IslandPathversion 1.0

IslandPath Analysis: Vibrio cholerae O1 biovar El Tor str. N16961



Each circle in the graphic corresponds to a predicted protein-coding ORF in the genome. Circle colours indicate if an ORF has a higher or lower %G+C than cutoffs you set below --(default is +/- 3.48 of the mean %G+C). Strike lines across the circles represent regions with dinucleotide bias above a pre-determined cutoff. Click on a circle to view a different portion of the table presented below the graph (default is the first 100 ORFs).
A yellow circle indicates its %G+C value is bigger than the high value. A green circle indicates its %G+C value is bigger than the low value and smaller than the high value. A pink circle indicates its %G+C value is smaller than the low value. A strike line across the circles indicates the region has dinucleotide bais above 1 STD DEV. A black verticle bar indicates a transfer RNA gene lies between the two ORFs. A purple verticle bar indicates a ribosomal RNA gene lies between the two ORFs. A deep blue verticle bar indicates both a tRNA and rRNA gene lie between the two ORFs. A black square indicates the dot is annotated as a transposase. A black triangle indicates the dot is annotated as an integrase. Low: High: Mean: 47.43 STD DEV: 4.26
Vibrio cholerae O1 biovar eltor str. N16961 chromosome I, complete sequence - 1..2961149
2742 proteins
Pos	%G+C	SD	Location	Strand	Length	PID	Gene	Synonym	Code	Product
1224	 50.00	0	1312560..1313345	+	261	15641251	cobS	VC1238	-	cobalamin synthase
1225	 52.22	+1	1313354..1313893	+	179	15641252	cobU	VC1239	-	adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase
1226	 52.07	+1	1313900..1314502	+	200	15641253	-	VC1240	-	alpha-ribazole-5`-phosphate phosphatase CobC, putative
1227	 48.15	0	1314660..1314767	+	35	15641254	-	VC1241	-	hypothetical protein
1228	 49.47	0	1314818..1315846	+	342	15641255	-	VC1242	-	succinylglutamate desuccinylase
1229	 38.10	-2	1315816..1315962	-	48	15641256	-	VC1243	-	hypothetical protein
1230	 52.68	+1	1315915..1316922	+	335	15641257	-	VC1244	-	vtamin B12-transporter permease
1231	 50.66	0	1316909..1317664	+	251	15641258	-	VC1245	-	vitamin B12-transporter ATPase
1232	 45.31	0	1318049..1318624	-	191	15641259	-	VC1246	-	hypothetical protein
1233	 42.17	-1	1318803..1319198	-	131	15641260	-	VC1247	-	hypothetical protein
1234	 50.40	0	1319246..1320856	-	536	15641261	-	VC1248	-	methyl-accepting chemotaxis protein
1235	 47.17	0	1321087..1321599	-	170	15641262	-	VC1249	-	hypothetical protein
1236	 46.11	0	1321865..1322764	-	299	15641263	-	VC1250	-	hypothetical protein
1237	 35.35	-2	1322777..1322875	-	32	15641264	-	VC1251	-	hypothetical protein
1238	 48.96	0	1322928..1324175	+	415	15641265	-	VC1252	-	competence damage protein CinA, putative
1239	 48.02	0	1324348..1324776	-	142	15641266	-	VC1253	-	hypothetical protein
1240	 45.52	0	1324877..1325155	-	92	15641267	-	VC1254	-	iron-sulfur cluster-binding protein, putative
1241	 46.12	0	1325155..1326288	-	377	161582009	nrdB	VC1255	-	ribonucleotide-diphosphate reductase subunit beta
1242	 48.78	0	1326384..1328669	-	761	15641269	-	VC1256	-	ribonucleotide-diphosphate reductase subunit alpha
1243	 48.78	0	1329118..1329855	-	245	15641270	-	VC1257	-	3-demethylubiquinone-9 3-methyltransferase
1244	 51.17	0	1330207..1332891	+	894	15641271	-	VC1258	-	DNA gyrase, subunit A
1245	 49.55	0	1333104..1334102	+	332	15641272	-	VC1259	-	hypothetical protein
1246	 47.11	0	1334129..1335028	-	299	15641273	-	VC1260	-	AraC/XylS family transcriptional regulator
