IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
119	 50.32	0	113933..114715	-	260	15640151	hemD	VC0119	-	uroporphyrinogen-III synthase
120	 54.19	+1	114761..115714	-	317	15640152	hemC	VC0120	-	porphobilinogen deaminase
121	 39.46	-1	115891..116037	-	48	15640153	-	VC0121	-	hypothetical protein
122	 48.82	0	116053..118584	+	843	15640154	cyaA	VC0122	-	adenylate cyclase
123	 48.57	0	118690..119004	-	104	15640155	cyaY	VC0123	-	frataxin-like protein
124	 50.40	0	119229..120482	+	417	15640156	-	VC0125	-	diaminopimelate decarboxylase
125	 52.23	+1	120494..121324	+	276	161582035	dapF	VC0126	-	diaminopimelate epimerase
126	 52.50	+1	121338..122036	+	232	15640158	-	VC0127	-	hypothetical protein
127	 51.82	+1	122005..122940	+	311	15640159	xerC	VC0128	-	site-specific tyrosine recombinase XerC
128	 52.08	+1	122943..123662	+	239	15640160	-	VC0129	-	hypothetical protein
129	 52.09	+1	123772..126261	+	829	15640161	-	VC0130	-	GGDEF family protein
130	 54.77	+1	126294..126890	-	198	15640162	-	VC0131	-	hypothetical protein
131	 52.43	+1	126887..128431	-	514	15640163	-	VC0132	-	hypothetical protein
132	 47.09	0	128444..128632	+	62	15640164	-	VC0133	-	hypothetical protein
133	 47.95	0	128715..129542	-	275	15640165	-	VC0134	-	hypothetical protein
134	 47.00	0	129657..130673	-	338	15640166	-	VC0135	-	lysophospholipase L2
135	 47.90	0	130748..131365	+	205	15640167	rhtB	VC0136	-	homoserine/homoserine lactone efflux protein
136	 48.73	0	131313..132611	+	432	15640168	-	VC0137	-	hypothetical protein
137	 54.17	+1	132619..132738	-	39	15640169	-	VC0138	-	hypothetical protein
138	 46.50	0	132791..133261	-	156	15640170	-	VC0139	-	DPS family protein
139	 45.45	0	133431..133760	-	109	15640171	-	VC0140	-	hypothetical protein
140	 40.95	-1	133799..133903	+	34	15640172	-	VC0141	-	hypothetical protein
141	 43.09	-1	133965..134333	+	122	15640173	-	VC0142	-	hypothetical protein
142	 25.58	-2	134836..135093	+	85	15640174	-	VC0143	-	hypothetical protein
143	 48.57	0	135210..135839	+	209	15640175	-	VC0144	-	hypothetical protein
144	 44.57	0	135888..136154	-	88	15640176	-	VC0145	-	hypothetical protein
145	 49.83	0	136151..136750	-	199	15640177	-	VC0146	-	hypothetical protein
146	 49.66	0	136954..138129	+	391	15640178	-	VC0147	-	cell division protein FtsY
147	 50.85	0	138151..138852	+	233	15640179	-	VC0148	-	cell division ATP-binding protein FtsE
148	 48.74	0	138842..139834	+	330	15640180	-	VC0149	-	cell division protein FtsX
149	 49.94	0	140004..140864	+	286	15640181	-	VC0150	-	RNA polymerase factor sigma-32
150	 49.32	0	141066..142466	-	466	15640182	-	VC0151	-	soluble pyridine nucleotide transhydrogenase
151	 51.87	+1	142774..143415	+	213	15640183	-	VC0152	-	DNA-binding transcriptional repressor FabR
152	 48.12	0	143455..143826	+	123	15640184	-	VC0153	-	hypothetical protein
153	 47.84	0	143863..144972	-	369	15640185	-	VC0154	-	tRNA (uracil-5-)-methyltransferase
154	 43.25	0	145370..147205	+	611	15640186	-	VC0156	-	vitamin B12 receptor
155	 46.64	0	147278..148885	-	535	15640187	-	VC0157	-	alkaline serine protease
156	 47.62	0	149278..150075	+	265	15640188	-	VC0158	-	glutamate racemase
157	 44.44	0	150041..150499	-	152	15640189	-	VC0159	-	RNA-binding protein
158	 35.00	-2	150905..151024	+	39	15640190	-	VC0160	-	hypothetical protein
159	 48.16	0	156407..157303	-	298	15640191	-	VC0161	-	DNA-binding transcriptional regulator IlvY
160	 47.61	0	157441..158925	+	494	15640192	-	VC0162	-	ketol-acid reductoisomerase
161	 46.03	0	159052..159303	-	83	15640193	-	VC0163	-	hypothetical protein
162	 50.05	0	159419..162529	-	1036	15640194	-	VC0164	-	multidrug resistance protein, putative
163	 47.15	0	162541..163647	-	368	15640195	-	VC0165	-	hypothetical protein
164	 42.38	-1	163666..164262	-	198	15640196	-	VC0166	-	TetR family transcriptional regulator
165	 48.76	0	164408..166423	+	671	15640197	-	VC0167	-	ATP-dependent DNA helicase Rep
166	 50.25	0	166490..166897	-	135	15640198	-	VC0168	-	cytochrome c5
167	 30.36	-2	168232..168399	-	55	15640199	-	VC0169	-	hypothetical protein
168	 50.29	0	168532..170247	+	571	15640200	-	VC0170	-	peptide ABC transporter, ATP-binding protein
169	 47.70	0	170267..171895	+	542	15640201	-	VC0171	-	peptide ABC transporter, periplasmic peptide-binding protein
