IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1348	 45.79	0	1452643..1453581	+	312	15641375	-	VC1363	-	siroheme synthase component enzyme
1349	 47.81	0	1453647..1454468	-	273	15641376	-	VC1364	-	hypothetical protein
1350	 47.97	0	1454744..1455481	+	245	15641377	-	VC1365	-	hypothetical protein
1351	 48.71	0	1455494..1456189	+	231	15641378	-	VC1366	-	queuosine biosynthesis protein QueC
1352	 45.41	0	1456161..1458164	-	667	15641379	-	VC1367	-	GGDEF family protein
1353	 41.37	-1	1458335..1458583	+	82	15641380	-	VC1368	-	hypothetical protein
1354	 45.82	0	1458740..1459756	+	338	15641381	-	VC1369	-	hypothetical protein
1355	 44.29	0	1459753..1461084	+	443	15641382	-	VC1370	-	GGDEF family protein
1356	 44.64	0	1461135..1461815	-	226	15641383	-	VC1371	-	hypothetical protein
1357	 43.77	0	1462189..1463367	+	392	15641384	-	VC1372	-	GGDEF family protein
1358	 51.56	0	1463479..1466325	-	948	15641385	-	VC1373	-	DnaK-related protein
1359	 52.69	+1	1466367..1468262	-	631	15641386	-	VC1374	-	DnaK-related protein
1360	 48.83	0	1468262..1468990	-	242	15641387	-	VC1375	-	hypothetical protein
1361	 45.53	0	1469402..1470967	+	521	15641388	-	VC1376	-	GGDEF family protein
1362	 47.46	0	1471032..1471562	+	176	15641389	-	VC1377	-	hypothetical protein
1363	 42.08	-1	1471564..1471746	+	60	15641390	-	VC1378	-	hypothetical protein
1364	 50.97	0	1471848..1472312	-	154	15641391	-	VC1379	-	hypothetical protein
1365	 49.86	0	1472359..1472709	-	116	15641392	-	VC1380	-	hypothetical protein
1366	 48.10	0	1472744..1472953	-	69	15641393	-	VC1381	-	hypothetical protein
1367	 50.48	0	1472998..1476840	+	1280	161582005	-	VC1382	-	ATP-dependent RNA helicase HrpA
1368	 44.70	0	1476818..1476949	-	43	15641395	-	VC1383	-	hypothetical protein
1369	 48.45	0	1476980..1477462	+	160	15641396	-	VC1384	-	hypothetical protein
1370	 48.65	0	1477495..1477605	-	36	15641397	-	VC1385	-	hypothetical protein
1371	 52.77	+1	1477679..1479031	+	450	15641398	-	VC1386	-	putative chaperone
1372	 44.44	0	1479065..1479163	+	32	15641399	-	VC1387	-	hypothetical protein
1373	 50.93	0	1479156..1480172	+	338	15641400	lplA	VC1388	-	lipoate-protein ligase A
1374	 47.78	0	1480408..1480587	+	59	15641401	-	VC1389	-	hypothetical protein
1375	 52.79	+1	1480565..1481515	-	316	15641402	-	VC1390	-	LysR family transcriptional regulator
1376	 52.45	+1	1481602..1483008	+	468	15641403	-	VC1391	-	multidrug transporter, putative
1377	 53.40	+1	1483164..1484678	+	504	15641404	-	VC1392	-	deoxyribodipyrimidine photolyase, putative
1378	 48.89	0	1484824..1485138	+	104	15641405	-	VC1393	-	sugE protein
1379	 42.72	-1	1485193..1486428	-	411	15641406	-	VC1394	-	methyl-accepting chemotaxis protein
1380	 42.53	-1	1486808..1487068	-	86	15641407	-	VC1396	-	hypothetical protein
1381	 46.02	0	1487058..1489343	-	761	15641408	-	VC1397	-	chemotaxis protein CheA
1382	 44.27	0	1489340..1489714	-	124	15641409	-	VC1398	-	chemotaxis protein CheY
