC1796	-	middle operon regulator-related protein
1773	 40.04	-1	1942842..1943303	-	153	15641800	-	VC1797	-	hypothetical protein
1774	 44.53	0	1943306..1944457	-	383	15641801	-	VC1798	-	eha protein
1775	 47.72	0	1944387..1946144	-	585	15641802	-	VC1799	-	hypothetical protein
1776	 44.24	0	1946151..1947122	-	323	15641803	-	VC1800	-	hypothetical protein
1777	 34.71	-2	1947461..1947823	-	120	15641804	-	VC1801	-	hypothetical protein
1778	 38.82	-2	1947786..1948022	-	78	15641805	-	VC1802	-	hypothetical protein
1779	 40.48	-1	1948112..1948573	+	153	15641806	-	VC1803	-	hypothetical protein
1780	 48.25	0	1948800..1949114	+	104	15641807	-	VC1804	-	hypothetical protein
1781	 45.41	0	1949165..1949611	+	148	15641808	-	VC1805	-	hypothetical protein
1782	 43.36	0	1949718..1950704	+	328	15641809	-	VC1806	-	hypothetical protein
1783	 29.20	-2	1951671..1952516	+	281	15641810	-	VC1808	-	hypothetical protein
1784	 47.19	0	1952631..1952861	-	76	15641811	-	VC1809	-	transcriptional regulator, putative
1785	 43.63	0	1953461..1953664	+	67	15641812	-	VC1810	-	hypothetical protein
1786	 47.05	0	1953656..1954129	-	157	15641813	-	VC1811	-	hypothetical protein
1787	 45.95	0	1954253..1954672	-	139	15641814	-	VC1812	-	hypothetical protein
1788	 41.94	-1	1954641..1954733	-	30	15641815	-	VC1813	-	hypothetical protein
1789	 50.58	0	1954789..1956174	+	461	15641816	-	VC1814	-	deoxyribodipyrimidine photolyase
1790	 52.82	+1	1956171..1956878	+	235	15641817	-	VC1815	-	C factor cell-cell signaling protein
1791	 45.37	0	1956889..1957104	-	71	15641818	-	VC1816	-	hypothetical protein
1792	 50.40	0	1957201..1958964	-	587	15641819	-	VC1817	-	sigma-54 dependent transcriptional regulator
1793	 45.10	0	1959132..1959233	-	33	15641820	-	VC1818	-	hypothetical protein
1794	 49.57	0	1959245..1960765	+	506	15641821	-	VC1819	-	aldehyde dehydrogenase
1795	 37.41	-2	1961098..1961538	+	146	15641822	-	VC1820	-	PTS system, fructose-specific IIA component
1796	 49.79	0	1961550..1962953	+	467	15641823	-	VC1821	-	PTS system, fructose-specific IIBC component
1797	 49.52	0	1963028..1964893	-	621	15641824	-	VC1822	-	PTS system, fructose-specific IIABC component
1798	 49.33	0	1965110..1965409	+	99	15641825	-	VC1823	-	PTS system, fructose-specific IIB component
1799	 47.69	0	1965418..1966197	+	259	15641826	-	VC1824	-	PTS system, nitrogen regulatory IIA component, putative
1800	 42.74	-1	1966189..1967028	-	279	15641827	-	VC1825	-	transcriptional regulator
1801	 50.37	0	1967400..1969301	+	633	15641828	-	VC1826	-	PTS system, fructose-specific IIABC component
1802	 46.10	0	1969417..1970583	+	388	15641829	-	VC1827	-	mannose-6-phosphate isomerase
1803	 46.58	0	1970703..1971155	-	150	15641830	-	VC1828	-	hypothetical protein
1804	 42.59	-1	1971344..1971451	-	35	15641831	-	VC1829	-	hypothetical protein
1805	 44.79	0	1971429..1971524	+	31	15641832	-	VC1830	-	hypothetical protein
1806	 45.05	0	1971491..1973701	-	736	15641833	-	VC1831	-	sensor histidine kinase
1807	 45.03	0	1973909..1974481	+	190	15641834	-	VC1832	-	hypothetical protein
1808	 46.70	0	1974555..1975616	-	353	15641835	-	VC1833	-	quinolinate synthetase
1809	 46.80	0	1975790..1976554	-	254	15641836	-	VC1834	-	hypothetical protein
1810	 47.40	0	1976570..1977088	-	172	15641837	-	VC1835	-	peptidoglycan-associated lipoprotein
1811	 45.38	0	1977120..1978472	-	450	15641838	tolB	VC1836	-	translocation protein TolB
