IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1724	 39.56	-1	1882271..1882495	+	74	15641751	-	VC1747	-	hypothetical protein
1725	 46.91	0	1882572..1883396	+	274	15641752	-	VC1748	-	hypothetical protein
1726	 45.23	0	1883296..1884522	+	408	15641753	-	VC1749	-	hypothetical protein
1727	 44.12	0	1884533..1885654	+	373	15641754	-	VC1750	-	hypothetical protein
1728	 45.39	0	1885670..1886548	-	292	15641755	-	VC1751	-	hypothetical protein
1729	 42.86	-1	1887312..1887437	+	41	15641756	-	VC1752	-	hypothetical protein
1730	 45.21	0	1887601..1888905	+	434	15641757	-	VC1753	-	paraquat-inducible protein A
1731	 45.80	0	1888902..1890545	+	547	15641758	-	VC1754	-	paraquat-inducible protein B
1732	 48.70	0	1890542..1891120	+	192	15641759	-	VC1755	-	hypothetical protein
1733	 51.14	0	1891336..1892430	+	364	15641760	-	VC1756	-	periplasmic linker protein, putative
1734	 52.93	+1	1892430..1895480	+	1016	15641761	-	VC1757	-	AcrB/AcrD/AcrF family transporter
1735	 44.09	0	1896092..1897327	+	411	15641762	-	VC1758	-	phage family integrase
1736	 41.09	-1	1898009..1900831	-	940	15641763	-	VC1760	-	helicase, putative
1737	 40.23	-1	1900851..1901459	-	202	15641764	-	VC1761	-	hypothetical protein
1738	 40.63	-1	1901450..1902901	-	483	15641765	-	VC1762	-	hypothetical protein
1739	 40.14	-1	1902898..1903632	-	244	15641766	-	VC1763	-	chemotaxis protein MotB-related protein
1740	 41.30	-1	1903625..1905745	-	706	15641767	-	VC1764	-	hypothetical protein
1741	 43.34	0	1905790..1908858	-	1022	15641768	-	VC1765	-	type I restriction enzyme HsdR, putative
1742	 43.27	0	1908886..1910877	-	663	15641769	-	VC1766	-	hypothetical protein
1743	 44.94	0	1910870..1912282	-	470	15641770	-	VC1767	-	hypothetical protein
1744	 40.60	-1	1912283..1913671	-	462	15641771	-	VC1768	-	hypothetical protein
1745	 43.87	0	1913628..1916009	-	793	15641772	-	VC1769	-	DNA methylase HsdM, putative
1746	 41.72	-1	1916150..1918213	-	687	15641773	-	VC1770	-	hypothetical protein
1747	 41.85	-1	1918195..1921857	-	1220	15641774	-	VC1771	-	hypothetical protein
1748	 44.83	0	1921885..1922745	+	286	15641775	-	VC1772	-	hypothetical protein
1749	 36.13	-2	1922810..1923880	-	356	15641776	-	VC1773	-	hypothetical protein
1750	 41.65	-1	1923895..1925049	-	384	15641777	-	VC1774	-	hypothetical protein
1751	 43.61	0	1925231..1926067	-	278	15641778	-	VC1775	-	hypothetical protein
1752	 43.14	-1	1926196..1927092	-	298	15641779	-	VC1776	-	N-acetylneuraminate lyase, putative
1753	 45.33	0	1927130..1928413	-	427	15641780	-	VC1777	-	hypothetical protein
1754	 41.19	-1	1928421..1928942	-	173	15641781	-	VC1778	-	hypothetical protein
1755	 44.62	0	1928993..1929958	-	321	15641782	-	VC1779	-	C4-dicarboxylate-binding periplasmic protein
1756	 34.01	-2	1929989..1930282	+	97	15641783	-	VC1780	-	hypothetical protein
1757	 47.16	0	1930173..1930895	+	240	15641784	-	VC1781	-	N-acetylmannosamine-6-phosphate 2-epimerase
