IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1630	 46.89	0	1780981..1782735	-	584	15641657	-	VC1652	-	response regulator VieA
1631	 43.82	0	1782740..1786180	-	1146	15641658	-	VC1653	-	sensory box sensor histidine kinase/response regulator VieS
1632	 42.34	-1	1786522..1786632	+	36	15641659	-	VC1654	-	hypothetical protein
1633	 49.93	0	1786971..1788326	+	451	15641660	-	VC1655	-	magnesium transporter
1634	 48.73	0	1788409..1789272	-	287	15641661	-	VC1656	-	hypothetical protein
1635	 40.43	-1	1789284..1789424	+	46	15641662	-	VC1657	-	hypothetical protein
1636	 47.85	0	1789608..1790861	+	417	15641663	-	VC1658	-	serine transporter
1637	 52.00	+1	1791030..1791977	+	315	15641664	-	VC1659	-	hypothetical protein
1638	 44.59	0	1794166..1794387	+	73	15641665	-	VC1661	-	hypothetical protein
1639	 48.69	0	1794393..1794659	-	88	15641666	-	VC1662	-	hypothetical protein
1640	 47.07	0	1794806..1795249	+	147	15641667	-	VC1663	-	heat shock protein HslJ
1641	 49.17	0	1795457..1796605	+	382	15641668	-	VC1664	-	hypothetical protein
1642	 50.09	0	1796619..1798319	+	566	15641669	-	VC1665	-	ABC transporter, permease protein, putative
1643	 48.72	0	1798285..1798947	+	220	15641670	-	VC1666	-	ABC transporter, ATP-binding protein, putative
1644	 49.28	0	1798940..1799560	+	206	15641671	-	VC1667	-	hypothetical protein
1645	 48.02	0	1799619..1800326	-	235	15641672	-	VC1668	-	pseudouridine synthase Rlu family protein
1646	 46.92	0	1800425..1801771	-	448	15641673	-	VC1669	-	sodium-dependent transporter, putative
1647	 48.93	0	1802327..1803781	+	484	15641674	cls	VC1670	-	cardiolipin synthetase
1648	 50.46	0	1803862..1805052	+	396	15641675	-	VC1671	-	cystathionine beta-lyase
1649	 48.28	0	1805139..1805720	-	193	15641676	-	VC1672	-	DNA-3-methyladenine glycosidase I
1650	 49.87	0	1805807..1808920	-	1037	15641677	-	VC1673	-	AcrB/AcrD/AcrF family transporter
1651	 49.64	0	1808898..1810007	-	369	15641678	-	VC1674	-	periplasmic linker protein, putative
1652	 51.07	0	1809979..1811010	-	343	15641679	-	VC1675	-	multidrug resistance protein, putative
1653	 52.04	+1	1811182..1811598	-	138	15641680	-	VC1676	-	phage shock protein C
1654	 49.15	0	1811564..1811797	-	77	15641681	pspB	VC1677	-	phage shock protein B
1655	 46.79	0	1811811..1812479	-	222	15641682	-	VC1678	-	phage shock protein A
1656	 50.44	0	1812689..1813705	+	338	15641683	-	VC1679	-	psp operon transcriptional activator
1657	 49.17	0	1813819..1815441	+	540	15641684	-	VC1680	-	peptide ABC transporter, periplasmic peptide-binding protein
1658	 47.98	0	1815441..1816403	+	320	15641685	-	VC1681	-	peptide ABC transporter, permease protein
1659	 48.99	0	1816390..1817277	+	295	15641686	-	VC1682	-	peptide ABC transporter, permease protein
1660	 50.00	0	1817277..1818272	+	331	15641687	-	VC1683	-	peptide ABC transporter, ATP-binding protein
1661	 49.56	0	1818269..1819057	+	262	15641688	-	VC1684	-	peptide ABC transporter, ATP-binding protein
