IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome.
Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below
--(default is +/- 3.48 of the mean %G+C).
Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff.
Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).




A yellow circle indicates its %G+C value is bigger than the high value.
A green circle indicates its %G+C value is bigger than the low value and smaller than the high value.
A pink circle indicates its %G+C value is smaller than the low value.

A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV.
A black verticle bar indicates a transfer RNA gene lies between the two ORFs.
A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs.
A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs.
A black square indicates the dot is annotated as a transposase.
A black triangle indicates the dot is annotated as an integrase.


Low:  High:    Mean: 47.43   STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1284	 46.26	0	1377542..1379173	-	543	15641311	-	VC1298	-	methyl-accepting chemotaxis protein
1285	 44.44	0	1379571..1379939	+	122	15641312	-	VC1299	-	6-pyruvoyl tetrahydrobiopterin synthase, putative
1286	 49.63	0	1380028..1381389	-	453	15641313	-	VC1300	-	L-serine dehydratase 1
1287	 47.05	0	1381482..1382735	-	417	15641314	-	VC1301	-	serine transporter
1288	 46.18	0	1383034..1383648	-	204	15641315	-	VC1302	-	MutT/nudix family protein
1289	 48.87	0	1383845..1385221	-	458	15641316	-	VC1303	-	para-aminobenzoate synthase component I
1290	 51.12	0	1385397..1386914	+	505	15641317	-	VC1304	-	fumarate hydratase, class I, putative
1291	 39.25	-1	1387063..1387248	+	61	15641318	-	VC1305	-	hypothetical protein
1292	 51.46	0	1387473..1388846	+	457	15641319	-	VC1306	-	hypothetical protein
1293	 48.83	0	1389975..1391516	+	513	15641320	-	VC1308	-	transcriptional regulator TyrR
1294	 45.31	0	1391516..1392091	+	191	15641321	-	VC1309	-	ribosomal-protein-alanine acetyltransferase
1295	 50.84	0	1392186..1392659	+	157	15641322	-	VC1310	-	hypothetical protein
1296	 50.97	0	1392727..1393605	-	292	15641323	-	VC1311	-	hypothetical protein
1297	 49.67	0	1393726..1394949	-	407	161582006	alr	VC1312	-	alanine racemase
1298	 48.65	0	1395061..1396692	-	543	15641325	-	VC1313	-	methyl-accepting chemotaxis protein
1299	 47.27	0	1397026..1398489	+	487	15641326	-	VC1314	-	transporter, putative
1300	 49.78	0	1398499..1399848	+	449	15641327	-	VC1315	-	sensor histidine kinase
1301	 48.85	0	1399817..1400293	+	158	15641328	-	VC1316	-	chemotaxis protein CheY, putative
1302	 48.86	0	1400321..1401241	-	306	15641329	-	VC1317	-	hypothetical protein
1303	 46.90	0	1401339..1402112	-	257	15641330	-	VC1318	-	outer membrane protein OmpV
1304	 46.71	0	1402325..1403647	-	440	15641331	-	VC1319	-	sensor histidine kinase
1305	 47.09	0	1403673..1404377	-	234	15641332	-	VC1320	-	DNA-binding response regulator
1306	 48.54	0	1404753..1407824	+	1023	15641333	-	VC1321	-	hypothetical protein
1307	 45.83	0	1407905..1408120	-	71	15641334	-	VC1322	-	hypothetical protein
1308	 46.79	0	1408099..1408581	-	160	15641335	-	VC1323	-	hypothetical protein
1309	 34.92	-2	1408946..1409134	-	62	15641336	-	VC1324	-	hypothetical protein