1758	 45.02	0	1930883..1931746	+	287	15641785	-	VC1782	-	N-acetylmannosamine kinase
1759	 44.94	0	1931750..1932886	+	378	15641786	-	VC1783	-	N-acetylglucosamine-6-phosphate deacetylase
1760	 45.17	0	1933231..1935654	+	807	15641787	-	VC1784	-	neuraminidase
1761	 44.44	0	1935801..1936007	-	68	15641788	-	VC1785	-	transcriptional regulator
1762	 48.85	0	1936121..1936597	+	158	15641789	-	VC1786	-	DNA repair protein RadC, putative
1763	 45.65	0	1936594..1936731	+	45	15641790	-	VC1787	-	hypothetical protein
1764	 43.10	-1	1936827..1937522	-	231	15641791	-	VC1788	-	hypothetical protein
1765	 44.44	0	1937519..1938391	-	290	15641792	-	VC1789	-	transposase OrfAB, subunit B
1766	 43.19	0	1938388..1938732	-	114	15641793	-	VC1790	-	transposase OrfAB, subunit A
1767	 44.00	0	1938739..1939779	-	346	15641794	-	VC1791	-	hypothetical protein
1768	 42.78	-1	1939914..1940273	-	119	15641795	-	VC1792	-	hypothetical protein
1769	 39.15	-1	1940322..1940699	-	125	15641796	-	VC1793	-	hypothetical protein
1770	 37.82	-2	1940754..1941332	-	192	15641797	-	VC1794	-	hypothetical protein
1771	 38.94	-1	1941351..1941671	-	106	15641798	-	VC1795	-	transcriptional regulator, putative
1772	 39.73	-1	1941658..1942032	-	124	15641799	-	VC1796	-	middle operon regulator-related protein
1773	 40.04	-1	1942842..1943303	-	153	15641800	-	VC1797	-	hypothetical protein
1774	 44.53	0	1943306..1944457	-	383	15641801	-	VC1798	-	eha protein
1775	 47.72	0	1944387..1946144	-	585	15641802	-	VC1799	-	hypothetical protein
1776	 44.24	0	1946151..1947122	-	323	15641803	-	VC1800	-	hypothetical protein
1777	 34.71	-2	1947461..1947823	-	120	15641804	-	VC1801	-	hypothetical protein
1778	 38.82	-2	1947786..1948022	-	78	15641805	-	VC1802	-	hypothetical protein
1779	 40.48	-1	1948112..1948573	+	153	15641806	-	VC1803	-	hypothetical protein
1780	 48.25	0	1948800..1949114	+	104	15641807	-	VC1804	-	hypothetical protein
1781	 45.41	0	1949165..1949611	+	148	15641808	-	VC1805	-	hypothetical protein
1782	 43.36	0	1949718..1950704	+	328	15641809	-	VC1806	-	hypothetical protein
1783	 29.20	-2	1951671..1952516	+	281	15641810	-	VC1808	-	hypothetical protein
1784	 47.19	0	1952631..1952861	-	76	15641811	-	VC1809	-	transcriptional regulator, putative
1785	 43.63	0	1953461..1953664	+	67	15641812	-	VC1810	-	hypothetical protein
1786	 47.05	0	1953656..1954129	-	157	15641813	-	VC1811	-	hypothetical protein
1787	 45.95	0	1954253..1954672	-	139	15641814	-	VC1812	-	hypothetical protein
1788	 41.94	-1	1954641..1954733	-	30	15641815	-	VC1813	-	hypothetical protein
1789	 50.58	0	1954789..1956174	+	461	15641816	-	VC1814	-	deoxyribodipyrimidine photolyase
1790	 52.82	+1	1956171..1956878	+	235	15641817	-	VC1815	-	C factor cell-cell signaling protein
1791	 45.37	0	1956889..1957104	-	71	15641818	-	VC1816	-	hypothetical protein