1247	 48.56	0	1335279..1336493	+	404	15641274	-	VC1261	-	hypothetical protein
1248	 46.89	0	1336676..1336852	+	58	15641275	-	VC1262	-	hypothetical protein
1249	 45.47	0	1337023..1337673	+	216	15641276	ribA	VC1263	-	GTP cyclohydrolase II
1250	 50.00	0	1337809..1339116	+	435	15641277	-	VC1264	-	iron-regulated protein A, putative
1251	 52.38	+1	1339323..1340708	+	461	15641278	-	VC1265	-	hypothetical protein
1252	 52.58	+1	1340718..1341725	+	335	15641279	-	VC1266	-	hypothetical protein
1253	 53.00	+1	1341706..1342788	+	360	15641280	-	VC1267	-	hypothetical protein
1254	 47.68	0	1343035..1344609	+	524	15641281	-	VC1268	-	hypothetical protein
1255	 48.09	0	1344755..1345303	+	182	15641282	-	VC1269	-	hypothetical protein
1256	 51.75	+1	1345367..1346023	+	218	15641283	-	VC1270	-	glyoxylase II family protein
1257	 48.95	0	1346017..1346733	-	238	15641284	-	VC1271	-	hypothetical protein
1258	 52.35	+1	1346837..1347262	+	141	15641285	-	VC1272	-	hypothetical protein
1259	 48.92	0	1347537..1348742	+	401	15641286	-	VC1273	-	extracellular solute-binding protein
1260	 45.88	0	1348844..1349377	+	177	15641287	-	VC1274	-	hypothetical protein
1261	 50.08	0	1349387..1350670	+	427	15641288	-	VC1275	-	hypothetical protein
1262	 46.61	0	1350777..1352132	+	451	15641289	-	VC1276	-	sensor histidine kinase
1263	 47.31	0	1352113..1352763	+	216	15641290	-	VC1277	-	LuxR family transcriptional regulator
1264	 50.00	0	1352765..1353244	-	159	15641291	-	VC1278	-	MarR family transcriptional regulator
1265	 48.37	0	1353601..1355223	+	540	15641292	-	VC1279	-	BCCT family transporter
1266	 44.91	0	1355388..1356683	-	431	15641293	-	VC1280	-	hypothetical protein
1267	 40.85	-1	1356926..1357231	+	101	15641294	-	VC1281	-	PTS system, cellobiose-specific IIB component
1268	 45.71	0	1357310..1358650	+	446	15641295	-	VC1282	-	PTS system, cellobiose-specific IIC component
1269	 42.86	-1	1358697..1359032	+	111	15641296	-	VC1283	-	PTS system, cellobiose-specific IIA component
1270	 46.41	0	1359014..1360336	+	440	15641297	-	VC1284	-	6-phospho-beta-glucosidase
1271	 44.93	0	1360359..1361117	+	252	15641298	-	VC1285	-	hypothetical protein
1272	 48.97	0	1361218..1362240	+	340	15641299	-	VC1286	-	LacI family transcription regulator
1273	 50.88	0	1362386..1364551	-	721	15641300	-	VC1287	-	glucosyltransferase MdoH
1274	 48.35	0	1364570..1366207	-	545	15641301	mdoG	VC1288	-	glucan biosynthesis protein G
1275	 48.84	0	1366600..1368495	+	631	15641302	-	VC1289	-	methyl-accepting chemotaxis protein
1276	 50.35	0	1368634..1369344	-	236	15641303	-	VC1290	-	DNA polymerase III subunit epsilon
1277	 47.65	0	1369341..1371254	-	637	15641304	-	VC1291	-	hypothetical protein
1278	 45.10	0	1371469..1371570	+	33	15641305	-	VC1292	-	hypothetical protein
1279	 48.45	0	1371535..1372725	-	396	161582008	-	VC1293	-	aromatic amino acid aminotransferase
1280	 40.32	-1	1372937..1373122	-	61	15641307	-	VC1294	-	hypothetical protein
1281	 48.34	0	1373094..1374572	-	492	15641308	-	VC1295	-	hypothetical protein
1282	 49.23	0	1375081..1375929	+	282	15641309	-	VC1296	-	phosphomethylpyrimidine kinase
1283	 49.75	0	1375995..1377395	-	466	161582007	asnC	VC1297	-	asparaginyl-tRNA synthetase
1284	 46.26	0	1377542..1379173	-	543	15641311	-	VC1298	-	methyl-accepting chemotaxis protein
1285	 44.44	0	1379571..1379939	+	122	15641312	-	VC1299	-	6-pyruvoyl tetrahydrobiopterin synthase, putative
1286	 49.63	0	1380028..1381389	-	453	15641313	-	VC1300	-	L-serine dehydratase 1