1383	 40.72	-1	1489689..1490555	-	288	15641410	-	VC1399	-	chemotaxis protein methyltransferase CheR
1384	 45.21	0	1490566..1491222	-	218	15641411	-	VC1400	-	hypothetical protein
1385	 48.75	0	1491209..1492285	-	358	15641412	-	VC1401	-	protein-glutamate methylesterase CheB
1386	 44.47	0	1492306..1493868	-	520	15641413	-	VC1402	-	purine-binding chemotaxis protein Chew, putative
1387	 44.81	0	1493881..1495806	-	641	15641414	-	VC1403	-	methyl-accepting chemotaxis protein
1388	 27.64	-2	1495940..1496062	-	40	15641415	-	VC1404	-	hypothetical protein
1389	 44.80	0	1496302..1498089	+	595	15641416	-	VC1405	-	methyl-accepting chemotaxis protein
1390	 44.50	0	1498168..1499484	+	438	15641417	-	VC1406	-	methyl-accepting chemotaxis protein
1391	 48.99	0	1499666..1500859	+	397	15641418	-	VC1407	-	ATP-dependent RNA helicase RhlE
1392	 43.78	0	1500918..1501520	-	200	15641419	-	VC1408	-	TetR family transcriptional regulator
1393	 48.87	0	1501627..1503081	+	484	15641420	-	VC1409	-	multidrug resistance protein, putative
1394	 49.71	0	1503062..1504282	+	406	15641421	-	VC1410	-	multidrug resistance protein VceA
1395	 46.81	0	1504292..1505827	+	511	15641422	-	VC1411	-	multidrug resistance protein VceB
1396	 44.44	0	1505781..1505897	+	38	15641423	-	VC1412	-	hypothetical protein
1397	 44.73	0	1505902..1507638	-	578	15641424	-	VC1413	-	methyl-accepting chemotaxis protein
1398	 48.13	0	1507860..1509434	-	524	15641425	-	VC1414	-	thermostable carboxypeptidase 1
1399	 49.52	0	1509632..1510150	+	172	15641426	-	VC1415	-	hcp protein
1400	 49.48	0	1510278..1513769	+	1163	15641427	-	VC1416	-	vgrG protein
1401	 42.86	-1	1513748..1514608	+	286	15641428	-	VC1417	-	hypothetical protein
1402	 39.25	-1	1514611..1516536	+	641	15641429	-	VC1418	-	hypothetical protein
1403	 34.68	-2	1516533..1517276	+	247	15641430	-	VC1419	-	hypothetical protein
1404	 39.84	-1	1517421..1518158	+	245	15641431	-	VC1420	-	hypothetical protein
1405	 44.60	0	1518246..1518884	+	212	15641432	-	VC1421	-	hypothetical protein
1406	 49.89	0	1518957..1520333	-	458	15641433	-	VC1422	-	sodium/alanine symporter
1407	 42.72	-1	1521011..1521745	+	244	15641434	-	VC1423	-	hypothetical protein
1408	 44.99	0	1521892..1522929	-	345	15641435	-	VC1424	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1409	 44.96	0	1523041..1524141	-	366	15641436	-	VC1425	-	spermidine/putrescine ABC transporter, periplasmic spermidine/putrescine-binding protein
1410	 45.01	0	1524175..1524945	-	256	15641437	potC	VC1426	-	spermidine/putrescine ABC transporter membrane protein
1411	 44.83	0	1524945..1525805	-	286	15641438	potB	VC1427	-	spermidine/putrescine ABC transporter membrane protein
1412	 44.89	0	1525786..1526919	-	377	15641439	potA	VC1428	-	putrescine/spermidine ABC transporter ATPase protein
1413	 43.03	-1	1527205..1528050	+	281	15641440	-	VC1429	-	hypothetical protein