1662	 50.84	0	1819058..1819828	+	256	15641689	-	VC1685	-	hypothetical protein
1663	 45.95	0	1819865..1820419	-	184	15641690	-	VC1686	-	hypothetical protein
1664	 48.23	0	1820389..1821294	-	301	15641691	-	VC1687	-	putative manganese-dependent inorganic pyrophosphatase
1665	 49.60	0	1821441..1822688	+	415	15641692	-	VC1688	-	hypothetical protein
1666	 49.38	0	1822752..1823312	-	186	15641693	-	VC1689	-	hypothetical protein
1667	 50.49	0	1823364..1824488	-	374	15641694	-	VC1690	-	alpha-1,6-galactosidase, putative
1668	 42.42	-1	1824544..1824642	+	32	15641695	-	VC1691	-	hypothetical protein
1669	 51.44	0	1824695..1827157	-	820	15641696	-	VC1692	-	trimethylamine-N-oxide reductase
1670	 49.54	0	1827181..1828365	-	394	15641697	-	VC1693	-	cytochrome c-type protein TorC
1671	 45.21	0	1828412..1828630	-	72	15641698	-	VC1694	-	napE protein
1672	 46.38	0	1829274..1830116	-	280	15641699	-	VC1695	-	formate transporter 1, putative
1673	 47.51	0	1830321..1830701	+	126	15641700	-	VC1696	-	DNA-binding protein inhibitor Id-2-related protein
1674	 49.46	0	1830805..1831635	+	276	15641701	-	VC1697	-	hypothetical protein
1675	 47.07	0	1831628..1832275	+	215	15641702	-	VC1698	-	hypothetical protein
1676	 44.81	0	1832408..1832677	+	89	15641703	-	VC1699	-	hypothetical protein
1677	 45.79	0	1832906..1833451	+	181	15641704	-	VC1700	-	intracellular septation protein A
1678	 48.53	0	1833589..1834029	+	146	15641705	-	VC1701	-	hypothetical protein
1679	 50.51	0	1834104..1834400	+	98	15641706	-	VC1702	-	YciI-like protein
1680	 50.00	0	1834309..1834800	+	163	15641707	-	VC1703	-	hypothetical protein
1681	 50.35	0	1835075..1837360	-	761	15641708	-	VC1704	-	5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
1682	 48.96	0	1837614..1837709	+	31	15641709	-	VC1705	-	hypothetical protein
1683	 52.18	+1	1837756..1838673	+	305	15641710	-	VC1706	-	transcriptional activator MetR
1684	 44.61	0	1838680..1838883	-	67	15641711	-	VC1707	-	hypothetical protein
1685	 48.91	0	1838997..1839683	-	228	15641712	-	VC1708	-	hypothetical protein
1686	 48.14	0	1839907..1842675	+	922	15641713	-	VC1709	-	zinc protease
1687	 47.62	0	1842809..1845265	-	818	15641714	-	VC1710	-	hypothetical protein
1688	 50.80	0	1845545..1847914	+	789	15641715	-	VC1711	-	hypothetical protein
1689	 48.29	0	1847962..1848576	-	204	15641716	-	VC1712	-	hypothetical protein
1690	 48.87	0	1848654..1849097	+	147	15641717	-	VC1713	-	AsnC family transcriptional regulator
1691	 52.23	+1	1849179..1853654	-	1491	15641718	mukB	VC1714	-	cell division protein MukB
1692	 52.15	+1	1853651..1854394	-	247	15641719	-	VC1715	-	condesin subunit E
1693	 50.15	0	1854354..1855691	-	445	15641720	-	VC1716	-	condesin subunit F
1694	 48.40	0	1855703..1856485	-	260	15641721	-	VC1717	-	putative metallothionein SmtA
1695	 49.71	0	1856575..1857423	+	282	15641722	-	VC1718	-	hypothetical protein