1310	 50.15	0	1409080..1410054	+	324	15641337	-	VC1325	-	galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein
1311	 38.46	-2	1410122..1410277	-	51	15641338	-	VC1326	-	hypothetical protein
1312	 46.28	0	1410224..1411768	+	514	15641339	-	VC1327	-	galactose/methyl galaxtoside transporter ATP-binding protein
1313	 47.63	0	1411773..1412786	+	337	15641340	mglC	VC1328	-	beta-methylgalactoside transporter inner membrane component
1314	 38.03	-2	1413196..1413834	+	212	15641341	-	VC1329	-	opacity protein-related protein
1315	 37.80	-2	1414155..1414982	+	275	15641342	-	VC1330	-	hypothetical protein
1316	 41.09	-1	1414990..1415118	-	42	15641343	-	VC1331	-	hypothetical protein
1317	 51.90	+1	1415133..1416662	-	509	15641344	-	VC1332	-	hypothetical protein
1318	 48.55	0	1416672..1417223	-	183	15641345	-	VC1333	-	hypothetical protein
1319	 52.57	+1	1417421..1418392	-	323	15641346	-	VC1334	-	hypothetical protein
1320	 49.58	0	1419022..1419729	+	235	15641347	-	VC1335	-	GntR family transcriptional regulator
1321	 52.32	+1	1419710..1420636	+	308	15641348	prpB	VC1336	-	2-methylisocitrate lyase
1322	 52.65	+1	1420812..1421945	+	377	15641349	-	VC1337	-	methylcitrate synthase
1323	 54.55	+1	1422041..1424647	+	868	15641350	-	VC1338	-	aconitate hydratase
1324	 54.53	+1	1424656..1425858	+	400	15641351	-	VC1339	-	hypothetical protein
1325	 53.24	+1	1425842..1427740	+	632	15641352	-	VC1340	-	prpE protein
1326	 46.33	0	1427914..1428390	+	158	15641353	-	VC1341	-	acetyltransferase, putative
1327	 47.93	0	1428471..1429868	+	465	15641354	-	VC1342	-	MutT/nudix family protein
1328	 49.05	0	1429934..1431040	-	368	15641355	-	VC1343	-	M20A family peptidase
1329	 48.20	0	1431464..1432573	+	369	15641356	-	VC1344	-	4-hydroxyphenylpyruvate dioxygenase
1330	 52.07	+1	1432566..1433702	+	378	15641357	-	VC1345	-	oxidoreductase, putative
1331	 51.47	0	1433709..1434728	+	339	15641358	-	VC1346	-	hypothetical protein
1332	 48.77	0	1434725..1435372	+	215	15641359	-	VC1347	-	glutathione S-transferase, putative
1333	 45.70	0	1435354..1436679	-	441	15641360	-	VC1348	-	response regulator
1334	 46.25	0	1436615..1440610	+	1331	15641361	-	VC1349	-	sensory box sensor histidine kinase/response regulator
1335	 46.62	0	1440716..1441189	-	157	15641362	-	VC1350	-	antioxidant, putative
1336	 37.95	-2	1441403..1441597	-	64	15641363	-	VC1351	-	hypothetical protein
1337	 43.01	-1	1441610..1441702	+	30	15641364	-	VC1352	-	hypothetical protein
1338	 47.94	0	1441840..1444770	+	976	15641365	-	VC1353	-	GGDEF family protein
1339	 46.30	0	1444812..1446068	-	418	15641366	-	VC1354	-	hypothetical protein
1340	 44.21	0	1446242..1446526	+	94	15641367	-	VC1355	-	acylphosphatase
1341	 45.15	0	1446592..1446921	-	109	15641368	-	VC1356	-	sulfite reductase, gamma subunit-related protein
1342	 45.83	0	1446887..1447006	-	39	15641369	-	VC1357	-	hypothetical protein
1343	 44.49	0	1447035..1447706	-	223	15641370	-	VC1358	-	hypothetical protein
1344	 44.84	0	1447951..1448706	-	251	15641371	-	VC1359	-	amino acid ABC transporter, ATP-binding protein
1345	 47.91	0	1448729..1449826	-	365	15641372	-	VC1360	-	amino acid ABC transporter, permease protein
1346	 46.77	0	1449829..1451034	-	401	15641373	-	VC1361	-	amino acid ABC transporter, permease protein
