version 1.0
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149 2742 proteins Pos %G+C SD Location Strand Length PID Gene Synonym Code Product 1348 45.79 0 1452643..1453581 + 312 15641375 - VC1363 - siroheme synthase component enzyme 1349 47.81 0 1453647..1454468 - 273 15641376 - VC1364 - hypothetical protein 1350 47.97 0 1454744..1455481 + 245 15641377 - VC1365 - hypothetical protein 1351 48.71 0 1455494..1456189 + 231 15641378 - VC1366 - queuosine biosynthesis protein QueC 1352 45.41 0 1456161..1458164 - 667 15641379 - VC1367 - GGDEF family protein 1353 41.37 -1 1458335..1458583 + 82 15641380 - VC1368 - hypothetical protein 1354 45.82 0 1458740..1459756 + 338 15641381 - VC1369 - hypothetical protein 1355 44.29 0 1459753..1461084 + 443 15641382 - VC1370 - GGDEF family protein 1356 44.64 0 1461135..1461815 - 226 15641383 - VC1371 - hypothetical protein 1357 43.77 0 1462189..1463367 + 392 15641384 - VC1372 - GGDEF family protein 1358 51.56 0 1463479..1466325 - 948 15641385 - VC1373 - DnaK-related protein 1359 52.69 +1 1466367..1468262 - 631 15641386 - VC1374 - DnaK-related protein 1360 48.83 0 1468262..1468990 - 242 15641387 - VC1375 - hypothetical protein 1361 45.53 0 1469402..1470967 + 521 15641388 - VC1376 - GGDEF family protein 1362 47.46 0 1471032..1471562 + 176 15641389 - VC1377 - hypothetical protein 1363 42.08 -1 1471564..1471746 + 60 15641390 - VC1378 - hypothetical protein 1364 50.97 0 1471848..1472312 - 154 15641391 - VC1379 - hypothetical protein 1365 49.86 0 1472359..1472709 - 116 15641392 - VC1380 - hypothetical protein 1366 48.10 0 1472744..1472953 - 69 15641393 - VC1381 - hypothetical protein 1367 50.48 0 1472998..1476840 + 1280 161582005 - VC1382 - ATP-dependent RNA helicase HrpA 1368 44.70 0 1476818..1476949 - 43 15641395 - VC1383 - hypothetical protein 1369 48.45 0 1476980..1477462 + 160 15641396 - VC1384 - hypothetical protein 1370 48.65 0 1477495..1477605 - 36 15641397 - VC1385 - hypothetical protein 1371 52.77 +1 1477679..1479031 + 450 15641398 - VC1386 - putative chaperone 1372 44.44 0 1479065..1479163 + 32 15641399 - VC1387 - hypothetical protein 1373 50.93 0 1479156..1480172 + 338 15641400 lplA VC1388 - lipoate-protein ligase A 1374 47.78 0 1480408..1480587 + 59 15641401 - VC1389 - hypothetical protein 1375 52.79 +1 1480565..1481515 - 316 15641402 - VC1390 - LysR family transcriptional regulator 1376 52.45 +1 1481602..1483008 + 468 15641403 - VC1391 - multidrug transporter, putative 1377 53.40 +1 1483164..1484678 + 504 15641404 - VC1392 - deoxyribodipyrimidine photolyase, putative 1378 48.89 0 1484824..1485138 + 104 15641405 - VC1393 - sugE protein 1379 42.72 -1 1485193..1486428 - 411 15641406 - VC1394 - methyl-accepting chemotaxis protein 1380 42.53 -1 1486808..1487068 - 86 15641407 - VC1396 - hypothetical protein 1381 46.02 0 1487058..1489343 - 761 15641408 - VC1397 - chemotaxis protein CheA 1382 44.27 0 1489340..1489714 - 124 15641409 - VC1398 - chemotaxis protein CheY 1383 40.72 -1 1489689..1490555 - 288 15641410 - VC1399 - chemotaxis protein methyltransferase CheR 1384 45.21 0 1490566..1491222 - 218 15641411 - VC1400 - hypothetical protein 1385 48.75 0 1491209..1492285 - 358 15641412 - VC1401 - protein-glutamate methylesterase CheB 1386 44.47 0 1492306..1493868 - 520 15641413 - VC1402 - purine-binding chemotaxis protein Chew, putative 1387 44.81 0 1493881..1495806 - 641 15641414 - VC1403 - methyl-accepting chemotaxis protein 1388 27.64 -2 1495940..1496062 - 40 15641415 - VC1404 - hypothetical protein 1389 44.80 0 1496302..1498089 + 595 15641416 - VC1405 - methyl-accepting chemotaxis protein 1390 44.50 0 1498168..1499484 + 438 15641417 - VC1406 - methyl-accepting chemotaxis protein 1391 48.99 0 1499666..1500859 + 397 15641418 - VC1407 - ATP-dependent RNA helicase RhlE 1392 43.78 0 1500918..1501520 - 200 15641419 - VC1408 - TetR family transcriptional regulator 1393 48.87 0 1501627..1503081 + 484 15641420 - VC1409 - multidrug resistance protein, putative 1394 49.71 0 1503062..1504282 + 406 15641421 - VC1410 - multidrug resistance protein VceA 1395 46.81 0 1504292..1505827 + 511 15641422 - VC1411 - multidrug resistance protein VceB 1396 44.44 0 1505781..1505897 + 38 15641423 - VC1412 - hypothetical protein 1397 44.73 0 1505902..1507638 - 578 15641424 - VC1413 - methyl-accepting chemotaxis protein 1398 48.13 0 1507860..1509434 - 524 15641425 - VC1414 - thermostable carboxypeptidase 1 1399 49.52 0 1509632..1510150 + 172 15641426 - VC1415 - hcp protein 1400 49.48 0 1510278..1513769 + 1163 15641427 - VC1416 - vgrG protein 1401 42.86 -1 1513748..1514608 + 286 15641428 - VC1417 - hypothetical protein 1402 39.25 -1 1514611..1516536 + 641 15641429 - VC1418 - hypothetical protein 1403 34.68 -2 1516533..1517276 + 247 15641430 - VC1419 - hypothetical protein 1404 39.84 -1 1517421..1518158 + 245 15641431 - VC1420 - hypothetical protein 1405 44.60 0 1518246..1518884 + 212 15641432 - VC1421 - hypothetical protein 1406 49.89 0 1518957..1520333 - 458 15641433 - VC1422 - sodium/alanine symporter 1407 42.72 -1 1521011..1521745 + 244 15641434 - VC1423 - hypothetical protein 1408 44.99 0 1521892..1522929 - 345 15641435 - VC1424 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1409 44.96 0 1523041..1524141 - 366 15641436 - VC1425 - spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein 1410 45.01 0 1524175..1524945 - 256 15641437 potC VC1426 - spermidine/putrescine ABC transporter membrane protein 1411 44.83 0 1524945..1525805 - 286 15641438 potB VC1427 - spermidine/putrescine ABC transporter membrane protein 1412 44.89 0 1525786..1526919 - 377 15641439 potA VC1428 - putrescine/spermidine ABC transporter ATPase protein 1413 43.03 -1 1527205..1528050 + 281 15641440 - VC1429 - hypothetical protein 1414 43.66 0 1528040..1528843 + 267 15641441 - VC1430 - bax protein, putative 1415 44.09 0 1528845..1529504 + 219 15641442 - VC1431 - hypothetical protein 1416 44.37 0 1529581..1530513 - 310 15641443 - VC1432 - hypothetical protein 1417 46.52 0 1530639..1531586 - 315 15641444 - VC1433 - universal stress protein UspE 1418 43.29 0 1531716..1532468 - 250 15641445 - VC1434 - fumarate/nitrate reduction transcriptional regulator 1419 49.78 0 1532558..1533232 - 224 15641446 - VC1435 - hypothetical protein 1420 41.82 -1 1533229..1533393 - 54 15641447 - VC1436 - FixS-related protein 1421 46.78 0 1533397..1535769 - 790 15641448 - VC1437 - cation transporter E1-E2 family ATPase 1422 42.98 -1 1535774..1536250 - 158 15641449 - VC1438 - hypothetical protein 1423 46.18 0 1536329..1537309 - 326 15641450 - VC1439 - cytochrome c oxidase, subunit CcoP 1424 43.03 -1 1537317..1537481 - 54 15641451 - VC1440 - cytochrome c oxidase, subunit CcoQ 1425 44.61 0 1537493..1538113 - 206 15641452 - VC1441 - cytochrome c oxidase, subunit CcoO 1426 47.63 0 1538127..1539560 - 477 15641453 - VC1442 - cytochrome c oxidase, subunit CcoN 1427 46.98 0 1539789..1540169 + 126 15641454 - VC1443 - hypothetical protein 1428 43.10 -1 1540238..1541455 + 405 15641455 - VC1444 - hypothetical protein 1429 38.92 -1 1541452..1543170 + 572 15641456 - VC1445 - sensor histidine kinase/response regulator 1430 49.58 0 1543231..1545396 - 721 15641457 - VC1446 - toxin secretion transporter, putative 1431 50.43 0 1545399..1546802 - 467 15641458 - VC1447 - RTX toxin transporter 1432 45.08 0 1546757..1548919 - 720 15641459 - VC1448 - RTX toxin transporter 1433 41.67 -1 1549277..1549636 + 119 15641460 - VC1449 - hypothetical protein 1434 49.13 0 1549662..1550123 + 153 15641461 - VC1450 - RTX toxin activating protein 1435 48.67 0 1550108..1563784 + 4558 15641462 - VC1451 - RTX toxin RtxA 1436 37.33 -2 1564152..1564376 - 74 15641463 - VC1452 - RstC protein 1437 45.33 0 1564470..1564844 - 124 15641464 - VC1453 - RstB1 protein 1438 45.56 0 1564822..1565901 - 359 15641465 - VC1454 - RstA1 protein 1439 37.76 -2 1566027..1566365 + 112 15641466 - VC1455 - transcriptional repressor RstR 1440 32.53 -2 1566967..1567341 - 124 15641467 - VC1456 - cholera enterotoxin, B subunit 1441 38.48 -2 1567338..1568114 - 258 15641468 - VC1457 - cholera enterotoxin, A subunit 1442 49.17 0 1568213..1569412 - 399 15641469 - VC1458 - zona occludens toxin 1443 44.56 0 1569409..1569702 - 97 15641470 - VC1459 - accessory cholera enterotoxin 1444 48.68 0 1569699..1570982 - 427 15641471 - VC1460 - hypothetical protein 1445 47.39 0 1570993..1571241 - 82 15641472 - VC1461 - colonization factor 1446 44.79 0 1571377..1571760 - 127 15641473 - VC1462 - RstB2 protein 1447 45.65 0 1571738..1572817 - 359 15641474 - VC1463 - RstA2 protein 47.43 MEAN 4.26 STD DEV
Last Updated: Dec 04, 2008
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.
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1.0