170	 50.15	0	171999..173027	+	342	15640202	-	VC0172	-	peptide ABC transporter, permease protein
171	 50.69	0	173030..173968	+	312	15640203	-	VC0173	-	peptide ABC transporter, permease protein
172	 52.00	+1	174143..175090	+	315	15640204	-	VC0174	-	hypothetical protein
173	 36.90	-2	175343..176941	-	532	15640205	-	VC0175	-	deoxycytidylate deaminase-related protein
174	 39.16	-1	177450..177758	-	102	15640206	-	VC0176	-	transcriptional regulator, putative
175	 37.77	-2	177861..178424	+	187	15640207	-	VC0177	-	hypothetical protein
176	 42.51	-1	179338..180405	+	355	15640208	-	VC0178	-	patatin-related protein
177	 41.80	-1	180419..181729	+	436	15640209	-	VC0179	-	hypothetical protein
178	 43.53	0	181732..183486	+	584	15640210	-	VC0180	-	hypothetical protein
179	 45.65	0	183476..183946	+	156	15640211	-	VC0181	-	hypothetical protein
180	 37.27	-2	183957..184388	-	143	15640212	-	VC0182	-	hypothetical protein
181	 37.55	-2	184360..186471	-	703	15640213	-	VC0183	-	hypothetical protein
182	 39.61	-1	186481..188169	-	562	15640214	-	VC0184	-	hypothetical protein
183	 36.95	-2	188166..189380	-	404	15640215	-	VC0185	-	transposase, putative
184	 52.16	+1	189457..190821	-	454	15640216	-	VC0186	-	glutathione reductase
185	 51.19	0	190915..191754	-	279	15640217	-	VC0187	-	hypothetical protein
186	 52.13	+1	192034..194076	+	680	15640218	-	VC0188	-	oligopeptidase A
187	 48.48	0	194101..194199	+	32	15640219	-	VC0189	-	hypothetical protein
188	 53.08	+1	194214..196385	+	723	15640220	uvrD	VC0190	-	DNA-dependent helicase II
189	 51.42	0	197130..197798	-	222	15640221	-	VC0191	-	hypothetical protein
190	 50.06	0	197873..198685	-	270	15640222	-	VC0192	-	AraC/XylS family transcriptional regulator
191	 46.88	0	198722..198817	-	31	15640223	-	VC0193	-	hypothetical protein
192	 55.29	+1	198833..200599	-	588	15640224	-	VC0194	-	gamma-glutamyltranspeptidase
193	 52.26	+1	200761..201669	-	302	15640225	-	VC0195	-	rarD protein
194	 52.89	+1	201830..203665	+	611	161582034	-	VC0196	-	ATP-dependent DNA helicase RecQ
195	 52.67	+1	203658..203957	+	99	15640227	-	VC0197	-	gene 3 protein-related protein
196	 50.00	0	204113..204490	+	125	15640228	-	VC0198	-	hypothetical protein
197	 50.71	0	204526..206361	-	611	15640229	-	VC0199	-	hemolysin secretion ATP-binding protein, putative
198	 49.56	0	206433..208589	+	718	15640230	-	VC0200	-	iron(III) compound receptor
199	 52.33	+1	208648..209505	+	285	15640231	-	VC0201	-	iron(III) ABC transporter, ATP-binding protein
200	 53.54	+1	209496..210455	+	319	15640232	-	VC0202	-	iron(III) ABC transporter, periplasmic iron-compound-binding protein
201	 56.01	+2	210452..212413	+	653	15640233	-	VC0203	-	iron-hydroxamate transporter permease subunit
202	 53.36	+1	212440..213288	-	282	15640234	-	VC0204	-	hypothetical protein
203	 35.94	-2	213331..213522	+	63	15640235	-	VC0205	-	hypothetical protein
204	 53.70	+1	213504..214421	+	305	15640236	murQ	VC0206	-	N-acetylmuramic acid-6-phosphate etherase
205	 51.90	+1	214449..215897	+	482	15640237	murP	VC0207	-	N-acetylmuramic acid phosphotransfer permease
206	 43.35	0	216004..216492	-	162	15640238	-	VC0208	-	hypothetical protein
207	 52.13	+1	216558..217424	-	288	15640239	-	VC0209	-	hypothetical protein
208	 52.72	+1	217588..218304	+	238	161582033	rph	VC0210	-	ribonuclease PH
209	 48.13	0	218670..219311	+	213	161582032	pyrE	VC0211	-	orotate phosphoribosyltransferase
210	 52.76	+1	219397..220374	-	325	15640242	-	VC0212	-	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase
211	 49.53	0	220385..221341	-	318	15640243	-	VC0213	-	lipid A biosynthesis lauroyl acyltransferase
212	 48.05	0	221338..221928	-	196	161582031	slmA	VC0214	-	nucleoid occlusion protein
213	 55.25	+1	222087..223286	-	399	15640245	-	VC0215	-	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase
214	 50.44	0	223454..225148	+	564	15640246	-	VC0216	-	methyl-accepting chemotaxis protein
215	 51.26	0	225260..225934	+	224	15640247	radC	VC0217	-	DNA repair protein RadC
216	 44.73	0	226229..226465	+	78	15640248	-	VC0218	-	ribosomal protein L28
217	 42.86	-1	226479..226646	+	55	15640249	rpmG	VC0219	-	50S ribosomal protein L33
218	 49.28	0	226867..227355	+	162	15640250	-	VC0220	-	hypothetical protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.