1812	 47.15	0	1978487..1979557	-	356	15641839	-	VC1837	-	tolA protein
1813	 43.08	-1	1979575..1980015	-	146	15641840	-	VC1838	-	tolR membrane protein
1814	 46.20	0	1980018..1980701	-	227	15641841	-	VC1839	-	tolQ protein
1815	 43.38	0	1980691..1981158	-	155	15641842	-	VC1840	-	hypothetical protein
1816	 47.80	0	1981267..1981584	-	105	15641843	-	VC1841	-	hypothetical protein
1817	 44.44	0	1981577..1981684	-	35	15641844	-	VC1842	-	hypothetical protein
1818	 47.05	0	1981697..1982833	-	378	15641845	-	VC1843	-	cytochrome d ubiquinol oxidase, subunit II
1819	 47.05	0	1982851..1984476	-	541	15641846	-	VC1844	-	cytochrome d ubiquinol oxidase, subunit I
1820	 47.16	0	1984896..1985900	-	334	15641847	ruvB	VC1845	-	Holliday junction DNA helicase B
1821	 48.29	0	1985956..1986570	-	204	15641848	ruvA	VC1846	-	Holliday junction DNA helicase motor protein
1822	 49.62	0	1986667..1987188	-	173	15641849	ruvC	VC1847	-	Holliday junction resolvase
1823	 46.59	0	1987276..1988655	-	459	15641850	cysS	VC1848	-	cysteinyl-tRNA synthetase
1824	 46.06	0	1988801..1989295	+	164	15641851	-	VC1849	-	peptidyl-prolyl cis-trans isomerase B
1825	 43.76	0	1989336..1990064	+	242	15641852	-	VC1850	-	UDP-2,3-diacylglucosamine hydrolase
1826	 43.62	0	1990171..1991385	+	404	15641853	-	VC1851	-	hypothetical protein
1827	 43.42	0	1991447..1991902	+	151	15641854	-	VC1852	-	hypothetical protein
1828	 37.04	-2	1991934..1992608	-	224	15641855	-	VC1853	-	hypothetical protein
1829	 41.92	-1	1992727..1993833	-	368	15641856	-	VC1854	-	porin, putative
1830	 46.48	0	1994271..1996346	+	691	161582001	dinG	VC1855	-	ATP-dependent DNA helicase DinG
1831	 50.00	0	1996384..1997163	+	259	15641858	-	VC1856	-	hypothetical protein
1832	 46.63	0	1997148..1997711	+	187	15641859	-	VC1857	-	primosomal replication protein N``
1833	 47.89	0	1997712..1997924	+	70	15641860	-	VC1858	-	hypothetical protein
1834	 47.71	0	1997948..2000068	-	706	15641861	-	VC1859	-	methyl-accepting chemotaxis protein
1835	 46.10	0	2000266..2001072	+	268	15641862	-	VC1860	-	exonuclease III
1836	 46.61	0	2001131..2001808	-	225	15641863	-	VC1861	-	amino acid ABC transporter, permease protein
1837	 48.53	0	2001811..2002593	-	260	15641864	-	VC1862	-	amino acid ABC transporter, permease protein
1838	 46.62	0	2002699..2003481	-	260	15641865	-	VC1863	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1839	 47.08	0	2003660..2004430	-	256	15641866	-	VC1864	-	amino acid ABC transporter, ATP-binding protein
1840	 49.94	0	2005135..2006688	+	517	15641867	-	VC1865	-	hypothetical protein
1841	 47.93	0	2006867..2009230	+	787	15641868	-	VC1866	-	formate acetyltransferase
1842	 48.01	0	2009366..2010394	+	342	15641869	-	VC1867	-	hypothetical protein
1843	 47.26	0	2010412..2012292	-	626	15641870	-	VC1868	-	methyl-accepting chemotaxis protein
1844	 46.15	0	2012625..2013365	+	246	15641871	pflA	VC1869	-	pyruvate formate lyase-activating enzyme 1
1845	 46.91	0	2013431..2014093	+	220	15641872	-	VC1870	-	hypothetical protein
1846	 47.31	0	2014214..2014714	+	166	161582000	-	VC1871	-	hypothetical protein
1847	 47.13	0	2014955..2016889	+	644	15641874	-	VC1872	-	hypothetical protein
1848	 47.64	0	2017034..2018305	+	423	15641875	-	VC1873	-	hypothetical protein
1849	 46.81	0	2018318..2019868	+	516	15641876	-	VC1874	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.