1414	 43.66	0	1528040..1528843	+	267	15641441	-	VC1430	-	bax protein, putative
1415	 44.09	0	1528845..1529504	+	219	15641442	-	VC1431	-	hypothetical protein
1416	 44.37	0	1529581..1530513	-	310	15641443	-	VC1432	-	hypothetical protein
1417	 46.52	0	1530639..1531586	-	315	15641444	-	VC1433	-	universal stress protein UspE
1418	 43.29	0	1531716..1532468	-	250	15641445	-	VC1434	-	fumarate/nitrate reduction transcriptional regulator
1419	 49.78	0	1532558..1533232	-	224	15641446	-	VC1435	-	hypothetical protein
1420	 41.82	-1	1533229..1533393	-	54	15641447	-	VC1436	-	FixS-related protein
1421	 46.78	0	1533397..1535769	-	790	15641448	-	VC1437	-	cation transporter E1-E2 family ATPase
1422	 42.98	-1	1535774..1536250	-	158	15641449	-	VC1438	-	hypothetical protein
1423	 46.18	0	1536329..1537309	-	326	15641450	-	VC1439	-	cytochrome c oxidase, subunit CcoP
1424	 43.03	-1	1537317..1537481	-	54	15641451	-	VC1440	-	cytochrome c oxidase, subunit CcoQ
1425	 44.61	0	1537493..1538113	-	206	15641452	-	VC1441	-	cytochrome c oxidase, subunit CcoO
1426	 47.63	0	1538127..1539560	-	477	15641453	-	VC1442	-	cytochrome c oxidase, subunit CcoN
1427	 46.98	0	1539789..1540169	+	126	15641454	-	VC1443	-	hypothetical protein
1428	 43.10	-1	1540238..1541455	+	405	15641455	-	VC1444	-	hypothetical protein
1429	 38.92	-1	1541452..1543170	+	572	15641456	-	VC1445	-	sensor histidine kinase/response regulator
1430	 49.58	0	1543231..1545396	-	721	15641457	-	VC1446	-	toxin secretion transporter, putative
1431	 50.43	0	1545399..1546802	-	467	15641458	-	VC1447	-	RTX toxin transporter
1432	 45.08	0	1546757..1548919	-	720	15641459	-	VC1448	-	RTX toxin transporter
1433	 41.67	-1	1549277..1549636	+	119	15641460	-	VC1449	-	hypothetical protein
1434	 49.13	0	1549662..1550123	+	153	15641461	-	VC1450	-	RTX toxin activating protein
1435	 48.67	0	1550108..1563784	+	4558	15641462	-	VC1451	-	RTX toxin RtxA
1436	 37.33	-2	1564152..1564376	-	74	15641463	-	VC1452	-	RstC protein
1437	 45.33	0	1564470..1564844	-	124	15641464	-	VC1453	-	RstB1 protein
1438	 45.56	0	1564822..1565901	-	359	15641465	-	VC1454	-	RstA1 protein
1439	 37.76	-2	1566027..1566365	+	112	15641466	-	VC1455	-	transcriptional repressor RstR
1440	 32.53	-2	1566967..1567341	-	124	15641467	-	VC1456	-	cholera enterotoxin, B subunit
1441	 38.48	-2	1567338..1568114	-	258	15641468	-	VC1457	-	cholera enterotoxin, A subunit
1442	 49.17	0	1568213..1569412	-	399	15641469	-	VC1458	-	zona occludens toxin
1443	 44.56	0	1569409..1569702	-	97	15641470	-	VC1459	-	accessory cholera enterotoxin
1444	 48.68	0	1569699..1570982	-	427	15641471	-	VC1460	-	hypothetical protein
1445	 47.39	0	1570993..1571241	-	82	15641472	-	VC1461	-	colonization factor
1446	 44.79	0	1571377..1571760	-	127	15641473	-	VC1462	-	RstB2 protein
1447	 45.65	0	1571738..1572817	-	359	15641474	-	VC1463	-	RstA2 protein
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.