1287	 47.05	0	1381482..1382735	-	417	15641314	-	VC1301	-	serine transporter
1288	 46.18	0	1383034..1383648	-	204	15641315	-	VC1302	-	MutT/nudix family protein
1289	 48.87	0	1383845..1385221	-	458	15641316	-	VC1303	-	para-aminobenzoate synthase component I
1290	 51.12	0	1385397..1386914	+	505	15641317	-	VC1304	-	fumarate hydratase, class I, putative
1291	 39.25	-1	1387063..1387248	+	61	15641318	-	VC1305	-	hypothetical protein
1292	 51.46	0	1387473..1388846	+	457	15641319	-	VC1306	-	hypothetical protein
1293	 48.83	0	1389975..1391516	+	513	15641320	-	VC1308	-	transcriptional regulator TyrR
1294	 45.31	0	1391516..1392091	+	191	15641321	-	VC1309	-	ribosomal-protein-alanine acetyltransferase
1295	 50.84	0	1392186..1392659	+	157	15641322	-	VC1310	-	hypothetical protein
1296	 50.97	0	1392727..1393605	-	292	15641323	-	VC1311	-	hypothetical protein
1297	 49.67	0	1393726..1394949	-	407	161582006	alr	VC1312	-	alanine racemase
1298	 48.65	0	1395061..1396692	-	543	15641325	-	VC1313	-	methyl-accepting chemotaxis protein
1299	 47.27	0	1397026..1398489	+	487	15641326	-	VC1314	-	transporter, putative
1300	 49.78	0	1398499..1399848	+	449	15641327	-	VC1315	-	sensor histidine kinase
1301	 48.85	0	1399817..1400293	+	158	15641328	-	VC1316	-	chemotaxis protein CheY, putative
1302	 48.86	0	1400321..1401241	-	306	15641329	-	VC1317	-	hypothetical protein
1303	 46.90	0	1401339..1402112	-	257	15641330	-	VC1318	-	outer membrane protein OmpV
1304	 46.71	0	1402325..1403647	-	440	15641331	-	VC1319	-	sensor histidine kinase
1305	 47.09	0	1403673..1404377	-	234	15641332	-	VC1320	-	DNA-binding response regulator
1306	 48.54	0	1404753..1407824	+	1023	15641333	-	VC1321	-	hypothetical protein
1307	 45.83	0	1407905..1408120	-	71	15641334	-	VC1322	-	hypothetical protein
1308	 46.79	0	1408099..1408581	-	160	15641335	-	VC1323	-	hypothetical protein
1309	 34.92	-2	1408946..1409134	-	62	15641336	-	VC1324	-	hypothetical protein
1310	 50.15	0	1409080..1410054	+	324	15641337	-	VC1325	-	galactoside ABC transporter, periplasmic D-galactose/D-glucose-binding protein
1311	 38.46	-2	1410122..1410277	-	51	15641338	-	VC1326	-	hypothetical protein
1312	 46.28	0	1410224..1411768	+	514	15641339	-	VC1327	-	galactose/methyl galaxtoside transporter ATP-binding protein
1313	 47.63	0	1411773..1412786	+	337	15641340	mglC	VC1328	-	beta-methylgalactoside transporter inner membrane component
1314	 38.03	-2	1413196..1413834	+	212	15641341	-	VC1329	-	opacity protein-related protein
1315	 37.80	-2	1414155..1414982	+	275	15641342	-	VC1330	-	hypothetical protein
1316	 41.09	-1	1414990..1415118	-	42	15641343	-	VC1331	-	hypothetical protein
1317	 51.90	+1	1415133..1416662	-	509	15641344	-	VC1332	-	hypothetical protein
1318	 48.55	0	1416672..1417223	-	183	15641345	-	VC1333	-	hypothetical protein
1319	 52.57	+1	1417421..1418392	-	323	15641346	-	VC1334	-	hypothetical protein
1320	 49.58	0	1419022..1419729	+	235	15641347	-	VC1335	-	GntR family transcriptional regulator
1321	 52.32	+1	1419710..1420636	+	308	15641348	prpB	VC1336	-	2-methylisocitrate lyase
1322	 52.65	+1	1420812..1421945	+	377	15641349	-	VC1337	-	methylcitrate synthase
1323	 54.55	+1	1422041..1424647	+	868	15641350	-	VC1338	-	aconitate hydratase
47.43	MEAN

4.26	STD DEV



Last Updated: Dec 04, 2008

Funding for this work was provided by the Peter Wall Institute for Advanced Studies. This service is hosted by the Brinkman Laboratory of the Department of Molecular Biology and Biochemistry at Simon Fraser University.