1792	 50.40	0	1957201..1958964	-	587	15641819	-	VC1817	-	sigma-54 dependent transcriptional regulator
1793	 45.10	0	1959132..1959233	-	33	15641820	-	VC1818	-	hypothetical protein
1794	 49.57	0	1959245..1960765	+	506	15641821	-	VC1819	-	aldehyde dehydrogenase
1795	 37.41	-2	1961098..1961538	+	146	15641822	-	VC1820	-	PTS system, fructose-specific IIA component
1796	 49.79	0	1961550..1962953	+	467	15641823	-	VC1821	-	PTS system, fructose-specific IIBC component
1797	 49.52	0	1963028..1964893	-	621	15641824	-	VC1822	-	PTS system, fructose-specific IIABC component
1798	 49.33	0	1965110..1965409	+	99	15641825	-	VC1823	-	PTS system, fructose-specific IIB component
1799	 47.69	0	1965418..1966197	+	259	15641826	-	VC1824	-	PTS system, nitrogen regulatory IIA component, putative
1800	 42.74	-1	1966189..1967028	-	279	15641827	-	VC1825	-	transcriptional regulator
1801	 50.37	0	1967400..1969301	+	633	15641828	-	VC1826	-	PTS system, fructose-specific IIABC component
1802	 46.10	0	1969417..1970583	+	388	15641829	-	VC1827	-	mannose-6-phosphate isomerase
1803	 46.58	0	1970703..1971155	-	150	15641830	-	VC1828	-	hypothetical protein
1804	 42.59	-1	1971344..1971451	-	35	15641831	-	VC1829	-	hypothetical protein
1805	 44.79	0	1971429..1971524	+	31	15641832	-	VC1830	-	hypothetical protein
1806	 45.05	0	1971491..1973701	-	736	15641833	-	VC1831	-	sensor histidine kinase
1807	 45.03	0	1973909..1974481	+	190	15641834	-	VC1832	-	hypothetical protein
1808	 46.70	0	1974555..1975616	-	353	15641835	-	VC1833	-	quinolinate synthetase
1809	 46.80	0	1975790..1976554	-	254	15641836	-	VC1834	-	hypothetical protein
1810	 47.40	0	1976570..1977088	-	172	15641837	-	VC1835	-	peptidoglycan-associated lipoprotein
1811	 45.38	0	1977120..1978472	-	450	15641838	tolB	VC1836	-	translocation protein TolB
1812	 47.15	0	1978487..1979557	-	356	15641839	-	VC1837	-	tolA protein
1813	 43.08	-1	1979575..1980015	-	146	15641840	-	VC1838	-	tolR membrane protein
1814	 46.20	0	1980018..1980701	-	227	15641841	-	VC1839	-	tolQ protein
1815	 43.38	0	1980691..1981158	-	155	15641842	-	VC1840	-	hypothetical protein
1816	 47.80	0	1981267..1981584	-	105	15641843	-	VC1841	-	hypothetical protein
1817	 44.44	0	1981577..1981684	-	35	15641844	-	VC1842	-	hypothetical protein
1818	 47.05	0	1981697..1982833	-	378	15641845	-	VC1843	-	cytochrome d ubiquinol oxidase, subunit II
1819	 47.05	0	1982851..1984476	-	541	15641846	-	VC1844	-	cytochrome d ubiquinol oxidase, subunit I
1820	 47.16	0	1984896..1985900	-	334	15641847	ruvB	VC1845	-	Holliday junction DNA helicase B
1821	 48.29	0	1985956..1986570	-	204	15641848	ruvA	VC1846	-	Holliday junction DNA helicase motor protein
1822	 49.62	0	1986667..1987188	-	173	15641849	ruvC	VC1847	-	Holliday junction resolvase
1823	 46.59	0	1987276..1988655	-	459	15641850	cysS	VC1848	-	cysteinyl-tRNA synthetase
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.