1696	 47.80	0	1857523..1858227	-	234	15641723	-	VC1719	-	DNA-binding transcriptional regulator TorR
1697	 46.46	0	1858452..1859114	+	220	15641724	torD	VC1720	-	chaperone protein TorD
1698	 48.37	0	1859521..1860531	+	336	15641725	-	VC1721	-	LacI family transcription regulator
1699	 44.90	0	1860890..1861477	+	195	15641726	-	VC1722	-	hypothetical protein
1700	 47.25	0	1861832..1862521	+	229	15641727	-	VC1723	-	hypothetical protein
1701	 54.49	+1	1862555..1862866	+	103	15641728	-	VC1724	-	hypothetical protein
1702	 47.50	0	1862871..1863689	-	272	15641729	-	VC1725	-	beta-ketoadipate enol-lactone hydrolase, putative
1703	 48.80	0	1863877..1865331	-	484	15641730	glgA	VC1726	-	glycogen synthase
1704	 46.55	0	1865333..1866550	-	405	15641731	glgC	VC1727	-	glucose-1-phosphate adenylyltransferase
1705	 38.52	-2	1866682..1866816	+	44	15641732	-	VC1728	-	hypothetical protein
1706	 46.85	0	1866932..1867042	+	36	15641733	-	VC1729	-	hypothetical protein
1707	 50.32	0	1867219..1869849	-	876	15641734	-	VC1730	-	DNA topoisomerase I
1708	 38.15	-2	1870186..1870434	+	82	15641735	-	VC1731	-	hypothetical protein
1709	 50.66	0	1870525..1871805	-	426	15641736	-	VC1732	-	3-phosphoshikimate 1-carboxyvinyltransferase
1710	 43.14	-1	1871809..1872012	+	67	15641737	-	VC1733	-	hypothetical protein
1711	 42.86	-1	1871987..1872091	+	34	15641738	-	VC1734	-	hypothetical protein
1712	 50.55	0	1872072..1872803	+	243	15641739	aat	VC1735	-	leucyl/phenylalanyl-tRNA--protein transferase
1713	 46.30	0	1872807..1873508	+	233	15641740	-	VC1736	-	arginyl-tRNA-protein transferase
1714	 43.84	0	1873592..1873810	+	72	15641741	infA	VC1737	-	translation initiation factor IF-1
1715	 50.33	0	1874114..1875013	-	299	15641742	-	VC1738	-	hypothetical protein
1716	 49.16	0	1875028..1875324	-	98	15641743	-	VC1739	-	hypothetical protein
1717	 51.60	0	1875517..1877799	-	760	15641744	-	VC1740	-	acyl-CoA dehydrogenase
1718	 47.70	0	1877855..1878529	-	224	15641745	-	VC1741	-	TetR family transcriptional regulator
1719	 42.03	-1	1878784..1878921	+	45	15641746	-	VC1742	-	hypothetical protein
1720	 49.32	0	1878900..1879925	+	341	15641747	-	VC1743	-	hypothetical protein
1721	 48.58	0	1879970..1880251	+	93	15641748	-	VC1744	-	hypothetical protein
1722	 50.24	0	1880232..1881698	-	488	15641749	-	VC1745	-	succinate-semialdehyde dehydrogenase
1723	 47.78	0	1881716..1882345	-	209	15641750	-	VC1746	-	TetR family transcriptional regulator
1724	 39.56	-1	1882271..1882495	+	74	15641751	-	VC1747	-	hypothetical protein
1725	 46.91	0	1882572..1883396	+	274	15641752	-	VC1748	-	hypothetical protein
1726	 45.23	0	1883296..1884522	+	408	15641753	-	VC1749	-	hypothetical protein
1727	 44.12	0	1884533..1885654	+	373	15641754	-	VC1750	-	hypothetical protein
1728	 45.39	0	1885670..1886548	-	292	15641755	-	VC1751	-	hypothetical protein
1729	 42.86	-1	1887312..1887437	+	41	15641756	-	VC1752	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.