1347	 47.81	0	1451160..1452188	-	342	15641374	-	VC1362	-	amino acid ABC transporter, periplasmic amino acid-binding protein
1348	 45.79	0	1452643..1453581	+	312	15641375	-	VC1363	-	siroheme synthase component enzyme
1349	 47.81	0	1453647..1454468	-	273	15641376	-	VC1364	-	hypothetical protein
1350	 47.97	0	1454744..1455481	+	245	15641377	-	VC1365	-	hypothetical protein
1351	 48.71	0	1455494..1456189	+	231	15641378	-	VC1366	-	queuosine biosynthesis protein QueC
1352	 45.41	0	1456161..1458164	-	667	15641379	-	VC1367	-	GGDEF family protein
1353	 41.37	-1	1458335..1458583	+	82	15641380	-	VC1368	-	hypothetical protein
1354	 45.82	0	1458740..1459756	+	338	15641381	-	VC1369	-	hypothetical protein
1355	 44.29	0	1459753..1461084	+	443	15641382	-	VC1370	-	GGDEF family protein
1356	 44.64	0	1461135..1461815	-	226	15641383	-	VC1371	-	hypothetical protein
1357	 43.77	0	1462189..1463367	+	392	15641384	-	VC1372	-	GGDEF family protein
1358	 51.56	0	1463479..1466325	-	948	15641385	-	VC1373	-	DnaK-related protein
1359	 52.69	+1	1466367..1468262	-	631	15641386	-	VC1374	-	DnaK-related protein
1360	 48.83	0	1468262..1468990	-	242	15641387	-	VC1375	-	hypothetical protein
1361	 45.53	0	1469402..1470967	+	521	15641388	-	VC1376	-	GGDEF family protein
1362	 47.46	0	1471032..1471562	+	176	15641389	-	VC1377	-	hypothetical protein
1363	 42.08	-1	1471564..1471746	+	60	15641390	-	VC1378	-	hypothetical protein
1364	 50.97	0	1471848..1472312	-	154	15641391	-	VC1379	-	hypothetical protein
1365	 49.86	0	1472359..1472709	-	116	15641392	-	VC1380	-	hypothetical protein
1366	 48.10	0	1472744..1472953	-	69	15641393	-	VC1381	-	hypothetical protein
1367	 50.48	0	1472998..1476840	+	1280	161582005	-	VC1382	-	ATP-dependent RNA helicase HrpA
1368	 44.70	0	1476818..1476949	-	43	15641395	-	VC1383	-	hypothetical protein
1369	 48.45	0	1476980..1477462	+	160	15641396	-	VC1384	-	hypothetical protein
1370	 48.65	0	1477495..1477605	-	36	15641397	-	VC1385	-	hypothetical protein
1371	 52.77	+1	1477679..1479031	+	450	15641398	-	VC1386	-	putative chaperone
1372	 44.44	0	1479065..1479163	+	32	15641399	-	VC1387	-	hypothetical protein
1373	 50.93	0	1479156..1480172	+	338	15641400	lplA	VC1388	-	lipoate-protein ligase A
1374	 47.78	0	1480408..1480587	+	59	15641401	-	VC1389	-	hypothetical protein
1375	 52.79	+1	1480565..1481515	-	316	15641402	-	VC1390	-	LysR family transcriptional regulator
1376	 52.45	+1	1481602..1483008	+	468	15641403	-	VC1391	-	multidrug transporter, putative
1377	 53.40	+1	1483164..1484678	+	504	15641404	-	VC1392	-	deoxyribodipyrimidine photolyase, putative
1378	 48.89	0	1484824..1485138	+	104	15641405	-	VC1393	-	sugE protein
1379	 42.72	-1	1485193..1486428	-	411	15641406	-	VC1394	-	methyl-accepting chemotaxis protein
1380	 42.53	-1	1486808..1487068	-	86	15641407	-	VC1396	-	hypothetical protein
1381	 46.02	0	1487058..1489343	-	761	15641408	-	VC1397	-	chemotaxis protein CheA
1382	 44.27	0	1489340..1489714	-	124	15641409	-	VC1398	-	chemotaxis protein CheY
1383	 40.72	-1	1489689..1490555	-	288	15641410	-	VC1399	-	chemotaxis protein methyltransferase CheR
47.43	MEAN

4.26	STD DEV




Last Updated: Dec 04, 2008
      
Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.